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  • Phage prohead proteases activate CBASS antiphage immunity (Science)

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  1. UpdatesAug 9, 2023

    Phage PASA16 compassionate-use case series in 16 patients with refractory Pseudomonas aeruginosa infections

    A case series from the Israeli Phage Therapy Center describes phage PASA16, provided pro bono by Adaptive Phage Therapeutics, given intravenously, locally or topically with antibiotics to 16 patients with non-resolving Pseudomonas aeruginos

    UpdatesPapersPhage Therapy
  2. UpdatesAug 7, 2023

    Cell-free synthesis of phage T7 improved up to tenfold with engineered E. coli lysates

    Tulane University researchers used inducible CRISPR interference to manipulate 18 E. coli BL21 genes and identify effectors of phage T7 propagation, then modified the bacterial lysate used for cell-free bacteriophage synthesis accordingly.

    UpdatesPapersManufacturingPhage Biology
  3. UpdatesJul 20, 2023

    Engineered reporter phages detect E. coli, Enterococcus and Klebsiella in urine within 5 hours

    ETH Zurich researchers genetically engineered two virulent phages per uropathogen (E. coli, Enterococcus spp., Klebsiella spp.) to express a nanoluciferase reporter on infection and tested the bioluminescence assay on 206 patient urine samp

    UpdatesPapersDiagnosticsPhage Engineering
  4. UpdatesJun 27, 2023

    Personalized aerosolized phage treatment of a chronic multidrug-resistant Pseudomonas aeruginosa lung infection

    Nature Communications case report of a 41-year-old man with Kartagener syndrome and a life-threatening chronic multidrug-resistant Pseudomonas aeruginosa lung infection who was treated successfully with iterative aerosolized phage treatment

    UpdatesPapersPhage Therapy
  5. UpdatesJun 22, 2023

    Intracellular phage tail-like nanostructures affect osmotic stress susceptibility of Streptomyces lividans

    Streptomyces lividans, a model filamentous Gram-positive bacterium with conserved contractile-injection-system gene clusters, makes phage tail-like particles (SLPs) that stay in the cytoplasm instead of being released. Without SLPs, aerial

    UpdatesPapersPhage Biology
  6. UpdatesMay 30, 2023

    T4 bacteriophage-based artificial viral vectors for human genome remodeling

    Nature Communications paper that builds artificial viral vectors (AVVs) from bacteriophage T4 components: a 120 × 86 nm capsid shell that holds 171-Kbp DNA and thousands of protein copies is loaded with DNAs, proteins, RNAs and ribonucleopr

    UpdatesPapersPhage Engineering
  7. UpdatesMay 18, 2023

    UK public attitudes to phage therapy: survey of 787 people

    PLOS ONE survey (N = 787, Prolific) of UK public awareness and acceptance of phage therapy found moderate acceptance, a mean likelihood of 4.71 on a 1-7 scale. Priming participants to think about novel medicines and antibiotic resistance ra

    UpdatesPapersPhage Therapy
  8. UpdatesMay 11, 2023

    Cryo-EM structure of the f1 filamentous phage, including its tips

    Nature Communications paper using cryo-electron microscopy of short Ff-derived nanorods to determine a structure of a filamentous virus (f1, fd or M13 phages) including the tips. Combined with mutagenesis, it identifies phage domains import

    UpdatesPapersPhage Biology
  9. UpdatesMay 4, 2023

    Engineered phage with antibacterial CRISPR–Cas selectively reduce E. coli burden in mice

    Nature Biotechnology paper on SNIPR001: from a library of 162 wild-type phages, eight with broad E. coli coverage were selected and engineered with tail fibers and CRISPR–Cas machinery to target E. coli. A combination of the four most compl

    UpdatesPapersPhage EngineeringPhage Therapy
  10. UpdatesApr 26, 2023

    Poly(acrylic acid) prevents bacteriophage infection of bacterial hosts

    University of Warwick and Cytiva authors show that poly(acrylic acid) prevents phage-induced killing of bacterial hosts and phage replication without affecting induction of recombinant protein expression, and was more active than poly(metha

