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Ep 18: Discussion of Phage Therapy for CF Patients - Rebekah Dedrick

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  • Q&A: Favorite phage production equipment

    Issue 323Jessica Sacher

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  • Phage prohead proteases activate CBASS antiphage immunity (Science)

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  1. UpdatesJun 6, 2025

    Eleanor Rand (Harvard Medical School) and colleagues published a new paper on a targeted phage discovery method called Phage

    Eleanor Rand (Harvard Medical School) and colleagues published a new paper on a targeted phage discovery method called Phage DisCo, a co-culture-based phage screening technique. Using isogenic, fluorescently tagged bacterial strains, they c

    UpdatesResearch paperPhage discoveryMethods
  2. UpdatesMar 21, 2025

    Amit Rimon (Hebrew University of Jerusalem) and colleagues published a new paper on comparing methods for assessing phage act

    Amit Rimon (Hebrew University of Jerusalem) and colleagues published a new paper on comparing methods for assessing phage activity against biofilms, showing several promising techniques including calorimetry, extracellular ATP measurement,

    UpdatesPreprintBiofilmMethods
  3. UpdatesMar 21, 2025

    Su Jin Jo (Seoul National University) and colleagues published a paper on a new model they've developed for standardizing and

    Su Jin Jo (Seoul National University) and colleagues published a paper on a new model they've developed for standardizing and optimizing an agar plate-based method for phage production based on plaque size and inoculum concentration.

    UpdatesMethodsPhage production
  4. UpdatesMar 14, 2025

    Siti Adil (La Trobe University) and colleagues published a new phage purification methods comparison paper, showing Triton X-

    Siti Adil (La Trobe University) and colleagues published a new phage purification methods comparison paper, showing Triton X-100 was most effective for endotoxin removal and phage recovery compared to CsCl ultracentrifugation and endotoxin

    UpdatesResearch paperPhage purificationMethods
  5. UpdatesNov 1, 2024

    Jyot Antani (Yale University) and colleagues developed a microscopy-based technique to measure phage attachment to bacterial

    Jyot Antani (Yale University) and colleagues developed a microscopy-based technique to measure phage attachment to bacterial cells. This method provides an attractive alternative to the (literally) century-old Phage Adsorption Assay because

    UpdatesResearch paperMicroscopyMethods
  6. UpdatesFeb 24, 2024

    Silvia Würstle and colleagues at the Center for Phage Biology & Therapy at Yale University published a paper on their optimiz

    Silvia Würstle and colleagues at the Center for Phage Biology & Therapy at Yale University published a paper on their optimized pipeline for emergency phage therapy against P. aeruginosa. Their pipeline includes evaluation of useful evolved

    UpdatesPhage productionPhage therapyMethods
  7. UpdatesNov 24, 2023

    Justin Boeckman (Center for Phage Technology, Texas) and colleagues published a protocol detailing methods for phage DNA extr

    Justin Boeckman (Center for Phage Technology, Texas) and colleagues published a protocol detailing methods for phage DNA extraction, genome assembly, and genome closure.

    UpdatesResearch PaperMethodsDNA ExtractionGenome Assembly
  8. UpdatesSep 29, 2023

    From @scientiff via Twitter: Hey #scitwitter! I’m troubleshooting some #phage DNA extraction woes with our undergrads. We use

    From @scientiff via Twitter: Hey #scitwitter! I’m troubleshooting some #phage DNA extraction woes with our undergrads. We use phenol-chloroform-isoamyl and phase-lock gels for the process but we’re still getting high 260/230 after elution.

    UpdatesCommunityPhage twitterMethods
  9. UpdatesMar 20, 2020

    Elizabeth Burgener (Stanford University) and colleagues published a new preprint on methods for extracting and detecting phag

    Elizabeth Burgener (Stanford University) and colleagues published a new preprint on methods for extracting and detecting phage DNA from CF patient sputum.

    UpdatesCystic FibrosisMethodsPreprint
  10. UpdatesMar 19, 2020

    Elizabeth Burgener (Stanford University) and colleagues published a new preprint on methods for extracting and detecting phag

    Elizabeth Burgener (Stanford University) and colleagues published a new preprint on methods for extracting and detecting phage DNA from CF patient sputum.

