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  1. Radical Numerics says Omnii-1-designed phages were given to a patient under compassionate use

    Radical Numerics reports that phage variants designed with its Omnii-1 genome language model were administered to a patient with an antibiotic-resistant bacterial infection under an authorized, physician-led compassionate-use pathway, after a cocktail containing them eliminated the patient's isolate in vitro. The company calls it the first clinical use of AI-designed phages and does not disclose the patient's clinical course or outcome.

  2. Andrzej Górski, head of the Hirszfeld Institute's Bacteriophage Laboratory, wins the Prime Minister's Award

    Prof. Andrzej Górski, head of the Bacteriophage Laboratory at the Ludwik Hirszfeld Institute of Immunology and Experimental Therapy (IIET PAS), is one of six recipients in the scientific-research category of the 33rd Prime Minister's Award. He was recognised for research on using bacteriophages against drug-resistant bacterial infections and their potential application in other pathologies, and for promoting ethical principles in science.

  3. Phage prohead proteases activate CBASS antiphage immunity (Science)

    A Science paper by Samuel J. Hobbs and Philip J. Kranzusch reports that phage prohead protease activity activates the CD-NTase enzymes of bacterial CBASS defence: the authors reconstitute CBASS recognition of phage T4 in vitro, identify cleavage of a CD-NTase activation loop as the trigger of immune signal synthesis, and show that phage prohead proteases activate CBASS in vivo, explaining how immunity is initiated late during infection. Structure-based analyses identify activation loops in clade A, D and G CD-NTases.

  4. TattleTail identifies canonical pyocin gene clusters in Pseudomonas aeruginosa

    TattleTail is a rule-based bioinformatic pipeline for identifying canonical pyocin-encoding gene clusters in Pseudomonas aeruginosa. It targets the characteristic trpE–trpG-associated loci, combining conserved pyocin genes with exclusion of canonical phage features to distinguish these clusters from prophage regions. It complements existing prophage prediction tools.

  5. WACCBIP–DAAD master’s scholarships in infectious-disease cell biology

    Graduates who are nationals or permanent residents of Sub-Saharan African countries can apply for an MPhil in Molecular Cell Biology of Infectious Diseases at the University of Ghana. Scholarships support up to 24 months of study. Applicants need an above-average first degree completed within the last six years. The DAAD portal deadline is November 12, 2026.

  6. Phylogeny-agnostic machine learning predicts strain-level phage–host interactions from genomes (Nature Microbiology)

    A Nature Microbiology study from Lawrence Berkeley National Laboratory, UC Berkeley and Penn State presents a phylogeny-agnostic machine-learning framework that predicts strain-level phage–host interactions across diverse bacterial genera from genome sequences alone, matching species-specific methods (AUROC 0.67–0.94) across six datasets (115,037 interactions, 949 bacterial strains, 518 phages). Experimental validation of 1,240 predicted E. coli phage–host interactions gave an AUROC of 0.84, and model-guided cocktail design reached up to 97.5% bacterial coverage with five phages.

  7. HIDEN-SEQ: transposon-insertion sequencing that links phage genes to selectable phenotypes (Nature Microbiology)

    A Nature Microbiology study from ETH Zürich, University Hospital Basel, the University of Basel and the University of Lausanne presents HIDEN-SEQ (hidden Acr-enabled transposon-insertion sequencing), which systematically links viral genes to selectable phenotypes. Using phage T4 it reproduced the established gene essentiality map, and it is portable to non-model phages, revealing conditionally essential genes in several bacterial hosts and conditions, including previously unknown antidefence factors matched to specific antiviral defences.

  8. Armata receives $3.7 million more from the U.S. Department of War for AP-SA02 Phase 3

    Armata Pharmaceuticals has received an additional $3.7 million in non-dilutive funds from the U.S. Department of War to support the Phase 3 programme of AP-SA02, its phage cocktail for complicated Staphylococcus aureus bacteremia. It is the first funding received specifically for Phase 3 execution under a previously announced award made through the Medical Technology Enterprise Consortium, and brings cumulative Department of War funding under that award to approximately $32.4 million.

  9. Armata presents data on controlled genetic diversity in AP-SA02 at ISSSI 2026

    Armata Pharmaceuticals announced an oral presentation on September 21, 2026 at the 20th International Symposium on Staphylococci and Staphylococcal Infections (Banff, September 20-24) reporting that defined genetic diversity in its AP-SA02 phage cocktail may enhance killing of certain Staphylococcus aureus clinical isolates. When a component phage was grown on isolates from the diSArm Phase 1b/2a study, select variants became enriched, and a phage stock lacking them showed reduced activity against some isolates; Armata says it maintains these variants through controlled manufacturing across clinical lots.

  10. HydroPhage: a hyaluronan hydrogel that delivers phage over one week in a mouse wound infection model (Nature Communications)

    A Nature Communications study from Stanford University and collaborators used a mouse model of established Pseudomonas aeruginosa wound infection to compare phage route, dose and frequency: topical, but not systemic, delivery reduced wound bacterial burden, and phage resistance emerged rapidly, suggesting a benefit from high, repeated doses. The team then developed HydroPhage, a hyaluronan-based hydrogel with dynamic covalent crosslinks that delivers high-titer phage over one week.

  11. HEDROS describes how its PhageChooser platform builds farm-specific phage cocktails for shrimp

    HEDROS outlines the four stages of its AI-driven PhageChooser platform: sampling farm water, sediment and shrimp to identify and characterise the pathogens present (the post focuses on Vibrio parahaemolyticus); AI-driven matching of isolates against its phage library to select cocktail candidates; formulation, including its FAGOX phage-based technology for shrimp production; and field validation with regulatory submission and technical assistance.

  12. Australia's three-year GMP exemption for small-batch phage therapy products takes effect

    Australia's Therapeutic Goods Administration says a three-year Good Manufacturing Practice exemption for the domestic manufacture of small-batch bacteriophage therapy products, used to treat an infection in a specific person or a small number of people, commenced on 8 September 2026 and stays in force until 7 September 2029. The change, made by the Therapeutic Goods Legislation Amendment (2026 Measures No. 1) Regulations 2026, follows the TGA's late-2025 public consultation.

  13. Armata announces J Mol Biol structural study of its therapeutic phiKMV-like phage Ar-KM

    Armata Pharmaceuticals announced a Journal of Molecular Biology paper, with Gino Cingolani's group at UAB, presenting a cryo-EM structural atlas of Ar-KM, a phiKMV-like phage targeting Pseudomonas aeruginosa (the AP-PA02 program). The work describes how the phage keeps its genome packaged before infection, an enzyme activity that helps it penetrate the cell envelope, and a protein that enables genome release.

  14. Phage PAK_P3 genome folding and host chromosome rearrangement during Pseudomonas aeruginosa infection (Science Advances)

    Bignaud, Lamy-Besnier, Koszul, Debarbieux, Marbouty and colleagues followed the 3D organization of the virulent phage PAK_P3 genome during infection of Pseudomonas aeruginosa. The phage genome rapidly decondenses into a specific 3D organization that reflects its transcriptional program while the host genome decondenses as gene expression wanes, and specific contacts between the phage genome and the host chromosome show how the phage exploits its host's spatial genome architecture.

  15. AI-designed viruses are a test of whether biosecurity can keep pace

    Tuck Seng Wong and Kang Lan Tee (University of Sheffield) write in The Conversation that a study in which AI models designed complete bacteriophage genomes, some producing working viruses in the laboratory, shows safeguards must develop alongside the technology. They describe layers from model training-data restrictions and DNA-synthesis screening to laboratory oversight, research-funder policy and public-health surveillance, and note that the study does not show AI can design a pandemic virus.

  16. Nature has spent billions of years fighting bacteria – AI could help us learn its secrets

    Martha Clokie and Andrew Millard (University of Leicester) write in The Conversation that, after Stanford researchers used AI to design a complete ΦX174-based phage genome, the more useful question is whether AI can explain how natural phages work. They propose mining collections of naturally occurring phages to link DNA sequence, protein structure and phage behaviour (for example host range and defeat of bacterial defences), with every prediction still tested experimentally.

  17. Theraphage Lab publishes the book Bacteriophage-Based Vectors in Gene Therapy

    Theraphage Lab announces Bacteriophage-Based Vectors in Gene Therapy by Roderick Slavcev, Julia Lumini, Krish Devgan, Deborah Pushparajah, Kate Nagge and Alexandra Slavcev, available from Cambridge Scholars. The book covers the use of phages to build targeted gene delivery systems, vaccines and immunotherapeutics, including phage types, phage display, genomic and chemical manipulation, hybrid vectors and biomanufacturing.

  18. Inserm Phage Therapy Booster Programme: call for letters of intent to build a national phage therapy consortium

    Inserm's Phage Therapy booster programme, led by its Health technologies and Immunology, inflammation, infectiology and microbiology institutes, will fund a single three-year consortium of 10-12 participants (individual researchers or teams) working on phage biotechnology and bioproduction, preclinical frameworks and the societal impact of phage therapy. The call for letters of intent opened on 10 July 2026 and closed on 18 September 2026 at 5:00 PM; the programme kick-off meeting is scheduled for 28 January 2027.

  19. The biology of jumbo phages (Nature Communications Review)

    A Nature Communications Review by Sam P. B. van Beljouw and Li Yuping (Biozentrum, University of Basel) on jumbo bacteriophages, whose double-stranded DNA genomes exceed 200 kb. It covers their diversity, evolutionary origins, distinctive morphologies and lifecycles, interactions with bacterial hosts and potential for biotechnology and therapy, with a focus on, but not limited to, the Chimalliviridae phages.

  20. A meta-analysis of infant gut viromes reveals global patterns in bacteriophage community assembly and functional capacity over the first three years of life

    A meta-analysis of 12 infant cohorts across 8 countries (1,893 samples from 999 infants) models gut virome development over the first three years of life. Viral richness rose significantly over the first eight months alongside a loss of community evenness, and infant viromes became more similar with age; the transition to a stable state involved fewer extracellular temperate phages and shifts in phage-encoded auxiliary metabolic genes.

  21. Bacteriophages hijack 2′,3′-cNMPs to enhance transposase-mediated phage DNA integration in Acinetobacter baumannii (Science Advances)

    Cui and colleagues report in Science Advances that Acinetobacter baumannii makes 2′,3′-cyclic nucleotide monophosphates (2′,3′-cNMPs) with the ribonuclease RnaA and senses them through the receptor protein CRPAb, which affects the interaction with the promoters of target genes. Bacteriophages raise 2′,3′-cNMP levels to up-regulate transcription of the transposases and Mu-like integrases required for phage DNA integration, showing that phages can hijack this bacterial signal.

  22. Prevalent gut phages encode modular adhesins mediating epithelial binding and endoplasmic reticulum trafficking

    A high-throughput platform identified gut phages that adhere to epithelial layers and the immunoglobulin (Ig)-like domain proteins that mediate it: displayed on a non-adherent phage, they confer epithelial binding and internalization in vitro and longer retention in the mouse gut. Phages encoding these adhesins include crAss-like phages and myoviruses related to the proposed Flandersviridae family, and internalized phages traffic to the endoplasmic reticulum through the Golgi apparatus.

  23. Single-phage profiling illuminates viral individuality during bacterial cell fate determination

    Parallel sequential fluorescence in situ hybridization (par-seqFISH) profiled the transcriptional activity of individual phage lambda genomes during synchronized infection of E. coli. Cells pursuing lysogeny show consensus activity among all their phages, whereas lytic cells may contain phages with lysogenic activity, supporting the idea that consensus among coinfecting phages is required for dormancy.

  24. Theomophage: massive, parallel phage outbreaks in cellulose-degrading compost microbial communities (Science Advances)

    Meijer, Skiadas, Rainey, Hogeweg and Dutilh tracked viral dynamics in 20 compost-derived microbial communities over one year and observed massive, parallel outbreaks of Theomophage, a previously uncharacterized member of the Schitoviridae that reached up to 74% of metagenomic reads, the largest bacteriophage outbreak documented to date. Theomophage stayed genetically stable during outbreaks, but experimental migration of viral communities triggered rapid evolution through recombination and new mutations.

  25. Single nucleotide variants drive evolutionary phage-host arms race in anaerobic carbon dioxide-converting microbiome

    Metagenomics, metatranscriptomics and metabolic modelling followed a thermophilic CO2-converting (biomethanation) trickle bed reactor over 353 days of stepwise gas-feed perturbations, tracking single nucleotide variant trajectories in both prokaryotes and viruses. System destabilization triggered a viral bloom, and some community members recovered from phage infection through targeted modifications of their defense systems.

  26. DepoCatalog maps Klebsiella phage depolymerases and introduces the DepoCat database

    The study presents DepoCatalog, an experimentally validated collection of 129 recombinantly prepared Klebsiella phage depolymerases across 75 KL-types, and proposes a five-class framework for their diversity. The accompanying DepoCat database reports 131 depolymerases and supports exploration by capsule-type specificity or structural classification.