    UpdatesPapersManufacturingPhage Biology
  11. UpdatesApr 21, 2023

    iPHoP: integrated machine-learning framework to predict hosts of metagenome-derived phages and archaeal viruses

    iPHoP, from the DOE Joint Genome Institute, is a two-step framework that integrates multiple methods to predict host taxonomy at the genus rank for viruses infecting bacteria and archaea while retaining a low false discovery rate. Applied t

    UpdatesPapersBioinformaticsPhage Genomics
  12. UpdatesMar 11, 2023

    Preprint finds mammalian cells internalize phage T4 and use it as a food source

    A bioRxiv preprint reports that highly purified phage T4 was rapidly internalized in vitro by A549 lung epithelial cells, MDCK-I kidney cells and mouse bone marrow-derived macrophages without activating TLR9 or cGAS-STING inflammatory pathw

    UpdatesPapersPhage Biology
  13. UpdatesFeb 23, 2023

    Mycobacterial protein Lsr2 is required for productive mycobacteriophage infection

    Live-cell fluorescence microscopy shows that mycobacteriophage infection of Mycobacterium smegmatis depends on the host nucleoid-associated protein Lsr2, which reorganizes away from host replication foci to set up zones of phage DNA replica

    UpdatesPapersPhage Biology
  14. UpdatesJan 25, 2023

    Computational phage detection benchmark

    The study surveyed 19 metagenomic phage-detection tools and benchmarked nine that could be installed and run at scale, comparing performance across fragmented genomes, simulated metagenomes, and real samples. Evaluation of computational pha

    UpdatesPapers
  15. UpdatesJan 24, 2023

    Translation-inhibiting antibiotics can antagonize phage infectivity by blocking deployment of anti-CRISPR counter-defenses

    University of Exeter authors show, using Pseudomonas aeruginosa PA14 and phage DMS3vir, that antibiotics targeting protein translation raise CRISPR-Cas immunity against phages carrying anti-CRISPR (acr) genes by interfering with production

    UpdatesPapersPhage BiologyAMR
  16. UpdatesJan 3, 2023

    Ciliate Halteria can grow on a diet of chloroviruses

    University of Nebraska-Lincoln authors show that small protists can consume viruses and grow and divide given only viruses to eat; the ciliate Halteria sp. foraging on chloroviruses shows dynamics similar to other microbial trophic interact

    UpdatesPapersVirology
  17. UpdatesDec 5, 2022

    Sprayable phage microgels cut E. coli O157:H7 on food by up to 6 logs (McMaster, Nature Communications)

    McMaster University researchers (Lei Tian, Zeinab Hosseinidoust and colleagues) crosslinked half a million filamentous phages into each soft microgel, producing over 35,000 microgels per square centimetre of film template, a 13-billion-phag

    UpdatesPapersFood SafetyPhage Engineering
  18. UpdatesAug 3, 2022

    Jumbo phage nuclear shell assembles from one protein, chimallin (ChmA): Nature paper

    Nature paper (Laughlin et al.) reporting that the nucleus-like shell with which jumbo phages protect their replicating genomes from host defences assembles primarily from one protein, named chimallin (ChmA). Cryo-electron tomography in infe

    UpdatesPapersPhage Biology
  19. UpdatesAug 2, 2022

    Identification of bacteriophage genome sequences with representation learning

    INHERIT combines database-based and alignment-free phage identification using deep representation learning. It achieved an F1 score of 0.9932 on a third-party benchmark; pre-training on two species separately improved prediction. bioRxiv

    UpdatesPapersBioinformaticsPhage Genomics
  20. UpdatesJul 23, 2022

    Mycovirus strain FgV1-SD4 eliminates deoxynivalenol (vomitoxin) production by the wheat scab fungus Fusarium graminearum

    A novel strain of Fusarium graminearum virus 1 (FgV1-SD4), a virus of the fungus rather than a bacteriophage, was the only mycovirus found in an F. graminearum isolate with significantly reduced virulence on wheat. No deoxynivalenol (DON, v

    UpdatesPapersAgricultureVirology
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