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Antoine Culot (Rime Bioinformatics) and colleagues published a new paper on high-performance phage genome annotation, showing their automated rTOOLS pipeline provides functional annotations comparable to manual methods, enabling safer and f

In a new preprint, Ritam Das and Janina Rahlff (Friedrich Schiller University Jena, Germany) describe a positive correlation between the number of structural genes and above-average guanine-cytosine (GC) content in phage genomes.

Katelyn McNair, the creator of Phanotate, has introduced a new tool called Genotate, designed to identify and predict coding genes in phage genomes. Now in final stages of development, it’s built to take your phage genome annotation and an

Pre-print: The defence island repertoire of the Escherichia coli pan-genome.

Pre-print: MetaPhage: an automated pipeline for analyzing, annotating, and classifying bacteriophages in metagenomics sequencing data

PHAGE GENOME ANNOTATION TWO-DAY VIRTUAL WORKSHOP A two-day course that will cover the processes of phage genome assembly, annotation and introduction to comparative phage genome analysis. Solutions to common phage genome assembly problems w

Research Assistant: Implement novel and existing Next-Generation Sequencing (NGS) applications, including assembly and annotation of bacterial and phage genomes.

I would like to introduce Phage Commander, a new genome annotation tool that runs a genome through multiple gene calling programs simultaneously and outputs the results to a single spreadsheet. Phage Commander includes the following program

From the Center for Phage Technology, via Twitter: "Are you interested in attending a potential 1-day workshop and training session on the use of the CPT's Galaxy-Apollo platform for phage genome annotation? The workshop would likely run in

The Center for Phage Technology (Texas A&M) has released its upgraded and improved Galaxy-Apollo phage annotation platform. This is a free, web-based, gold-standard system for phage annotation, and their website includes training materials

Apollo - A collaborative, real-time, genome annotation web-based editor. Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in

Galaxy is an open source, web-based platform for data intensive biomedical research. The above URL links to the Center for Phage Technology's instance of Galaxy. The Galaxy Project / Center for Phage Technology

PATRIC, the Pathosystems Resource Integration Center, provides integrated data and analysis tools to support biomedical research on bacterial infectious diseases. PATRIC is the Bacterial Bioinformatics Resource Center, an information system

Phage genomes can be hard to annotate, especially with tools that aren't designed with phages in mind. Fortunately, Katelyn McNair and colleagues in Rob Edwards' lab have published a paper describing their new phage gene caller, PHANOTATE.

Phage genomes can be hard to annotate, especially with tools that aren't designed with phages in mind. Fortunately, Katelyn McNair and colleagues in Rob Edwards' lab have published a paper describing their new phage gene caller, PHANOTATE.