  27. Phage infectivity prediction across Pseudomonas isolates

    Researchers profiled 95 Pseudomonas phages against 99 clinical isolates and trained strain-specific models to predict infectivity. In a single held-out strain in vivo, the model-designed cocktail produced a higher median CFU reduction than the expert-designed cocktail.

  28. PHAGE4DAIR: €14.9 million Horizon Europe trial of phage therapy for Staphylococcus aureus prosthetic joint infections

    PHAGE4DAIR, a Horizon Europe project coordinated by Qeen Biotechnologies (Canada), runs from 1 June 2026 to 31 May 2031 with an EU contribution of €14,869,038.73. It is a multicenter, randomized, double-blind, placebo-controlled, adaptive Phase I/II trial of a GMP-manufactured five-phage cocktail targeting Staphylococcus aureus in prosthetic joint infections treated with DAIR (debridement, antibiotics and implant retention), with phages given intraoperatively and intravenously alongside standard-of-care antibiotics.

  29. Phage-encoded factor stimulates DNA degradation by the Hna anti-phage defense system

    Biochemistry, cryo-electron microscopy and single-molecule imaging show that Hna, a broadly distributed anti-phage system that triggers abortive infection, is a 3'-5' single-stranded DNA exonuclease forming an auto-inhibited dimer under physiological ATP. A phage-encoded single-stranded DNA-binding protein (5A SSB) destabilizes the dimer and drives dysregulated nuclease activation, while phage escape mutants encode SSB variants that evade Hna.

  30. Phage satellites induced by virulent phages are mobilized by natural competence leading to phage resistance in a new host

    More than two-thirds of Streptococcus thermophilus strains harbor a phage satellite structurally similar to Staphylococcus aureus pathogenicity islands (SaPIs). Virulent phages can trigger induction of these satellites, and their DNA can then be transferred into a new strain by natural competence, which enhances the recipient strain's resistance to virulent phages.

  31. The honey bee triad: a comprehensive catalogue of phages in the Apis mellifera gut microbiome

    A metagenomic study of 450 virus-enriched honey bee gut samples from 63 hives across eight European countries, three seasons and three gut sections catalogues a diverse phageome, including many phages that appear to belong to novel taxa and a core set of 97 highly prevalent phages. It also identifies potential auxiliary metabolic genes, such as a sulfur metabolism gene carried by predominantly temperate phages that likely infect mutualistic honey bee core bacteria.

  32. Nature Communications Perspective: moving phage therapy beyond anecdote to clinical reproducibility

    A Nature Communications Perspective by Aleksandra Petrović-Fabijan and Stephen T. Abedon argues that phage therapy must move beyond anecdote to clinical reproducibility, and identifies three foundational pillars to be addressed through interdisciplinary collaboration: drug delivery, treatment effectiveness and managing bacterial resistance.

  33. Bridging continuous and discrete evolution through a controllable, hypermutagenic phage-bacteria system

    Lytic selection and evolution (LySE) is a T7-based method for near-continuous directed evolution of bacterial gene clusters that keeps discrete checkpoints: a hypermutagenic T7 DNA polymerase mutates a target gene cluster carried on a T7 phagemid, and alternating lysis and transduction cycles discard off-target genomic mutations. It evolved a 25-fold increase in tetA-encoded tigecycline resistance in 5 cycles and a 50.9% increase in endpoint biomass of a strain using ethylene glycol as its sole carbon source (Nature Microbiology, 2026).

  34. V- and VL-scores unveil viral signatures and origins of protein families

    V-score and VL-score are annotation-free metrics that quantify the "virus-likeness" of protein families and genomes, released with an open-access searchable database, V-Score-Search. Applied to public protein databases they link 19-59% of protein families with viruses (a 5-8x increase over current estimates) and detect viral genomes, prophages and host-derived auxiliary viral genes in fragmented sequences more efficiently than existing approaches.

  35. Quantifying phage-host dynamics using droplet microfluidics

    A high-throughput droplet microfluidics platform co-encapsulates individual phages and bacteria to quantify single phage infection events, with control over exposure time and the phage-to-bacteria ratio. It measures lysis events and lysis kinetics without the progeny-driven infection that confounds bulk cultures, and is applicable to diverse phage-host systems.

  36. Capsular specificity in temperate phages of Klebsiella pneumoniae is driven by diverse receptor-binding enzymes

    The study links temperate-phage capsule specificity with diverse receptor-binding proteins, including classical depolymerases and SGNH-domain hydrolases predicted to deacetylate polysaccharides. The team also shared English and Polish comics of the discovery, created with illustrator Paweł Piechnik.

  37. Nuclease–NTPase antiphage defence systems use conserved molecular features to control bacterial immunity

    Large-scale comparative cell biology and biochemistry of 16 bacterial nuclease-NTPase antiphage defence systems shows that protein-protein complex formation is a shared feature. The nucleases of the Pa AbpAB, Bt Hachiman and Ec PD-T4-8 systems degrade nucleic acids with highly degenerate recognition site preferences, while the Azaca system specifically targets modified phage genomic DNA (Nature Microbiology, 2026).

  38. Rage against the mean: a perspective on measuring fitness of individual phage particles

    A perspective arguing that traditional bacteriophage methods measure population averages and miss variation between individual particles. It advocates optical microscopy and flow cytometry approaches that can reveal phenotypic heterogeneity across the infection cycle: binding kinetics, genome entry, replication, coinfection dynamics and particle stability.

  39. Systematic review of phage therapy in people with cystic fibrosis: 51 patients in 19 studies (International Journal of Infectious Diseases)

    Terlizzi and colleagues report a systematic review in the International Journal of Infectious Diseases of phage therapy in cystic fibrosis: 19 studies covering 51 patients and 52 phage treatment courses, mostly against Pseudomonas aeruginosa. Microbiological improvement was reached in 35 of 51 cases (68.6%), FEV1 improved in 74% (20/27) and 41 of 52 had no adverse events; the authors conclude phage therapy appears generally safe and well tolerated and call for further well-designed studies given small, heterogeneous series.

  40. Conditional activation of Cas13 enforces lysogeny in a native type VI-A CRISPR host (Nature Microbiology)

    Godsil, Wei and Meeske report in Nature Microbiology that the Listeria seeligeri type VI-A CRISPR system restricts the lytic cycle of temperate phages but tolerates prophage acquisition and interferes with prophage induction through a non-abortive mechanism. When induction is attempted, Cas13 activation forces prophage re-integration and so maintains lysogeny, and during polylysogenic induction it restricts only the targeted phage; the authors say this lets type VI hosts acquire potentially beneficial prophages while mitigating lysis.

  41. High-molecular-weight PVP keeps spray-dried phage PEV1 stable at low to moderate humidity

    A Bioengineering & Translational Medicine study from the University of Sydney spray-dried phage PEV1 with polyvinylpyrrolidone (PVP) grades K15 to K100 and stored it for 180 days at 4, 22 and 40 °C and 15 to 53% relative humidity. At 33% relative humidity, high-molecular-weight PVPs (K40, K100) gave long-term stability while lower grades (K15, K25) lost 2–3 log10 of titre; degradation rose about tenfold above a water activity of 0.43, and at 40 °C and ≥43% RH titre losses were substantial even when the glass-transition offset exceeded 100 °C.

  42. Specific Caudoviricetes prophages are more common in colorectal cancer-associated Bacteroides fragilis (Communications Medicine)

    Damgaard and colleagues report in Communications Medicine that Bacteroides fragilis isolates from colorectal cancer (CRC) patients are infected with specific Caudoviricetes prophages significantly more often than controls, a finding made by pangenome-wide association in an isolate collection and validated in a faecal metagenome cohort of 877 individuals, where CRC patients were about twice as likely to have detectable levels of these phages (OR = 2.05). They describe it as the first link between one of the most implicated CRC driver bacteria and phages, and suggest phages as potential CRC biomarkers.

  43. Rip1: a prophage-encoded pore-forming protein that senses phage portal and terminase rings to defend bacteria (Nature)

    Patel and colleagues describe in Nature a 164-residue prophage-encoded defence protein, ring interacting pore 1 (Rip1), that is activated by the portal or small terminase proteins of infecting phages, oligomeric ring-shaped complexes essential for virion maturation. Rip1 uses these rings as a template to assemble into membrane-disrupting pores that inhibit phage virion assembly and cause premature death of the host cell; homologues are widely distributed across bacteria and defend against diverse phages.

  44. High-throughput methods leveraging robotics and computer vision for the development of therapeutic phage cocktails

    An automated screening platform combining liquid-handling robotics, standardized phenotypic assays and computer-vision enumeration screens large phage collections against clinical bacterial strain panels and has assessed more than 3.8 million phage-bacteria reactions. As an example, a six-phage cocktail (LBP-EC01) for urinary tract infections was active in vitro against 96.4% of 356 uropathogenic E. coli isolates, and 37 of 38 isolates from participants in a Phase 2b trial were sensitive to it.

  45. Fully synthetic Golden Gate assembly system for engineering a Pseudomonas aeruginosa phiKMV-like phage (PNAS)

    Sikkema and colleagues describe in PNAS an engineering platform for the phiKMV-like Pseudomonas aeruginosa phage 41S1 built on one-pot High Complexity Golden Gate assembly (HC-GGA): the genome is divided into synthesizable DNA fragments that assemble in a high-accuracy reaction, and phages are rescued by transformation into P. aeruginosa PAO1 or E. coli cells. Point mutations, insertions, deletions and fluorescence reporter genes were generated with near 100% success and minimal screening, providing a chassis for phages that broadly target P. aeruginosa.

  46. Microgravity reshapes T7 phage-E. coli coevolution aboard the International Space Station

    A PLOS Biology study by Huss, Chitboonthavisuk, Meger and colleagues reports the dynamics between T7 bacteriophage and Escherichia coli aboard the International Space Station: phage activity was initially delayed in microgravity but ultimately successful, and de novo mutations in both phage and bacteria enhanced fitness there. Deep mutational scanning of the phage receptor binding domain differed between terrestrial and microgravity conditions, and T7 variants built from microgravity selections could productively infect uropathogenic E. coli resistant to wild-type T7 on Earth.

  47. Case report: systemic phage therapy for implant-associated MRSA vertebral osteomyelitis

    An International Journal of Infectious Diseases case report from the Military University Hospital Prague describes a 60-year-old woman with chronic MRSA vertebral osteomyelitis and non-removable spinal instrumentation who received 35 intravenous doses of individualized antistaphylococcal phage therapy, approved by the national regulatory authority. It was well tolerated, and six months after finishing phage therapy and stopping all antibiotics she remained in good clinical condition without signs of relapse.

  48. Perfilyev et al.: 119,510 lytic phage genomes found in 3.6 million bacterial genome assemblies (Nature Microbiology)

    Perfilyev and colleagues analysed 3.6 million bacterial genome assemblies from 1,226 species in Nature Microbiology and found 119,510 lytic phage genomes, which they call bacterial assembly-associated phage sequences, a roughly five-fold increase in phages with associated hosts. The set includes previously undescribed phage clusters, expands genera such as Seoulvirus from 16 to more than 300 members, and contains close relatives of therapeutically used lytic phages, suggesting that clinical isolate sequencing unknowingly archives potential phage candidates.

  49. Phage lambda small RNA PreS hijacks host dnaN to enhance DNA replication and the lytic cycle (Molecular Cell)

    Silverman and colleagues used RIL-seq to map RNA–RNA interactions in Escherichia coli during phage lambda infection, reported in Molecular Cell, and identified a phage-encoded small RNA, PreS (phage replication enhancer sRNA), embedded in the early left operon. PreS regulates essential host genes including dnaN, which encodes the DNA polymerase β sliding clamp, thereby enhancing DNA replication and fine-tuning the phage lytic cycle.

  50. Silver nanoparticles templated by phage M13 show high antibacterial activity and slower resistance in vitro (Langmuir)

    Silver nanoparticles templated by the Escherichia coli phage M13 showed unusually high potency against Gram-negative pathogens including E. coli, Pseudomonas aeruginosa and Vibrio cholerae in vitro, and elicited resistance more than 10-fold more slowly than commercial silver nanoparticles. The authors attribute the activity to the nanoparticles' structure rather than to the phage.

  51. Mathematical model of encapsulated bacteriophage dynamics in the gastrointestinal tract (Mathematical Methods in the Applied Sciences)

    Barril, Bardina and Cuadrado (Universitat Autònoma de Barcelona) propose a mathematical model of phage therapy with encapsulated bacteriophages in the gastrointestinal tract. Microcapsules protect phages from degradation in acidic environments such as the stomach, but phages inside them cannot infect bacteria, so efficient encapsulation needs microcapsules that are permeable to the phages they carry, a trade-off the model studies in different biological scenarios.