    UpdatesCystic FibrosisMethodsPreprint
  11. UpdatesMar 5, 2020

    Q&A: making phage mutants

    Important question: if I had a student who wanted to make an undomesticated bacteriophage mutant that could not make plaques, other than conditionally, is there a way other than bashing plaque isolates at two temperatures after random mutag

    UpdatesCommunityMethodsQ&A
  12. UpdatesMar 5, 2020

    Q&A: making phage mutants

    Important question: if I had a student who wanted to make an undomesticated bacteriophage mutant that could not make plaques, other than conditionally, is there a way other than bashing plaque isolates at two temperatures after random mutag

    UpdatesCommunityMethodsQ&A
  13. UpdatesJan 29, 2020

    Phage Methods Q&A: PEG precipitation

    When doing a PEG precipitation of phages, some people (like me) use a PEG stock solution (20-30% w/v PEG in NaCl), whereas other people add the PEG powder directly to the sample. What are the pros and cons? — @EvelienAdri Check out the Twi

    UpdatesCommunityMethodsQ&A
  14. UpdatesJan 29, 2020

    Phage Methods Q&A: PEG precipitation

    When doing a PEG precipitation of phages, some people (like me) use a PEG stock solution (20-30% w/v PEG in NaCl), whereas other people add the PEG powder directly to the sample. What are the pros and cons? — @EvelienAdri Check out the Twi

    UpdatesCommunityMethodsQ&A
  15. UpdatesNov 22, 2019

    Ushanandini Mohanraj (University of Helsinki) and colleagues have published a paper showing a screen they've developed to ide

    Ushanandini Mohanraj (University of Helsinki) and colleagues have published a paper showing a screen they've developed to identify hypothetical phage proteins with antibacterial activity. They've used it to identify four Yersinia phage prot

    UpdatesResearchMethodsAssigning functions to phage genes
  16. UpdatesNov 22, 2019

    Ushanandini Mohanraj (University of Helsinki) and colleagues have published a paper showing a screen they've developed to ide

    Ushanandini Mohanraj (University of Helsinki) and colleagues have published a paper showing a screen they've developed to identify hypothetical phage proteins with antibacterial activity. They've used it to identify four Yersinia phage prot

    UpdatesResearchMethodsAssigning functions to phage genes
  17. UpdatesOct 3, 2019

    Hans Duyvejonck and colleagues at Ghent University and the Queen Astrid Military Hospital in Belgium have published a paper e

    Hans Duyvejonck and colleagues at Ghent University and the Queen Astrid Military Hospital in Belgium have published a paper evaluating the use of qPCR to quantify 5 phages within a cocktail. They compared qPCR to plaque assays, and showed t

    UpdatesResearchPhage QuantificationMethodsPhage Therapy
  18. UpdatesOct 1, 2019

    Hans Duyvejonck and colleagues at Ghent University and the Queen Astrid Military Hospital in Belgium have published a paper e

    Hans Duyvejonck and colleagues at Ghent University and the Queen Astrid Military Hospital in Belgium have published a paper evaluating the use of qPCR to quantify 5 phages within a cocktail. They compared qPCR to plaque assays, and showed t

    UpdatesResearchPhage QuantificationMethodsPhage Therapy
  19. UpdatesAug 29, 2019

    Community Q&A: Removing phages from liquid?

    Question: Hello phage people, does anyone have an improved method to physically remove #phages from liquid broth? Thank you! — @PetrovicFabijan A subset of the answers to date: - We use Amicon filters in my lab to concentrate phage and we

    UpdatesCommunityQ&A#PhageTwitterMethods
  20. UpdatesAug 29, 2019

    Community Q&A: Removing phages from liquid?

    Question: Hello phage people, does anyone have an improved method to physically remove #phages from liquid broth? Thank you! — @PetrovicFabijan A subset of the answers to date: - We use Amicon filters in my lab to concentrate phage and we

    UpdatesCommunityQ&A#PhageTwitterMethods
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