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Ep 18: Discussion of Phage Therapy for CF Patients - Rebekah Dedrick

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  • Q&A: Favorite phage production equipment

    Issue 323Jessica Sacher

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  1. Capsid & TailJun 16, 2023

    Getting our AKTA-gether: Using the AKTA Flux to purify phages for patients

    This week I’m excited to share how I’ve been using the AKTA Flux system to purify phages for patients. What used to be overwhelming now feels pretty dreamy. Worth considering for any phage lab making patient-ready preps! This week I’m excit

    Phage Production and ManufacturingLab notesToolsTechnical Aspects of Phage Research
  2. Capsid & TailMay 26, 2023

    C&T Round Up for May 2023!

    This month, we covered a new phage podcast, launched the Evergreen Phage Meeting sign up site, and talked about using databases for phage work! Time marches on, and another month has gone by! This month we launched the new Evergreen Phage M

    Phage Community and CollaborationToolsTechBio
  3. Capsid & TailMay 19, 2023

    Working with Databases

    This week, Jan continues his casual "Data Series" of posts to show how phage labs can start using relational databases today, with Airtable. In the previous issue, Working with tabular data, we looked at some capabilities, pros, and cons of

    Tools
  4. Capsid & TailApr 28, 2023

    C&T Round Up for April 2023!

    This month, we talked about analyzing qPCR results, Phage Australia's official response to the Phage UK inquiry, and got hands on with building a project with ChatGPT! We put out some good work in April! This month we’ve been neck deep in d

    Technical Aspects of Phage ResearchRegulatory and Ethical ConsiderationsTools
  5. Capsid & TailApr 21, 2023

    Discovering coding (& building an AI tool) as a biologist, thanks to ChatGPT

    This week, Jessica Sacher shows you how, as a non-coder, she got ChatGPT to help her make a chatbot that knows everything we've published across 220 Capsid & Tail blog posts (almost every week for the last 4.5 years!), how you can play with

    Technical Aspects of Phage ResearchTechBioTools
  6. Capsid & TailMar 31, 2023

    C&T Round Up for March 2023!

    This month we featured a new phage startup out of Shanghai, and massive write-ups on lab automation, working with tabular data, and using qPCR for phage therapy. March was an action-packed month! We had a great post about a new phage startu

    ToolsTechnical Aspects of Phage ResearchPhage Therapy Access and Implementation
  7. Capsid & TailMar 17, 2023

    Working with tabular data

    This week, Jan takes another detour into data-land, playing around with spreadsheets and tabular data, exploring VLOOKUP, pivot tables, and other formulas. In our previous data issue, we defined some types of data, and explored ways to thin

    Tools
  8. Capsid & TailMar 10, 2023

    Learning to Code as a Lab Rat

    This week we introduce a new guest writer, Thomas Hunt, who will write about his experiences in lab automation. In a lot of ways, the mentality of coding and lab work are polar opposites. Work in the lab is meticulous and demands a strong a

    ToolsTechnical Aspects of Phage Research
  9. Capsid & TailFeb 24, 2023

    C&T Round Up for February 2023!

    This month, we featured a new UK Phage Therapy initiative and wrote about lessons in scaling bio and how to think about data. Another month is behind us! This time, we’re posting this Roundup in the mountains of New Zealand! We’re really pr

    Phage Therapy Access and ImplementationPersonal Experiences and ReflectionsTools
  10. Capsid & TailFeb 17, 2023

    How to think about data

    This week, Jan goes meta about data. Everyone throws around the term data, but what is it exactly? Jan explores the different kinds of data, how to work with data, and shares some ideas for keeping data neat and tidy. “Data” is one of those

    ToolsTechnical Aspects of Phage ResearchPhage Community and Collaboration
  11. Capsid & TailJan 13, 2023

    2023: A look ahead

    Well hello there, 2023! We’ve made great strides in the past year, gotten our hands wet in the lab (Jessica at least 😉), built data systems, and even delivered phages for patients. This year we aim to do a whole lot more of that! This week

    Phage Therapy Access and ImplementationToolsStandardsPhage Community and Collaboration
  12. Capsid & TailDec 16, 2022

    Reflecting back on 2022

    We’re at the end of the year again, and what a whirlwind of a 2022 it’s been! Here's our annual end-of-year reflection on what we're most proud of, what we've accomplished, & those who've helped us along the way! Hi phage friends, We’re at

    Phage Production and ManufacturingPhage Therapy Access and ImplementationToolsPhage Community and Collaboration
  13. Capsid & TailDec 9, 2022

    On Data Analytics and Biology

    This week, Jan takes a detour into data analytics! This follows up on the last informal Data Series post designing an auditable, replicable, and accessible phage data system. This time, Jan delves a bit deeper into what data analytics is, w

    ToolsTechBioTechnical Aspects of Phage Research
  14. Capsid & TailOct 28, 2022

    C&T Round Up for October 2022!

    This week, we highlight our October feature articles: Dive down the rabbit hole with us on designing phage data systems, building sustainable phage therapy, and get excited for this year's World Phage Week! Here's what we published this mon

    ToolsPhage Community and CollaborationPhage Therapy Access and ImplementationIntellectual Property and Commercialization
  15. Capsid & TailOct 7, 2022

    How to design a phage data system

    This week Jan Zheng explores a few design decisions and considerations behind building a system for collecting data from every part of the phage therapy pipeline. For phage therapy to be efficient, cost-effective, and reliable at scale, eve

    ToolsStandardsPhage Community and Collaboration
  16. Capsid & TailSep 30, 2022

    C&T Round Up for September 2022!

    This week, we highlight the feature articles we published in September! Learn about main themes from Phage Futures Europe 2022, MetaPhage: a new pipeline for turning raw reads into phage insights, and how to set up a basic phage QC system i

    Phage Community and CollaborationToolsTechnical Aspects of Phage Research
  17. Capsid & TailSep 16, 2022

    MetaPhage: Towards user-friendly phage bioinformatics

    MetaPhage is a new pipeline for turning raw reads into phage insights. It’s a massive step in the right direction towards one-click phage analysis. Here's my trying (and failing) to run MetaPhage on a laptop, and a short tutorial to get you

    ToolsTechBio
  18. Capsid & TailAug 26, 2022

    PhageAI and natural language processing for in silico characterization of the phage life cycle

    This week Marcin Lubocki and Piotr Tynecki explain how AI tools like PhageAI can help us characterize our phages faster and more accurately (but only with the help of the phage community!). ## The phage therapy perspective in the nearest fu

    ToolsTechBioTechnical Aspects of Phage Research
  19. Capsid & TailMay 6, 2022

    Spot or Not: A simple system to rate your spot tests

    How do you turn subjective observations into a quantified, somewhat-less-subjective observations? This week Jan Zheng continues his phage data series, delving into how (and why) the well-known 'Net Promotor Score' used by software companies

    ToolsTechnical Aspects of Phage ResearchPhage Therapy Applications
  20. Capsid & TailApr 22, 2022

    How to organize your biobank data

    Now that we’ve covered tracking phage metadata and building identities for our phages, it’s time to consider how our phages fit into our biobanks. This week in Capsid and Tail, Jan Zheng explains his thinking on how to organize phage bioban

    ToolsStandardsPhage Community and Collaboration
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