  52. Directed evolution of phages in biofilms improves Pseudomonas aeruginosa control through better LPS recognition (Nature Communications)

    Biofilm-adapted mutants of Pseudomonas phage PE1, evolved on a cystic fibrosis-derived P. aeruginosa isolate, controlled biofilms better in vitro under conditions mimicking the CF lung. Mutations in tail fiber and baseplate genes improved adsorption and enabled recognition of truncated LPS variants (Meneses et al., Nature Communications).

  53. Targeted bacteriophage T4 nanoparticles reverse HIV-1 latency in human T cell line models (iScience)

    Bacteriophage T4 capsid nanoparticles arrayed with a CD4-binding DARPin or the HIV-1 gp140 envelope trimer reactivated HIV-1 latency in J-Lat T cell models and primary T lymphocytes without global T cell activation or cytokine storm, independently of the PKC and NFAT pathways. The authors conclude that engineered non-infectious phages could be exploited for HIV-1 cure and targeted T cell therapies.

  54. Phage diversity mirrors bacterial strain diversity in the honey bee gut microbiota (Nature Communications)

    Paired bacterial and viral metagenomes from the guts of 49 individual honeybees, with a phage-bacteria interaction network built from CRISPR spacer matches and genome homology, show that viral and bacterial diversity are correlated, particularly at bacterial strain level and when the interaction network is considered (Ndiaye, Bonilla-Rosso, Mazel and Engel, Nature Communications).

  55. Phage cocktail reduces fire blight in pear flowers without altering the floral microbiome (Applied and Environmental Microbiology)

    A phage cocktail targeting Erwinia amylovora, the cause of fire blight, greatly reduced pathogen numbers and disease symptoms in inoculated pear flowers without significantly altering the resident floral microbiome (Holtappels, Wu, Koskella and Roh, Applied and Environmental Microbiology).

  56. Rational design of Entelli-02, a hospital-specific phage cocktail for Enterobacter cloacae complex infections (Nature Microbiology)

    Entelli-02 is a five-phage cocktail built from The Alfred Hospital's decade-long isolate collection against multidrug-resistant Enterobacter cloacae complex; it covers 88% of the hospital's 206 isolates and reduced bacterial load in septicaemic mice by more than 99%. It was produced as a therapeutic-grade product ready for clinical use (Subedi et al., Nature Microbiology).

  57. Jessica was interviewed on the Development & Research podcast, a new video interview series by biotech investor/economist Ross Rheingans-Yoo about people doing things differently in clinical trials and drug development.

    They discussed operational challenges with phage therapy in academic versus clinical settings, why most trials fail due to execution issues rather than fundamental problems with phages, and more!

    Check out Development & Research’s other interviews on clinical drug trial inefficiencies and those building the solutions — they are excellent!

  58. The Interdisciplinary Meeting on Antimicrobial Resistance and Innovation (IMARI) is coming up early next year on January 28-30, 2026 in Las Vegas.   The meeting will bring together the top scientists, innovators, and cross-sector leaders to address one of health care’s most resistant problems: AMR. But we can’t do that without your contributions.   ASM and IDSA are looking for the latest research across the innovation pipeline – from uncovering emerging resistance mechanisms to advancing next-generation therapeutics and accelerating translation into clinical studies.   Mark your calendar for the meeting (registration will open soon!) and begin preparing your abstract to submit by October 1, 2025. I hope to see you – and your research – at the meeting!

  59. Naia Novy (University of Wisconsin-Madison) and colleagues published a new paper on multiobjective machine learning design of phage specificity, showing deep learning can successfully design T7 phages with precisely tuned infectivity, specificity, and generality across diverse E. coli strains. They could even make T7 have the completely opposite host range compared to wild type, just by changing up its RBP according to the ML model's suggested sequence!

  60. The Interdisciplinary Meeting on Antimicrobial Resistance and Innovation (IMARI) is coming up early next year on January 28-30, 2026 in Las Vegas.   The meeting will bring together the top scientists, innovators, and cross-sector leaders to address one of health care’s most resistant problems: AMR. But we can’t do that without your contributions.   ASM and IDSA are looking for the latest research across the innovation pipeline – from uncovering emerging resistance mechanisms to advancing next-generation therapeutics and accelerating translation into clinical studies.   Mark your calendar for the meeting (registration will open soon!) and begin preparing your abstract to submit by October 1, 2025. I hope to see you – and your research – at the meeting!

  61. Join Evergreen 2025 Virtually!

    Phagebiotics Research Foundation is excited to announce a virtual attendance option for the 26th Biennial Evergreen International Phage Meeting

    📅 August 3–8, 2025 | 📍 Knoxville, Tennessee

    In response to overwhelming demand and ongoing global travel challenges, we're making it possible for phage enthusiasts, researchers, and students around the world to participate in real time—no matter where you are.

    For a registration fee of $125, virtual participants will receive: • Live-stream access to keynote sessions and oral presentations • Moderated Q&A access via WhatsApp, where you can engage directly with speakers through a live, dedicated group • Daily email updates with livestream links

    💡 Your contribution supports scholarship opportunities for students and researchers from low- and middle-income countries, ensuring inclusive participation and continued innovation in the field of phage research.

    🧬 Philanthropy from within is a powerful way to advance phage science.

    🎟️ Register now

    Once registered, we’ll send daily livestream links to the email address you provide. Please ensure it’s the best email for day-of access.

    We look forward to having you join us online for Evergreen 2025 – Knoxville as we celebrate over five decades of scientific progress and global collaboration in phage research.

    Tom Denes & Ria Kaelin, Co-Chairs, 26th Biennial Evergreen International Phage Meeting Phagebiotics Research Foundation

  62. As part of the Evergreen Phage Meeting, Phages for Global Health is organizing a pre-conference workshop on phage purification technologies.

    It will include six experts giving short presentations on different purification techniques that could be used to prepare phages for therapeutic applications.

    If you aren't able to attend the conference in person, but are interested in attending this workshop virtually, please register via this online form.

  63. Clara Torres-Barceló (University of Montpellier) and colleagues introduce the Phylogenetic Host-Range Index (PHRI) — a new metric to classify phages as specialists or generalists based on bacterial genetic diversity.

    Using phages infecting Ralstonia spp. from Mauritius and Reunion, they reveal context-dependent virulence–host range trade-offs and show generalist phages are more frequently targeted by CRISPR-Cas systems. Their work bridges ecological theory and application in biocontrol.

  64. Phages 2025 Oxford — 15th International Conference

    Dates: 01-02 September 2025

    Email: PhageOxford@gmail.com

    X: @PhageOxford; Hashtag: #PhgOx25

    Important Dates: • Poster Abstracts: 15 Aug 2025 • Digital Posters and flash-talk videos: 25 Aug 2025 • Registration deadline: 29 Aug 2025

    We warmly invite you to attend our 15th annual Oxford bacteriophage conference – the longest running phage conferences series in Europe, and the second longest running phage conference globally – which will be held on 01-02 September 2025 as a ‘virtual/in-person’ hybrid event at St Edmund Hall, Oxford, UK. With the rapidly growing interest in bacteriophage therapy to tackle antimicrobial resistance across the globe, we believe this conference will provide an excellent platform for the bacteriophage community to share new ideas, network with colleagues and develop new collaborations.

  65. Kiwa is a membrane-embedded defence supercomplex activated at phage attachment sites (Cell)

    Zhang and colleagues, including Franklin Nobrega, report in Cell that the widespread two-component Kiwa defence system, a transmembrane sensor KwaA and a DNA-binding effector KwaB, assembles into a large membrane-associated supercomplex (cryo-EM). On phage binding, KwaA senses infection at the membrane and KwaB binds the ejected phage DNA, inhibiting replication and late transcription without killing the host cell. The phage DNA-mimic protein Gam directly binds and inhibits KwaB, but co-expression with the Gam-targeted RecBCD system restores protection by Kiwa.

  66. Join Evergreen 2025 Virtually!

    Phagebiotics Research Foundation is excited to announce a virtual attendance option for the 26th Biennial Evergreen International Phage Meeting

    📅 August 3–8, 2025 | 📍 Knoxville, Tennessee

    In response to overwhelming demand and ongoing global travel challenges, we're making it possible for phage enthusiasts, researchers, and students around the world to participate in real time—no matter where you are.

    For a registration fee of $125, virtual participants will receive: • Live-stream access to keynote sessions and oral presentations • Moderated Q&A access via WhatsApp, where you can engage directly with speakers through a live, dedicated group • Daily email updates with livestream links

    💡 Your contribution supports scholarship opportunities for students and researchers from low- and middle-income countries, ensuring inclusive participation and continued innovation in the field of phage research.

    🧬 Philanthropy from within is a powerful way to advance phage science.

    🎟️ Register now

    Once registered, we’ll send daily livestream links to the email address you provide. Please ensure it’s the best email for day-of access.

    We look forward to having you join us online for Evergreen 2025 – Knoxville as we celebrate over five decades of scientific progress and global collaboration in phage research.

    Tom Denes & Ria Kaelin, Co-Chairs, 26th Biennial Evergreen International Phage Meeting Phagebiotics Research Foundation

  67. As part of the Evergreen Phage Meeting, Phages for Global Health is organizing a pre-conference workshop on phage purification technologies.

    It will include six experts giving short presentations on different purification techniques that could be used to prepare phages for therapeutic applications.

    If you aren't able to attend the conference in person, but are interested in attending this workshop virtually, please register via this online form.

  68. Is passion enough for to keep our industry going? Jennifer Leeds (ex-Novartis; one of the microbiologists who had to help shut down Novartis’ infectious disease department) published a new perspective on antibiotic R&D talent drain, sharing her thoughts on how workforce collapse threatens future antimicrobial innovation pipelines, and what she sees as possible solutions.

  69. Bacteriophages as Agents for Plant Disease Control: Where Are We After a Century? (Viruses review)

    Review by Choudhary, Bankole, McDuffee, Parajuli, Poudel, Balogh, Paret and Jones in Viruses on bacteriophages as biocontrol agents against plant bacterial diseases, as an alternative to antibiotics. It discusses barriers to implementation including environmental stability, delivery efficiency, host specificity and potential bacterial resistance, and highlights genetic-engineering and nanotechnology strategies to improve the stability, efficacy and adaptability of phage-based treatments.

  70. The 9th International Conference on Bacteriology and Microbiology 2025 is a globally recognized scientific event bringing together researchers, microbiologists, healthcare professionals, and industry experts to explore the latest advancements in bacterial research and microbiological applications.

    Themed "Microbial Frontiers: Exploring Bacteria in Health, Industry, and the Environment," this two-day event will feature keynote lectures, oral and poster presentations, workshops, and networking sessions. Topics will include antimicrobial resistance, environmental microbiology, microbial diagnostics, and microbiome research.

    Head to Paris November 13-14, 2025 to connect with global experts and share insights that are shaping the future of microbiological science.

  71. Macrocyclic phage display identifies selective protease substrates for FAP-alpha and DPP4 (JACS)

    A phage display platform screens large libraries of chemically cyclized peptides carrying an affinity tag and a turn-on fluorescent reporter, so cleavage can be quantified in every selection round, to find selective substrates for a protease of interest. Applied to FAPα and DPP4, it identified substrates selective for each target, with potential as tools for basic biology and fluorescence image-guided surgery (Journal of the American Chemical Society).

  72. Why don't we have phage therapy yet? We want to understand why. Come join the fun by tuning into the Podovirus podcast!

    🎙️ Most recent episode: Dr. Marisa Azad, infectious disease physician at The Ottawa Hospital, shares her experience leading Canada's first-ever approved ‘n of 1’ phage therapy treatment for a prosthetic joint infection, and discusses what it took to make this happen!

    🎧 Listen: Podovirus on Spotify

    🎥 Watch: Podovirus on YouTube

    Subscribe to get the next episodes!

    🩺 Up next: We'll be talking to more clinicians, scientists and phage biotech executives about their experiences implementing phage therapy at their institutions, including the challenges and successes they've encountered along the way.

  73. You’re invited to submit an abstract to the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, chaired by Graham Hatfull (University of Pittsburgh) and Robert (Chip) Schooley (UCSD).

    Topics range from phage structure and assembly, evolution, and engineering to clinical trials, susceptibly testing, and host/immune responses.

    This is organized by The International Antiviral Society–USA (IAS–USA), and will be held October 12-14, 2025, in Washington, DC.

    Registration is open as of April 16, 2025! Check out the preliminary program here.

    Submit your late-breaking abstract by Aug 13!

    Presenting authors who are new investigators may qualify for a scholarship to cover the cost of registration.

  74. Genomic characterization of four Salmonella-specific bacteriophages and evaluation of their cocktail efficacy in milk (Food Science and Biotechnology)

    Jung and colleagues analysed the genomic, proteomic and functional characteristics of four bacteriophages (STP-1 to STP-4) targeting Salmonella Typhimurium, finding lysis-related genes (holin, endolysin, RZ-like spanins) and no genes linked to human toxicity or antibiotic resistance. A cocktail applied to milk at MOI 1,000 reduced bacterial counts by 2.11 log CFU/mL after 7 days, more than the same cocktails achieved on chicken breast in a previous study.

  75. Macrophage-induced reduction of bacteriophage density limits the efficacy of in vivo pulmonary phage therapy (Nature Communications)

    In mouse models of acute Pseudomonas aeruginosa pneumonia, depleting alveolar macrophages shortened the survival of adult male mice without raising lung bacterial load, yet lung P. aeruginosa levels were significantly lower in macrophage-depleted than in immunocompetent mice during phage treatment. A mathematical model and experiments indicated that alveolar macrophages phagocytose therapeutic phages and reduce phage density in the lungs (Zborowsky, Weitz, Debarbieux and colleagues).

  76. The Global Clinical Phage Rounds (GCPR) is an ongoing forum for discussing phage therapy cases and advances among clinicians and scientists.

    The organizers (Greg German, Gina Suh, Jon Iredell and colleagues) are excited to announce a special open 90-minute ‘Journal Forum’ session for their 23rd meeting on June 25, 2025 (5 AM PDT / 8 AM EDT / 2 PM CET / 10 PM AEDT).

    This session is open to the broader phage community—including patients, public, government, and industry—and will feature Drs. Jean Paul Pirnay, Sabrina Green, and Sarah Djebara discussing their foundational work on personalized, magistral phage therapy in Belgium.

    Read their recent paper here and a popular write-up here.

    Register to receive the Zoom link and recording.

    Submit questions in advance or during the session here.

    More info at https://phagerounds.com. Please share widely!

  77. You’re invited to submit an abstract to the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, chaired by Graham Hatfull (University of Pittsburgh) and Robert (Chip) Schooley (UCSD).

    Topics range from phage structure and assembly, evolution, and engineering to clinical trials, susceptibly testing, and host/immune responses.

    This is organized by The International Antiviral Society–USA (IAS–USA), and will be held October 12-14, 2025, in Washington, DC.

    Registration is open as of April 16, 2025! Check out the preliminary program here.

    Submit your late-breaking abstract by Aug 13!

    Presenting authors who are new investigators may qualify for a scholarship to cover the cost of registration.

  78. You’re invited to submit an abstract to the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, chaired by Graham Hatfull (University of Pittsburgh) and Robert (Chip) Schooley (UCSD).

    Topics range from phage structure and assembly, evolution, and engineering to clinical trials, susceptibly testing, and host/immune responses.

    This is organized by The International Antiviral Society–USA (IAS–USA), and will be held October 12-14, 2025, in Washington, DC.

    Registration is open as of April 16, 2025! Check out the preliminary program here.

    Submit your late-breaking abstract by Aug 13!

    Presenting authors who are new investigators may qualify for a scholarship to cover the cost of registration.

  79. The great phage escape: activating and escaping lactococcal antiphage systems, including Audmula (PNAS)

    A PNAS study isolated 66 phage escape mutants against 13 plasmid-encoded lactococcal antiphage systems and found 15 mutated genes, and proposes that the Audmula system modifies the host cell wall, delaying lysis and release of progeny phages. The authors note the findings benefit the dairy industry and may be useful for biotechnological or biomedical applications.

  80. You’re invited to submit an abstract to the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, chaired by Graham Hatfull (University of Pittsburgh) and Robert (Chip) Schooley (UCSD).

    Topics range from phage structure and assembly, evolution, and engineering to clinical trials, susceptibly testing, and host/immune responses.

    This is organized by The International Antiviral Society–USA (IAS–USA), and will be held October 12-14, 2025, in Washington, DC.

    Registration is open as of April 16, 2025! Check out the preliminary program here.

    Submit your late-breaking abstract by Aug 13!

    Presenting authors who are new investigators may qualify for a scholarship to cover the cost of registration.

  81. Bradley Cook (Cytophage Technologies) and Alexander Hynes (McMaster University) published a new paper on re-evaluating phage therapy criteria. They examine three commonly applied criteria for excluding phages from therapy: the lack of virulence/antibiotic resistance, the inability to transduce, and being strictly lytic. For each, they assess the risk posed, tools for determining the criteria, and the potential impact.

  82. Hi everyone,

    I'm a researcher based in Argentina working on a phage-based biocontrol project targeting spoilage bacteria in industrial fermentations, particularly lactic acid bacteria like Lactobacillus plantarum, L. fermentum, and L. brevis. Despite screening a wide variety of environmental samples, we have not yet observed any plaques on our target strains. We’d be really grateful for any advice or insights regarding common pitfalls when working with phages for Lactobacillus spp.

    Thanks in advance for your help, Cecilia.

  83. Reminder to register for the Phage Protein Meeting, taking place in Ghent, Belgium, on September 10-11, 2025. This interdisciplinary conference will bring together experts working with phage lysins/endolysins, tail fibers, tailspikes, depolymerases, and tailocins, fostering collaboration and knowledge exchange for applications in human and veterinary health, food conservation, and beyond.

    https://phageproteinmeeting.ugent.be/

    • Registration/abstract submission: until June 15, 2025 • Late registration: from June 16, 2025

    Daniel Nelson (nelsond@umd.edu) on behalf of the organizing committee

  84. Phage DisCo: targeted discovery of bacteriophages by co-culture (mSystems)

    Rand and colleagues present Phage DisCo (phage discovery by co-culture) in mSystems: bacterial strains that are isogenic except for fluorescent tags and one perturbation expected to affect phage infection are co-cultured on the same screening plate, so differential plaquing, visible by fluorescence, implies the perturbation prevents infection. They validate the method with characterized phages and show it can target phages from receptors to phage defence systems, without isolating and characterizing many redundant phages.

  85. The gut virome in association with the bacteriome in gastrointestinal diseases and beyond (Precision Clinical Medicine)

    Review by Feng et al. in Precision Clinical Medicine on the human gut virome, 90%-95% of which is phages. It examines how the virome develops and how diet, environment, host genetics and immunity shape it, its associations with various diseases, its interactions with gut bacteria and the immune system, and emerging clinical applications.

  86. The International Antiviral Society-USA (IAS-USA) is hosting a webinar called 'An Introduction to Bacteriophages: Basic Science and Clinical Applications', taking place on June 30, 2025.

    This webinar consists of 2 lectures by Graham F. Hatfull, PhD, who will review the basic science of phages, and Robert T. Schooley, MD, who will provide an overview of the clinical applications.

    It's designed for clinical decision makers and those new to the topic, and will prove information to those who have some experience in this field and would like a review of these concepts.

  87. Hello phage community! 😃 We’re looking for a T-series E. coli K-12 phage (e.g., T2, T4, T7) engineered to express a red fluorescent protein (e.g., mCherry) fused to a capsid or tail protein — to track intact virions by microscopy. No inducible promoters — we want to see the phage, not just expression! Tracking during infection also welcome.

    Got leads or willing to collaborate? Contact me: dany.huelgs@gmail.com

  88. West African–South American pandemic Vibrio cholerae encodes multiple distinct phage defence systems (Nature Microbiology)

    Adams and colleagues report in Nature Microbiology that the two genetic signatures defining the West African–South American (WASA) lineage of Vibrio cholerae, responsible for the 1991-2001 Latin American cholera epidemic, encode multiple anti-phage defence systems. The WASA-1 prophage encodes an abortive-infection system, WonAB, that makes the lineage resistant to the predatory vibriophage ICP1, and genes on Vibrio seventh pandemic island II encode a modification-dependent restriction system and a new Shedu-family member active against vibriophage X29; the authors propose these defences contributed to the lineage's success.

  89. Horizon Europe 2025 call for phage-therapy clinical trials

    The European Commission’s 2025 call sought multicentre, multinational randomised trials of phage therapies for difficult-to-treat bacterial infections, alone or alongside standard care. The call is closed; its deadline was September 16, 2025. FundsforNGOs lists a €45 million topic budget and contributions around €15 million.

  90. Phage-mediated horizontal transfer of Salmonella enterica virulence genes with regulatory feedback from the host (iMeta 2025)

    She et al. retrieved 5,178 viral sequences encoding 12 Salmonella enterica virulence genes from the IMG/VR database and compared them with 466,136 S. enterica genomes from EnteroBase. Virulence genes including iacP, mgtB, misL and fliC were widely distributed in phages and S. enterica across North America, Europe and Asia, and overexpression of the highly conserved regulator csrA inhibited prophage cyclization and release by upregulating the prophage cI repressor.

  91. You’re invited to submit an abstract to the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, chaired by Graham Hatfull (University of Pittsburgh) and Robert (Chip) Schooley (UCSD).

    Topics range from phage structure and assembly, evolution, and engineering to clinical trials, susceptibly testing, and host/immune responses.

    This is organized by The International Antiviral Society–USA (IAS–USA), and will be held October 12-14, 2025, in Washington, DC.

    Registration is open as of April 16, 2025! Check out the preliminary program here.

    Submit your late-breaking abstract by Aug 13!

    Presenting authors who are new investigators may qualify for a scholarship to cover the cost of registration.

  92. You’re invited to submit an abstract to the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, chaired by Graham Hatfull (University of Pittsburgh) and Robert (Chip) Schooley (UCSD).

    Topics range from phage structure and assembly, evolution, and engineering to clinical trials, susceptibly testing, and host/immune responses.

    This is organized by The International Antiviral Society–USA (IAS–USA), and will be held October 12-14, 2025, in Washington, DC.

    Registration is open as of April 16, 2025! Check out the preliminary program here.

    Submit your late-breaking abstract by Aug 13!

    Presenting authors who are new investigators may qualify for a scholarship to cover the cost of registration.

  93. You’re invited to submit an abstract to the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, chaired by Graham Hatfull (University of Pittsburgh) and Robert (Chip) Schooley (UCSD).

    Topics range from phage structure and assembly, evolution, and engineering to clinical trials, susceptibly testing, and host/immune responses.

    This is organized by The International Antiviral Society–USA (IAS–USA), and will be held October 12-14, 2025, in Washington, DC.

    Registration is open as of April 16, 2025! Check out the preliminary program here.

    Submit your late-breaking abstract by Aug 13!

    Presenting authors who are new investigators may qualify for a scholarship to cover the cost of registration.

  94. In Episode 45 of the International Antiviral Society (IAS-USA)’s Going anti-Viral podcast, Dr. Michael Saag speaks with Dr. Graham F. Hatfull (University of Pittsburgh) about Bacteriophages for the Treatment of Antimicrobial-resistant Bacterial Infections. They explore the promise and complexity of phage therapy against AMR pathogens, from phage diversity and clinical application to the challenges of scaling production and engineering synthetic phages for precision treatment. Don’t miss the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, which IAS-USA is hosting in October of this year!

  95. Benjamin Chan (Yale University) and colleagues published a new paper on outcomes from the first 9 adult CF compassionate use cases treated with personalized inhaled P. aeruginosa phage therapy at Yale. 5-18 days after phage therapy, they saw that sputum Pseudomonas decreased by multiple logs without altering sputum microbiome, and saw evidence of trade-offs that decreased Pseudomonas antibiotic resistance and bacterial virulence.

  96. Telomere bacteriophages are widespread and equip their bacterial hosts with potent interbacterial weapons (Science Advances 2025)

    Byers et al. report that telomere phages, which replicate their genomes as linear extrachromosomal elements, are widely distributed in bacteria and highly prevalent in Klebsiella species. In phage-host cells only a small set of phage proteins is expressed, including a toxin, the telocin, that kills other Klebsiella strains; the authors discuss using telocins for precision editing of microbial populations.

  97. You’re invited to submit an abstract to the inaugural Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, chaired by Graham Hatfull (University of Pittsburgh) and Robert (Chip) Schooley (UCSD).

    Topics range from phage structure and assembly, evolution, and engineering to clinical trials, susceptibly testing, and host/immune responses.

    This is organized by The International Antiviral Society–USA (IAS–USA), and will be held October 12-14, 2025, in Washington, DC.

    Registration is open as of April 16, 2025! Check out the preliminary program here.

    Submit your late-breaking abstract by Aug 13!

    Presenting authors who are new investigators may qualify for a scholarship to cover the cost of registration.

  98. Sabrina Green (KU Leuven) wrote a great perspective piece for Nature Microbiology on communicating the promise of phage therapy, her tips on how best to use social media (when memes? when papers?) to get more people to understand its promise and limits, and why she always makes time for science communication. A really nice reminder for us all!

    Also — I had no idea about the ‘hidden-locked-door-in-the-lab saga’ that jumpstarted Sabrina’s super successful twitter account!

  99. Phollow reveals in situ phage transmission dynamics in the zebrafish gut at single-virion resolution (Nature Microbiology)

    Ortiz de Ora and colleagues created Phollow, a live-imaging approach that tracks phage replication and spread in situ at single-virion resolution by marking virions with distinct fluorescent proteins as they assemble in newly infected cells. Used in optically transparent zebrafish to visualize phage outbreaks in the vertebrate gut, it showed that virions from a zebrafish-derived Plesiomonas strain, but not a human-derived E. coli, rapidly disseminate to the liver and brain, and that antibiotics triggered waves of interbacterial transmission and sudden shifts in gut community ecology.

  100. Dear Phage Protein enthusiast,

    We are pleased to invite you to The Phage Protein Meeting, September 10-11, 2025 in Ghent, Belgium.

    The Phage Protein Meeting is an interdisciplinary conference organized by academics and dedicated to advancing the field of phage proteins for biocontrol. This event will bring together academic researchers and professionals who are actively working with phage proteins such as phage lysins, tail fibers, tailspikes, depolymerases, and tailocins.

    Sincerely, Daniel Nelson on behalf of the Organizing Committee

  101. Jumbo phages use a membrane-bound EPI vesicle and then the phage nucleus to compartmentalize their genomes (Cell Host & Microbe)

    Bacteriophages of the Chimalliviridae family are shown to use two successive compartments during infection: a membrane-bound early phage infection (EPI) vesicle that encloses the injected genome and expresses early genes, and the protein-lattice phage nucleus to which the DNA is transferred before genome replication begins. The authors describe the EPI vesicle as a transcriptionally active, membrane-bound organelle formed by a prokaryotic virus.

  102. Dear Phage Protein enthusiast,

    We are pleased to invite you to The Phage Protein Meeting, September 10-11, 2025 in Ghent, Belgium.

    The Phage Protein Meeting is an interdisciplinary conference organized by academics and dedicated to advancing the field of phage proteins for biocontrol. This event will bring together academic researchers and professionals who are actively working with phage proteins such as phage lysins, tail fibers, tailspikes, depolymerases, and tailocins.

    Sincerely, Daniel Nelson on behalf of the Organizing Committee

  103. Scalable purification of bacteriophage preparations with alkaline phosphatase and anion-exchange chromatography (Journal of Chromatography A)

    Saavedra, Silva-Santos, Duarte and Azevedo describe in Journal of Chromatography A a purification workflow for bacteriophage preparations built around anion-exchange chromatography, using phage T4 and E. coli K12 as models. Treating with alkaline phosphatase before chromatography reduces the net negative charge of endotoxins so they separate from phages; the best workflow gave 98.8% endotoxin removal (20 U/mL enzyme then a quaternary-amine column), titres up to 1.26 × 10^11 PFU/mL and recoveries up to 45.1%, and some preparations would suit intravenous use as far as endotoxin content goes.

  104. Yves Briers (Ghent University, Belgium) and colleagues are hosting The Phage Protein Meeting September 10-11, 2025.

    The event is for researchers working with phage proteins such as phage lysins, tail fibers, tailspikes, depolymerases, and tailocins, who want to develop these proteins for controlling bacterial infections, from diagnostic to therapeutic applications across human and veterinary health, food conservation, and other applications for biocontrol.

  105. The Belgian Society for Viruses of Microbes (BSVoM) is hosting their 4th Annual Symposium on Phage Research, taking place on September 12, 2025 (the day after the Phage Protein Meeting, in the same city!).

    Particularly, there will be also a session on clinical phage therapy under the Belgian magistral phage legislation. Ghent has a beautiful historic city centre for sightseeing and touristic hotspots like Bruges, Antwerp and Brussels are located within a 30 min train trip. As such all phage lovers can have a phantastic trip to Belgium full of phage updates and sightseeing!

  106. Curcumin and a novel phage act synergistically against multidrug-resistant Acinetobacter baumannii (Scientific Reports)

    In vitro, curcumin (400 ug/mL) combined with the newly isolated phage vB_AbaSI_1 reduced multidrug-resistant A. baumannii to undetectable levels within 1 hour, and a double dose extended this to 5 hours, whereas phage alone rebounded within 3 hours. Synergy occurred only with phage-susceptible strains; the authors say future work will engineer the phage to make it therapeutically acceptable.

  107. I'm a chronic prostatitis patient who has tried Georgian & Russian phages before. While they did help, there was no lasting effect. I studied microbiology and so have faith in phages. I'd be looking for a place that could treat me, including by intra-prostatic injections/other delivery methods.

    Main culprits: E. faecalis and K. pneumoniae, both pretty resistant but still susceptible to some antibiotics - all but gentamicin have been tried, including rare or last resort antibiotics and combinations, such as linezolid or thiamphenicol, etc.

    https://chronicprostatitis.blogspot.com/p/feedback.html

  108. I'm a chronic prostatitis patient who has tried Georgian & Russian phages before. While they did help, there was no lasting effect. I studied microbiology and so have faith in phages. I'd be looking for a place that could treat me, including by intra-prostatic injections/other delivery methods.

    Main culprits: E. faecalis and K. pneumoniae, both pretty resistant but still susceptible to some antibiotics - all but gentamicin have been tried, including rare or last resort antibiotics and combinations, such as linezolid or thiamphenicol, etc.

    https://chronicprostatitis.blogspot.com/p/feedback.html

  109. I'm a chronic prostatitis patient who has tried Georgian & Russian phages before. While they did help, there was no lasting effect. I studied microbiology and so have faith in phages. I'd be looking for a place that could treat me, including by intra-prostatic injections/other delivery methods.

    Main culprits: E. faecalis and K. pneumoniae, both pretty resistant but still susceptible to some antibiotics - all but gentamicin have been tried, including rare or last resort antibiotics and combinations, such as linezolid or thiamphenicol, etc.

    https://chronicprostatitis.blogspot.com/p/feedback.html

  110. I'm a chronic prostatitis patient who has tried Georgian & Russian phages before. While they did help, there was no lasting effect. I studied microbiology and so have faith in phages. I'd be looking for a place that could treat me, including by intra-prostatic injections/other delivery methods.

    Main culprits: E. faecalis and K. pneumoniae, both pretty resistant but still susceptible to some antibiotics - all but gentamicin have been tried, including rare or last resort antibiotics and combinations, such as linezolid or thiamphenicol, etc.

    https://chronicprostatitis.blogspot.com/p/feedback.html

  111. Evergreen 2025 is happening, and for the first time in its 50-year history, we're taking it on the road!

    Register now for the 26th Biennial Evergreen International Phage Meeting, which will be held August 3-8, 2025, at the University of Tennessee, Knoxville!

    Hosted by the Phagebiotics Research Foundation, the Denes Lab, and UTK colleagues, this event aims to bring the magic of Evergreen to a new location.

    Follow @Evergreen_Phage on X for updates, or stay tuned here — Jan and Jess are excited to help out again this year!

  112. Phage cocktail or personalized therapy — an age-old binary, or a spectrum after all? Minyoung Kevin Kim (Stanford University) and colleagues from Mayo Clinic, QAMH, & KU Leuven published a review on how phage therapy is currently being implemented. They explore the rise of 'phage therapy centers' and the spectrum of treatment approaches being taken, extracting what's common to most & highlighting decision points at each step. Paper | Jessica's X thread about the paper

  113. Garyk Brixi (Arc Institute and Stanford University) and colleagues have expanded on Evo 1, which was trained on prokaryotic and phage genomes, to create Evo 2, now the largest AI model in biology. It was trained on 9.3 trillion nucleotides from 128,000 genomes across all domains of life (spanning bacteria, archaea, phages, humans, plants, and other single-celled and multi-cellular species). It identifies genetic patterns, predicts mutation effects, and designs genome-scale sequences. Evo 2 is fully open-source — play with it here!

  114. Benjamin Adler (University of California, Berkeley) and colleagues published CRISPRi-ART for phage functional genomics, a new broad-spectrum phage functional genomics platform. It leverages RNA-targeting dCas13d to selectively interfere with protein translation, allowing measurement of phage gene fitness at a transcriptome-wide scale. It works for all kinds of phages, and has already identified more than 90 previously unknown genes important for phage fitness!

  115. Coating phage-infected bacteria with polymer preserves phage vitality and improves oral phage therapy in mice (Nature Biomedical Engineering)

    Wrapping individual phage-infected bacteria in a polymeric nanoscale coating preserves the vitality of the phages released on lysis, which otherwise have severely degraded tail proteins. In mice with bacterially induced enteritis and associated arthritis, phages released from orally administered coated bacteria had higher bioavailability and led to substantially better outcomes than uncoated phages.

  116. Poland survey: awareness of phage therapy is low, but 84% would use it

    A questionnaire study of 1,098 people in Poland, from the Hirszfeld Institute of Immunology and Experimental Therapy and colleagues, found antibiotic-resistance awareness above 90% but awareness of phage therapy between 8.9% and 39.7% depending on group. Readiness to use phage treatment was 84.4%, even if it must be paid for, while just over one third of physicians (37.5%) were ready to deepen their knowledge.

  117. Seeking Themus thermophilus HB27 bacteriophages.

    Dear colleagues, I would greatly appreciate sharing T. thermophilus bacteriophages for my research of thermophilic bacteria anti-phage defence or any advice where I can find them.

    Please contact me by email prostova@caltech.edu Thank you in advance!

    Best regards, Maria Prostova

  118. The International Antiviral Society-USA (IAS-USA) is hosting a conference called Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, taking place October 12-14 2025 in Washington, DC.

    This inaugural 2.5-day event aims to bring together 500 US and international researchers to discuss recent advances in phage biology and potential clinical applications.

    Featured speakers include Martha Clokie and Philip Kranzusch; conference chairs are Graham Hatfull and Robert (Chip) Schooley, with an extremely exciting roster of key phage scientists and clinicians making up the scientific program committee!

  119. 2026 meeting alert! (Yes, 2026 — these get planned early!)

    The Beyond Antibiotics: Emerging Strategies for Combating Bacterial Infection Keystone Symposium will take place on May 4–7, 2026 in Breckenridge, Colorado.

    The event aims to explore innovative approaches to fight bacterial infections beyond traditional antibiotics. The scientific organizers are Joseph P. Zackular, Kimberly Kline, Daria Van Tyne and Mariana X. Byndloss.

  120. Seeking Themus thermophilus HB27 bacteriophages.

    Dear colleagues, I would greatly appreciate sharing T. thermophilus bacteriophages for my research of thermophilic bacteria anti-phage defence or any advice where I can find them.

    Please contact me by email prostova@caltech.edu Thank you in advance!

    Best regards, Maria Prostova

  121. Stanford undergraduate student Aaryan Harshith published a new blog post on his adventures in the Bollyky lab this past year, which led to his independent quest to discover three novel phages in his first year at the bench!

    This is a fantastic read describing some of the trials and tribulations (and joys!) of lab work, that many of us can probably relate to.

    (Also Aaryan is awesome; one of Jess’ favourite students — you might consider subscribing to his blog to follow all the other cool things he’s doing, like building phage TEM image databases, and more!)

  122. The International Antiviral Society-USA (IAS-USA) is hosting a conference called Conference on Bacteriophages: Biology, Dynamics, and Therapeutics, taking place October 12-14 2025 in Washington, DC.

    This inaugural 2.5-day event aims to bring together 500 US and international researchers to discuss recent advances in phage biology and potential clinical applications.

    Featured speakers include Martha Clokie and Philip Kranzusch; conference chairs are Graham Hatfull and Robert (Chip) Schooley, with an extremely exciting roster of key phage scientists and clinicians making up the scientific program committee!

  123. 2026 meeting alert! (Yes, 2026 — these get planned early!)

    The Beyond Antibiotics: Emerging Strategies for Combating Bacterial Infection Keystone Symposium will take place on May 4–7, 2026 in Breckenridge, Colorado.

    The event aims to explore innovative approaches to fight bacterial infections beyond traditional antibiotics. The scientific organizers are Joseph P. Zackular, Kimberly Kline, Daria Van Tyne and Mariana X. Byndloss.

  124. The Canadian Society of Microbiologists (CSM) is hosting its 74th Annual Conference.

    CSM will take place June 17-20, 2025 at Université de Montréal, the largest francophone university of Canada. The theme for this year’s meeting is “Microbiology for society”; to emphasize how Microbiology has and continue to shape the humanity since millenaries in the different field of life.

  125. The 1st International Symposium on Advances in Phage Therapeutics will take place on June 16-17, 2025, in Braga, Portugal.

    Organized by experts behind the Viruses of Microbes 2022 Conference, this symposium will focus on the latest developments in phage therapy, covering topics such as personalized treatments, pharmacokinetics, and applications for chronic infections. Researchers, healthcare professionals, and industry experts are invited to join discussions on the future of phage-based therapeutics.

  126. DepoRanker: a machine-learning web tool to rank phage depolymerases against Klebsiella

    George Wright, Slawomir Michniewski, Eleanor Jameson and Fayyaz ul Amir Afsar Minhas describe DepoRanker, a machine-learning algorithm that ranks proteins by their likelihood of being phage depolymerases targeting Klebsiella capsular polysaccharides. The arXiv preprint (27 January 2025) reports that it outperformed BLAST and was experimentally validated on five newly characterised proteins; it is available as a web server and open-source software.

  127. Indigo carmine, a food additive, inactivates DNA phages and protects bacterial cultures (Applied Microbiology and Biotechnology)

    Indigo carmine, an FDA-approved food additive, selectively inactivated DNA phages (P001, T4, T1, T7, lambda) but not the RNA phage MS2, by binding double-stranded DNA and causing genome ejection from the capsid; under optimal conditions (50 C, 220 rpm) it gave up to a 7-log reduction in phage titer. It also protected E. coli cultures from phage-induced lysis, which the authors propose as an antiphage agent for industrial bioprocesses.

  128. Streptomyces siderophore coelichelin sensitizes Bacillus subtilis to phage infection (Nature Microbiology)

    A binary-interaction screen identified coelichelin, a siderophore secreted by Streptomyces sp., as a metabolite that sensitizes its soil competitor Bacillus subtilis to lytic phages (SPO1, SP10, SP50, Goe2) by sequestering iron and preventing activation of the regulator Spo0A. Metabolomics suggests other bacterial natural products may give their producers a similar phage-mediated competitive advantage.

  129. Phages for Global Health is featured in "The Good Virus," an upcoming documentary that highlights how PGH workshops have catalyzed phage research across Africa, where scientists are now successfully treating AMR infections and building local capacity for phage research.

    Through inspiring stories from Uganda to Kenya, the film shows how international collaboration is transforming the fight against bacterial infections!

    Watch the trailer!

  130. Phages for Global Health is featured in "The Good Virus," an upcoming documentary that highlights how PGH workshops have catalyzed phage research across Africa, where scientists are now successfully treating AMR infections and building local capacity for phage research.

    Through inspiring stories from Uganda to Kenya, the film shows how international collaboration is transforming the fight against bacterial infections!

    Watch the trailer!

  131. The International Society for Viruses of Microbes has elected its new board! (Of 1401 members, 32% voted!)   • President-Elect: Rob Edwards, Flinders University, Australia • Vice-President: Hany Anany, Agriculture and AgriFood Canada, Canada • Membership Officer: Cedric Lood, University of Oxford, Great Britain • Treasurer: Tracy Peters, University of Idaho, USA • Information Officer: Luis Melo, University of Minho, Portugal • Website administrator: Hugo Olivera, University of Minho, Portugal • Assistant Secretary: Katja Suster, Valdoltra Orthopaedic Hospital, Slovenia • Industry Outreach: Sandra Morales, Phage Consulting Pty Ltd., Australia   Congratulations to all the elected members! The new Executive Board will start working for ISVM from January 1st, 2025, including Lone Brøndsted as President and Zuzanna Drulis-Kawa as member-at-large.

  132. New North American phage biology and therapy conference alert!

    Save the date: Sunday, October 12 to Tuesday, October 14, 2025 at the Washington Hilton Hotel, in Washington, DC. 

    Organizers: Graham Hatfull, Chip Schooley, Paul Bollyky and colleagues.

    More info coming soon!

  133. New North American phage biology and therapy conference alert!

    Save the date: Sunday, October 12 to Tuesday, October 14, 2025 at the Washington Hilton Hotel, in Washington, DC. 

    Organizers: Graham Hatfull, Chip Schooley, Paul Bollyky and colleagues.

    More info coming soon!

  134. The International Society for Viruses of Microbes has elected its new board! (Of 1401 members, 32% voted!)   • President-Elect: Rob Edwards, Flinders University, Australia • Vice-President: Hany Anany, Agriculture and AgriFood Canada, Canada • Membership Officer: Cedric Lood, University of Oxford, Great Britain • Treasurer: Tracy Peters, University of Idaho, USA • Information Officer: Luis Melo, University of Minho, Portugal • Website administrator: Hugo Olivera, University of Minho, Portugal • Assistant Secretary: Katja Suster, Valdoltra Orthopaedic Hospital, Slovenia • Industry Outreach: Sandra Morales, Phage Consulting Pty Ltd., Australia   Congratulations to all the elected members! The new Executive Board will start working for ISVM from January 1st, 2025, including Lone Brøndsted as President and Zuzanna Drulis-Kawa as member-at-large.

  135. Eric Nguyen (Stanford University, Arc Institute) and colleagues published a paper on their new machine learning model, Evo, a new generative AI model trained on millions of phage and bacterial genomes for designing new biological sequences from scratch. They show that Evo can design new functional CRISPRs and transposons, and generate plausible-looking phage genomes based on large phage gene essentiality datasets! Next up — generating phages that actually infect.

  136. Phages for Global Health's president, Dr Tobi Nagel, is working in Malaysia for 2 months as part of her Fulbright project on phage therapy regulation systems.

    Excitingly, the Malaysia Phage Network (MPN) has just launched! The first meeting of MPN took place this week, organized in partnership with Tobi’s Fulbright hosts in Malaysia, Drs Heera Rajandas and Siva Parimannan from the Asian Institute of Medicine, Science and Technology.

    Read more about the first segment of Tobi’s Fulbright project, when she spent 2 months working in Kenya.

    For the final segment of that project, she will work in Uganda during March - April 2025, hosted by Dr. Jesca Nakavuma at Makerere University.

  137. Phage-infected Synechococcus release metabolites that attract marine bacteria before lysis (Nature Microbiology)

    Metabolites released from intact, phage-infected Synechococcus strongly attracted the marine bacteria Vibrio alginolyticus and Pseudoalteromonas haloplanktis, especially in early infection, while uninfected cyanobacteria did not. 5'-deoxyadenosine and 5'-methylthioadenosine were identified as key attractants, suggesting a pre-lysis route for resource transfer that might affect carbon and nutrient fluxes.

  138. New social network alert! A bunch of phage people are now on Bluesky!

    Atif Khan, Jyot Antani, James Gurney, and Richard Allen White III have curated and shared phage-related ‘Starter Packs’ to help newcomers find the phage community on the platform:

    Once you’ve created your account, click to follow everyone on each of these starter packs, and message the creators to request being added to the lists!

  139. Jyot Antani (Yale University) and colleagues developed a microscopy-based technique to measure phage attachment to bacterial cells. This method provides an attractive alternative to the (literally) century-old Phage Adsorption Assay because it...

    • is fast
    • consumes less media
    • provides single-virus readouts
    • does not rely on a theoretical model to estimate adsorption rate

    Feel free to reach out with any questions: jyot.antani@yale.edu. Requests for advice or collaborations are welcome!

  140. Atif Khan (phage scientist at the Bhabha Atomic Research Center in Chennai, India and longtime Phage Directory volunteer) was interviewed on the "You Make Me Sick!" podcast about his work. They talk phages, biofilms, biofouling, multidrug-resistant organisms, and phage therapy applications.

  141. The Phage Collection Project, led by early career researchers at the University of Southampton, is pioneering a citizen science initiative to tackle AMR.

    The project combines public education, clinical biobanking, and policy advocacy to advance development and implementation of phage therapeutics in the UK healthcare system.

    They’ve just launched a new blog — check it out!

  142. Genome-based prediction of strain-level phage-host interactions across Escherichia, with a phage cocktail pipeline (Nature Microbiology)

    Using a dataset of interactions between 403 Escherichia strains and 96 phages, researchers predicted strain-level phage-bacteria outcomes from genomic data alone (AUROC 86%) and found that adsorption factors explain most interactions while antiphage systems play a marginal role. They also built a pipeline that recommends tailored phage cocktails, demonstrated on 100 pathogenic E. coli isolates.

  143. New phage book alert! Lina Zeldovich announced that her new book, "The Living Medicine," is out today, described by reviewers as “unputdownable” and compared to "The Immortal Life of Henrietta Lacks," making it a must-read for those interested in the intersection of medicine and storytelling (and phages!).

  144. Did you know the CDC and FDA have an Antimicrobial Resistance (AR) Isolate Bank? Researchers can order microbial isolates for free, collected from CDC's surveillance and outbreak activities. These isolates are combined into panels for testing. Since its 2015 launch, the AR Isolate Bank has distributed over 10,000 panels to more than 2,000 institutions.

    (Thanks to Cathy Nguyen, CDC researcher and former Phage Directory volunteer, for this tip!)

  145. Plasma-activated water pre-treatment enhances phage activity against Proteus mirabilis biofilms (Biofilm)

    Researchers at Queen's University Belfast and University College Dublin found that combining cold plasma-activated water with phage vB_PmiS_PM-CJR reduced biofilm-embedded Proteus mirabilis cells by about 4 log, as a possible option for catheter-associated urinary tract infections. Exposing the biofilm to plasma-activated water before the phage worked better than the reverse order.

  146. Phage communities in toothbrush and showerhead biofilms correlate with their bacterial hosts (Frontiers in Microbiomes)

    Querying 34 toothbrush and 92 showerhead metagenomes, researchers identified 22 complete, 232 high-quality and 362 medium-quality viral OTUs, with viral richness correlating with bacterial richness. Low sequence similarity to references and many unannotated genes indicate many novel, uncharacterized phages in these household biofilms.

  147. This Week in Virology (TWiV) recorded a special live podcast episode at the 2024 Viruses of Microbes meeting in Cairns, Australia. Hosts Vincent Racaniello and Jolene Ramsey interviewed phage researchers Krystyna Dabrowska and Rob Lavigne about phage therapy, immunological challenges, personalized approaches, and new developments in phage-derived products.

    Key timestamps: 23:50 - Immune responses to phages 28:52 - First 100 cases of phage therapy in Belgium 35:23 - Magistral preparation for phage therapy 41:47 - Endolysins and DNA dark matter 50:51 - Phage-derived tools for non-model organisms

    Watch the full podcast on YouTube!

  148. This Week in Virology (TWiV) recorded a special live podcast episode at the 2024 Viruses of Microbes meeting in Cairns, Australia. Hosts Vincent Racaniello and Jolene Ramsey interviewed phage researchers Krystyna Dabrowska and Rob Lavigne about phage therapy, immunological challenges, personalized approaches, and new developments in phage-derived products.

    Key timestamps: 23:50 - Immune responses to phages 28:52 - First 100 cases of phage therapy in Belgium 35:23 - Magistral preparation for phage therapy 41:47 - Endolysins and DNA dark matter 50:51 - Phage-derived tools for non-model organisms

    Watch the full podcast on YouTube!

  149. A 75-year-old female patient with recurrent Pseudomonas septicaemia and arterial stents was treated using a phage–meropenem combination therapy at Tampere University Hospital, Finland. A 3-phage P. aeruginosa cocktail was given IV together with meropenem for 2 weeks. 10-month follow-up showed no adverse reactions, infection markers normalized, recovery was seen in a PET-CT scan, and no further P. aeruginosa septicaemias occurred.

  150. In a recent interview, Dr. Evelien Adriaenssens (Quadram Institute) discusses her career journey to becoming a Group Leader, focusing on the role of phages in the gut microbiome to promote health and combat disease. She reflects on the diverse responsibilities of managing a research group, including mentoring, formulating new research ideas, and fostering collaborations. She also shares insights on her ongoing phage therapy research, specifically targeting Pseudomonas aeruginosa in patients with chronic lung infections.

  151. 🎙️ New Podovirus Podcast Episode Alert!

    I had such a great time talking to Jesus Fernandez-Rodriguez, PhD, VP of Technology at Eligo Bioscience, about how they're editing live microbes in the mouse gut with engineered phages!

    🧬 Highlights & questions:

    • 93% editing efficiency in gut E. coli with a single dose of a phage-derived base editor! (And it lasts for at least 6 weeks...!)
    • Where are we at with microbiome therapeutics?
    • How do you make phages deliver genes to live microbes?
    • Is this tool just as cool as a perturbing device (to ASK questions about what happens when you turn off a bacterial gene in the gut) as it is a therapeutic?

    Check out the full episode here: 🎧Spotify 📺 Youtube

    📄 Here's the team's new Nature paper

    🤔One thing I really wanted to know, but must remain a secret for a bit longer — what should we be targeting first with something like this?

    Would love to hear your thoughts!

  152. The Phage Hunters Training and Research Program (PHTRP) has launched a fundraiser to support their Phage Training Startup Fund.

    This initiative aims to equip young scientists in Africa and other developing countries with the skills needed to combat AMR through phage research. Inspired by the SEA-PHAGES program, PHTRP focuses on in-silico phage hunting and bioinformatics training, empowering the next generation of researchers to address the global AMR crisis.

    The funds raised will cover startup registration costs, legal fees, and operational expenses.

  153. Only a few more days to vote for the International Society for Viruses of Microbes Executive Board candidates! (Ends Oct 21)

    ISVM members are invited to participate in the upcoming elections for the ISVM Executive Board to shape the future of the organization and its initiatives in viruses of microbes research.

    How to vote? Check your email (and if you didn't get one, check your spam folder!) Each member should have gotten an individual email with a voting link.

  154. Only a few more days to vote for the International Society for Viruses of Microbes Executive Board candidates! (Ends Oct 21)

    ISVM members are invited to participate in the upcoming elections for the ISVM Executive Board to shape the future of the organization and its initiatives in viruses of microbes research.

    How to vote? Check your email (and if you didn't get one, check your spam folder!) Each member should have gotten an individual email with a voting link.

  155. Phage and vancomycin co-delivery hydrogel reduces MRSA load in a fracture-related infection model (npj Biofilms and Microbiomes)

    A hydrogel loaded with a phage cocktail and vancomycin gave a 99.72% reduction in MRSA biofilm in vitro and maintained activity for eight days. In vivo, the co-delivery hydrogel with systemic antibiotic reduced bacterial load by 0.99 log10 CFU versus controls, with active phages detected in tissues and no phage resistance in the phage treatment groups.

  156. In episode 2 of the Podovirus podcast, 'Getting Phage Research Funded', Jessica Sacher interviews Dr. Joe Campbell, who spent the past decade+ as a program officer at NIAID, the US gov's main infectious disease funding body.

    Dr. Campbell reflects on his role in making it easier for phage research to get NIH funding, and shares his perspective on what's next for the field, including the growing importance of phage therapy centers like Phage Australia and Phage Canada.

    Subscribe to Podovirus to get the next one, which will be an interview with Dr. Jesus Fernandez of Eligo Bioscience about their recent paper on microbiome editing with engineered lambda phage!

  157. In episode 2 of the Podovirus podcast, 'Getting Phage Research Funded', Jessica Sacher interviews Dr. Joe Campbell, who spent the past decade+ as a program officer at NIAID, the US gov's main infectious disease funding body.

    Dr. Campbell reflects on his role in making it easier for phage research to get NIH funding, and shares his perspective on what's next for the field, including the growing importance of phage therapy centers like Phage Australia and Phage Canada.

    Subscribe to Podovirus to get the next one, which will be an interview with Dr. Jesus Fernandez of Eligo Bioscience about their recent paper on microbiome editing with engineered lambda phage!

  158. taxmyPHAGE automates dsDNA phage genome taxonomy

    “We created a MASH database for rapid searching of closely related phages, to then be compared with BLASTn to compute intergenomic similarity between bacteriophages.” The authors report that taxmyPHAGE is available as a conda repository and website for rapid classification of phage genomes into existing genera and species.

  159. Hypersaline environments harbor the highest concentrations of virus-like particles reported for aquatic ecosystems. Rodrigo Sanchez-Martinez (University of Alicante, Spain) and colleagues investigated episomal phage maintenance in the salt-tolerant bacteria Salinibacter ruber. They saw that episomal maintenance of the phage and lysis inhibition allow for host-virus co-existence under high MOI infections specifically.

  160. The Women In Phage initiative is conducting a survey to understand the experiences of women in science and research, particularly in bacteriophage research. Your insights will help identify challenges and strategies for future generations. Participate here.

  161. The 14th annual Oxford Phage Conference will be held September 2-3, 2024 in Oxford, UK as a hybrid event.

    Confirmed speakers include Professor Martha Clokie (UK) | Professor Aidan Coffey (Ireland) | Dr Mariam Dadiani (Georgia) | Professor Heather Allison (UK) | Professor David Gally (UK) | Dr Janine Bowring (Denmark) | Dr Antonia Sagona (UK) | Dr Sabrina Green (Belgium) | Dr Christian Fitch (UK) | Professor Paul Bollyky (USA).

    See also the conference organizer’s youtube channel for past talks.

  162. ICTV's Computational Virus Taxonomy Challenge is now open, inviting bioinformaticians to classify a set of viral sequences using a bioinformatics pipeline of their choice or design.

    Pipelines should be fully and easily reproducible and code and environment to run it should be made available, and will be evaluated using the Taxonomy Release MSL39 as well as reproducibility, speed, accuracy at different ranks, for different types of viruses, etc.

    Contact Cédric Lood and Bas Dutilh with questions or suggestions!

  163. ICTV's Computational Virus Taxonomy Challenge is now open, inviting bioinformaticians to classify a set of viral sequences using a bioinformatics pipeline of their choice or design.

    Pipelines should be fully and easily reproducible and code and environment to run it should be made available, and will be evaluated using the Taxonomy Release MSL39 as well as reproducibility, speed, accuracy at different ranks, for different types of viruses, etc.

    Contact Cédric Lood and Bas Dutilh with questions or suggestions!

  164. Bacterial defence system conjugates ubiquitin-like proteins to phage tail fibres, impairing infectivity (Nature)

    A bacterial antiphage system made of a ubiquitin-like protein, E1 and E2 conjugating enzymes and a deubiquitinase attaches the ubiquitin-like protein to the phage central tail fibre during infection. Infected cells release tailless particles and phages with obstructed tail fibres that have severely impaired infectivity, and the authors conclude that ubiquitin-like conjugation is an antiviral strategy conserved across the tree of life.

  165. Hannelore Longin (KU Leuven, Belgium) and colleagues have reviewed the emerging role of posttranslational modifications during phage-bacteria interactions, highlighting their potential impact on protein behavior and suggesting a comprehensive, multipronged pipeline (based on bioinformatics, mass spec, multi-omics, structural biology and mutational studies) to help drive this field forward.

  166. Shelf-stable phage tablets with a bioluminescent reporter enable high-throughput phage screening (Nature Communications)

    A portable library of solid tablets, each encapsulating one phage with luciferin and luciferase stabilized in a pullulan-trehalose sugar matrix, detects phage-mediated ATP release as light when bacterial cells burst. The platform identified target phages for multidrug-resistant clinical isolates of Pseudomonas aeruginosa, Salmonella enterica, Escherichia coli and Staphylococcus aureus within 30-120 minutes.

  167. Anti-CRISPR regulator Aca2 binds both DNA and RNA to control phage anti-CRISPR production (Nature)

    The helix-turn-helix regulator Aca2 represses phage anti-CRISPR synthesis transcriptionally by binding DNA and also inhibits translation of the mRNAs by binding conserved RNA stem-loops and blocking ribosome access; a cryo-EM structure of the Aca2-RNA complex shows how it discriminates RNA from DNA sites. The authors say these combined modes let phages inhibit CRISPR-Cas despite rapid DNA replication without toxic anti-CRISPR overexpression.

  168. Tobi Nagel and Francesca Hodges have organized a hybrid meeting to discuss therapeutic phage bank recommendations.

    The meeting is scheduled for July 15th in Cairns, Australia from 1-2:30 PM Australian Eastern Standard Time (GMT+10) (5-10 min walk from VoM convention center in Cairns, which will begin at 3pm that day).

    The goal is to address differing opinions within the phage community on key topics identified through their global survey.

    Please register your interest above if you’ll be coming!

  169. The Phage Bioinformatics Wish List Survey is live!

    (Thanks to the 31 respondents to date! The data is shaping up to be super informative!)

    This survey aims to better understand the needs and satisfaction levels of phage biologists regarding various functions and bioinformatics tools used for phage sequence analysis, particularly in support of phage therapy. Your insights are invaluable in guiding future developments in this field.

    This survey has been prepared by Bishoy M. Zaki and Ramy K. Aziz. It is not affiliated with any private or academic organization to which they belong.

  170. Attention phage researchers! You have until Monday June 24th to make your opinions (on phage banks) count!

    Tobi Nagel (Phages for Global Health) and Francesca Hodges (Innovate UK Business Connect) are working to capture the global phage community's recommendations for curating and managing phage banks around the world.

    Phage researchers are invited to agree/disagree with the compiled preliminary list of Recommendations for Phage Banks.

    This has been a MONUMENTAL effort by Tobi and Fran (and many phage community members!) over the past TWO years. They've hosted 'town hall' events at Viruses of Microbes Tbilisi, Evergreen International Phage Conference, and online via extensive working groups and surveys.

    Please take a few minutes (before Monday!) and add your views, so we can move forward as a community toward well-characterized phage collections that we can all use, share, and build from.

    P.S. The current status of the project will be presented at the Viruses of Microbes 2024 conference!

  171. In an upcoming course in Lyon, France (Nov 12-13 2024), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) will explore current clinical experiences, compassionate use protocols, cohort studies, and ongoing clinical trials in phage therapy, emphasizing global regulatory navigation and implementation.

    Course coordinator: Tristan Ferry.

    Register by Oct 27, and apply for an attendance grant by Sept 20.

  172. In an upcoming course in Lyon, France (Nov 12-13 2024), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) will explore current clinical experiences, compassionate use protocols, cohort studies, and ongoing clinical trials in phage therapy, emphasizing global regulatory navigation and implementation.

    Course coordinator: Tristan Ferry.

    Register by Oct 27, and apply for an attendance grant by Sept 20.

  173. In an upcoming course in Lyon, France (Nov 12-13 2024), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) will explore current clinical experiences, compassionate use protocols, cohort studies, and ongoing clinical trials in phage therapy, emphasizing global regulatory navigation and implementation.

    Course coordinator: Tristan Ferry.

    Register by Oct 27, and apply for an attendance grant by Sept 20.

  174. In an upcoming course in Lyon, France (Nov 12-13 2024), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) will explore current clinical experiences, compassionate use protocols, cohort studies, and ongoing clinical trials in phage therapy, emphasizing global regulatory navigation and implementation.

    Course coordinator: Tristan Ferry.

    Register by Oct 27, and apply for an attendance grant by Sept 20.

  175. Predicting stop codon reassignment improves phage genome annotation: Pharokka-gv and Prokka-gv (ISME Communications)

    The study predicted 76 INPHARED genomes and 712 Unified Human Gut Virome Catalogue vOTUs that repurpose a stop codon to encode an amino acid, and re-annotated them with modified Pharokka-gv and Prokka-gv tools. For sequences predicted to reassign TAG to glutamine, Pharokka-gv raised median gene length by 67.8% (UHGV) and 72.9% (INPHARED) and increased median coding capacity to about 90%.

  176. New phage conference alert — this time in South America!!

    Phage researchers at the Universidad de los Andes invite the international phage community to Phage Option Congress 2024 (Dec 4-6, 2024 in Cartagena, Colombia).

    This will be the 3rd Latin American Meeting on Bacteriophages, and will span phage biology and applications across human, animal and plant health.

    Speakers include Sandro Sulakvelidze (Intralytix), Mikeljon Nikolich (Walter Reed Army Institute of Research), Sofia Corte-Real (Technophage), Frenk Smrekar (Jafral), Krystyna Dabrowska (Polish Academy of Sciences), and more to be announced!

    Organizers include Alejandro Reyes, Mariana Piuri, Martha Vives, Santiago Hernandez, Viviana Clavijo, and Sandra Morales.

    Register here.

  177. Registration is now open for the 2024 International Soil Virus Conference!

    Soil virologists and enthusiasts will gather to explore the multifaceted roles of soil viruses within a One Health framework, with a special focus on meta-omics characterization of soil viruses and their connections with biogeochemistry, food web dynamics, and soil health.

    The meeting takes place June 25 to June 27 at the University of California Livermore Collaboration Center (virtual option available).

    Register by June 14!

  178. Lina Zeldovich, an author who grew up in a family of Soviet scientists, published a new book, ‘The Living Medicine: How a Lifesaving Cure Was Nearly Lost—and Why It Will Rescue Us When Antibiotics Fail’. She explores the history and potential of phages, tracing the journey of phage therapy from its discovery to its near extinction and current revival.

    Steffanie Strathdee read the book and tweeted “If you thought you knew everything about #phagetherapy, you were wrong!”.

  179. One hundred personalized phage treatments, combined! Not only did Jean-Paul Pirnay and colleagues at the Queen Astrid Military Hospital in Belgium provide phages for 100 cases, they also published a full analysis of the outcomes! This led Nature Microbiology to write an editorial advocating for phage therapy development (win!). See also this commentary on the paper from Jon Iredell and colleagues, and this blog post and Twitter thread by coauthor Sabrina Green, who breaks down the main learnings.

  180. Katie Wiebe (Cytophage Technologies, Inc) and colleagues have outlined a scalable and efficient production strategy for the ETEC phage ‘Phage75’, which accounts for infection load, MOI, temperature, media, harvest time, and host bacteria (they screened variables impacting production in a high throughput OD assay). They demonstrate this works in flasks at 3 scales as well as in the Cellexus CellMaker bioreactor.

  181. Outcomes of 100 consecutive personalized phage therapy cases from a Belgian consortium (Nature Microbiology)

    A retrospective observational analysis of the first 100 consecutive cases of personalized phage therapy facilitated by a Belgian consortium in 35 hospitals across 12 countries (2008-2022) reports clinical improvement in 77.2% and eradication of the targeted bacteria in 61.3% of infections. Eradication was 70% less probable without concomitant antibiotics; the authors note the data are uncontrolled and can inform the design of future controlled trials.

  182. Registration is now open for the 2024 International Soil Virus Conference!

    Soil virologists and enthusiasts will gather to explore the multifaceted roles of soil viruses within a One Health framework, with a special focus on meta-omics characterization of soil viruses and their connections with biogeochemistry, food web dynamics, and soil health.

    The meeting takes place June 25 to June 27 at the University of California Livermore Collaboration Center (virtual option available).

    Register by June 14!

  183. Registration is now open for the 2024 International Soil Virus Conference!

    Soil virologists and enthusiasts will gather to explore the multifaceted roles of soil viruses within a One Health framework, with a special focus on meta-omics characterization of soil viruses and their connections with biogeochemistry, food web dynamics, and soil health.

    The meeting takes place June 25 to June 27 at the University of California Livermore Collaboration Center (virtual option available).

    Register by June 14!

  184. M. J. N. Thomas (University of Manchester) and colleagues published a new paper in mSystems called ‘What makes a temperate phage an effective bacterial weapon?’. They combine mathematical models and experimental work to reveal how temperate phage traits like lysis probability and induction rate determine their effectiveness. They found that the optimal combination of traits varied with the initial frequency of lysogens within a population.

  185. The Phage Bioinformatics Wish List Survey is live!

    (Thanks to the 31 respondents to date! The data is shaping up to be super informative!)

    This survey aims to better understand the needs and satisfaction levels of phage biologists regarding various functions and bioinformatics tools used for phage sequence analysis, particularly in support of phage therapy. Your insights are invaluable in guiding future developments in this field.

    This survey has been prepared by Bishoy M. Zaki and Ramy K. Aziz. It is not affiliated with any private or academic organization to which they belong.

  186. Registration is now open for the 2024 International Soil Virus Conference!

    Soil virologists and enthusiasts will gather to explore the multifaceted roles of soil viruses within a One Health framework, with a special focus on meta-omics characterization of soil viruses and their connections with biogeochemistry, food web dynamics, and soil health.

    The meeting takes place June 25 to June 27 at the University of California Livermore Collaboration Center (virtual option available).

    Register by June 14!

  187. The Phage Bioinformatics Wish List Survey is live!

    (Thanks to the 31 respondents to date! The data is shaping up to be super informative!)

    This survey aims to better understand the needs and satisfaction levels of phage biologists regarding various functions and bioinformatics tools used for phage sequence analysis, particularly in support of phage therapy. Your insights are invaluable in guiding future developments in this field.

    This survey has been prepared by Bishoy M. Zaki and Ramy K. Aziz. It is not affiliated with any private or academic organization to which they belong.

  188. Personalized phage-antibiotic therapy of a multidrug-resistant P. aeruginosa implant-associated infection in a Siamese cat (The Veterinary Quarterly)

    Braunstein and colleagues report in The Veterinary Quarterly the personalized phage-antibiotic treatment of a cat with a multidrug-resistant Pseudomonas aeruginosa implant-associated infection after arthrodesis surgery: a tailored anti-P. aeruginosa phage applied topically to the surgical wound plus intramuscular ceftazidime. After two treatment courses of 7 and 3 weeks the wound, which had been open for five months, fully closed; the authors say this is the first case of personalized phage therapy in felines.

  189. Registration is now open for the 2024 International Soil Virus Conference!

    Soil virologists and enthusiasts will gather to explore the multifaceted roles of soil viruses within a One Health framework, with a special focus on meta-omics characterization of soil viruses and their connections with biogeochemistry, food web dynamics, and soil health.

    The meeting takes place June 25 to June 27 at the University of California Livermore Collaboration Center (virtual option available).

    Register by June 14!

  190. Pelagiphage-infected SAR11 cells without ribosomes ("zombie" cells) found across global oceans (Nature Communications)

    Fluorescence in situ hybridization showed that up to 19% of SAR11 (Pelagibacterales) cells were phage-infected during a phytoplankton bloom, coinciding with a roughly 90% drop in SAR11 abundance within 5 days. A fraction of infected cells had no detectable ribosomes, which the authors dubbed zombie cells, and infected and zombie cells were detected in the Atlantic, Pacific and Southern Oceans.

  191. Registration is now open for the 2024 International Soil Virus Conference!

    Soil virologists and enthusiasts will gather to explore the multifaceted roles of soil viruses within a One Health framework, with a special focus on meta-omics characterization of soil viruses and their connections with biogeochemistry, food web dynamics, and soil health.

    The meeting takes place June 25 to June 27 at the University of California Livermore Collaboration Center (virtual option available).

    Register by June 14!

  192. An anonymous donation to the University of Toronto has led to a grant call of up to 1.5 million Canadian dollars for phage therapy research, with letters of interest due on April 19th. There are options for $200,000 and $50,000 allocations. Primary applicants are required to have an academic appointment in Canada, and international collaborations are encouraged.

  193. Saccharibacteria TM7x protects its host bacterium from phage and promotes phage-bacteria coexistence (PNAS)

    A human oral Saccharibacteria isolate (TM7x) protected its host Schaalia odontolytica XH001 from lytic phage LC001 during surface-associated growth, with down-regulation of a cell-wall polysaccharide gene cluster that affects phage binding. Coevolution experiments showed that mixed TM7x-associated and TM7x-free populations promote bacteria-phage coexistence.

  194. Want a quick visual on global prevalence of Pseudomonas resistance to fluroquinolones? Or E. coli resistance to colistins? ResistanceMap is a new interactive visualization tool for looking at AMR around the world, created by One Health Trust.

  195. Paul Turner (Yale University) and colleagues have written a new review on gaps in modern phage therapy R&D. It includes some fun exploration of how AI & synbio could ease phage therapy logistics, a walkthrough of how and why new funding & regulatory models would help, an overview of how local phage centers and small biotechs are pushing phage therapy forward in the absence of large pharma, and more. Great read!

  196. The International Society of Viruses of Microorganisms (ISVM) is calling for applications to organize the Viruses of Microbes (VoM) 2026 conference.

    Interested ISVM members should submit their applications by April 30, 2024, to board@isvm.org.

    The selection process includes a review and presentation at VoM 2024 in Cairns, Australia. Organizing VoM is rewarding but demands strong teamwork and planning.

  197. The International Society of Viruses of Microorganisms (ISVM) is calling for applications to organize the Viruses of Microbes (VoM) 2026 conference.

    Interested ISVM members should submit their applications by April 30, 2024, to board@isvm.org.

    The selection process includes a review and presentation at VoM 2024 in Cairns, Australia. Organizing VoM is rewarding but demands strong teamwork and planning.

  198. The 2nd Symposium of the Belgian Society for Viruses of Microbes (BSVoM) was held on September 8, 2023, at the University of Liège, featuring over 140 researchers from 10 countries discussing phage ecology, diversity, and applications.

    The event also launched the "Phage Valley" initiative, promoting Belgium's collaborative phage research ecosystem.

    Summary of the symposium

  199. In an article featured in BioSpectrum India, Atif Khan, a scientist at the Biofouling and Biofilm Processes Section of the Bhabha Atomic Research Centre, India discusses the likely establishment of phage infrastructure in India within the next five years. He describes how CIBA in Chennai has developed phages for controlling Vibrio in prawn farming, how the University of Madras is working on phages for agricultural applications, and how the polish biotech Proteon Pharmaceuticals is settling up its plant in India.

  200. Dear researchers and Professors: This is a small bio-technology company in China. We urgently need to buy or share some Streptococcus mutant phage M102, M102AD, e10, f1, SMHBZ8, APCM01, phiKSM96, to continue our research, If you got some or have some information, please email us,many thanks. David (dw.zhang@phagein.com)

  201. Madison Stellfox and colleagues at the University of Pittsburgh published a new paper on phage-antibiotic combination therapy for recurrent E. faecium. Phages were administered to a patient with increasingly severe E. faecium bloodstream infections over 7 years. Her health initially improved after phage treatment, but after a relapse she unfortunately passed away.

    STAT News also wrote a piece covering this patient’s story and phage therapy’s current challenges more broadly.

  202. Synthetic mRNA drives human cells to make Cpl-1 phage endolysin active against Streptococcus pneumoniae

    Researchers at University Medicine Rostock delivered synthetic mRNA encoding the Cpl-1 phage endolysin into three human cell lines (HEK293T, A549, HepG2), which produced endolysin with activity against Streptococcus pneumoniae. Adding a human lysozyme signal peptide gave a secreted version, and a point mutation avoiding N-linked glycosylation improved killing; the secreted enzyme was active against nine pneumococcal strains, in what the authors describe as the first approach to mRNA-based endolysin therapy.

  203. Silicon photonic-crystal nanotweezers trap and distinguish single phages without labels (Small)

    Integrated resonant photonic crystal cavities in silicon acted as optical nanotweezers that differentiated a single bacterium from a single phage without labeling or surface bioreceptors, and distinguished phages across phenotypically distinct families. The authors describe the work as paving the road to optical nanotweezers in phage therapy protocols.

  204. M13 phage displaying amyloid-β peptides detects Aβ-oligomers in Alzheimer's brain tissue

    Researchers at the University of Minho and partner institutions show that synthetic M13 phages displaying Aβ-derived peptides bind preferentially to amyloid-β oligomers. In hippocampus tissue from APP/PS1 transgenic mice the phages detected small Aβ-aggregates at an early age, before plaques formed, and they revealed similar aggregates in post-mortem hippocampus tissue from Alzheimer's patients.

  205. Neutrophils are not a major determinant of intravenous phage clearance in mice (bioRxiv preprint)

    In this preprint, intravenously administered antipseudomonal phage LPS-5 had blood half-lives of 3.45 and 3.66 hours in wild-type and neutropenic mice, suggesting neutrophil phagocytosis is not a major driver of phage clearance. A gap between qPCR and plaque-assay levels over time points to functional inactivation of circulating phages by circulating factors.

  206. First cultured deep-sea Planctomycetes strain ZRK32 releases a phage that supports nitrogen metabolism

    Researchers at the Institute of Oceanology, Chinese Academy of Sciences cultured a novel deep-sea cold-seep Planctomycetes strain, ZRK32, which they propose to name Poriferisphaera heterotrophicis. Supplementing nitrate or ammonium induced it to release a bacteriophage chronically without host lysis, and the phage's auxiliary metabolic genes let ZRK32 and another marine bacterium metabolize nitrogen.

  207. Vibrio cholerae CBASS antiphage system boosts killing by antifolate antibiotics

    A Nature Microbiology study from the Universities of Würzburg and Tübingen shows that in Vibrio cholerae the CBASS anti-phage signalling system increases sensitivity to antifolate antibiotics up to tenfold and enables bacterial lysis by these otherwise bacteriostatic drugs. The interaction is specific to CBASS systems with closely related nucleotidyltransferases, and antifolate resistance genes abolish it.

  208. Phage Paride kills dormant, antibiotic-tolerant Pseudomonas aeruginosa by direct lytic replication

    A Nature Communications study (open access) describes Paride, a newly isolated Pseudomonas aeruginosa phage that can replicate directly in, and lyse, deep-dormant host cells, whereas other phages tested suspended replication until the host resuscitated. Combined with the carbapenem meropenem, Paride eradicated deep-dormant cultures in vitro and reduced a bacterial infection of a tissue cage implant in mice.

  209. Novel phage endolysin LysAB1245 is active against multiple capsular types of multidrug-resistant Acinetobacter baumannii (PLOS ONE)

    The recombinant endolysin LysAB1245, from phage T1245, showed broad activity against all clinical multidrug-resistant A. baumannii isolates tested across capsular types KL2, 3, 6, 10, 47, 49 and 52, with a reduction of more than 3 log in viable bacteria after 2 hours. It was stable from 4 to 70 C and across pH 4.5 to 10.5, with MIC and MBC of 4.21 ug/mL.

  210. The International Bacteriophage Research Consortium (IBRC) & Open Source Pharma Foundation (OSPF) in association with the Indian Society for Bacteriophage Research and Therapy (SBRT) have started a series of talks by clinicians with experience in delivering Phage Therapy.

    Dr. Mzia Kutateladze from the G. Eliava Institute of Bacteriophages, Microbiology, and Virology will be giving the last talk of the series on December 22, 2023, at 7.00 PM IST. Join to learn about latest developments and successful case studies of phage therapy.

    Register here.

  211. This week Phagecast podcast published a new episode featuring an interview with Jean-Paul Pirnay! Dive into the world of phage therapy in Belgium – how it started, current practices, and future perspectives. This episode is the first of a two-part interview, which explores the initial 100 documented cases, sharing insights into treatment efficacy, adverse reactions, and the challenges faced. Stay tuned for the second part of the interview! Enjoy!

  212. Koen Wortelboer (University of Amsterdam) and colleagues conducted a controlled clinical trial to assess efficacy and safety of sterile fecal filtrate transplantation (FFT) in individuals with metabolic syndrome. Glucose metabolism was similar for both groups, but FFT was well-tolerated, and the phage virion composition was significantly altered two days after FFT (coinciding with more virulent phage-microbe interactions).

  213. Closing the toilet lid does not prevent viral contamination of restroom surfaces, phage MS2 study finds

    University of Arizona researchers, with a co-author from Reckitt (Lysol and Dettol), flushed household and public toilets seeded with bacteriophage MS2, a surrogate for human enteric viruses. Contamination of restroom surfaces did not depend on lid position, and cleaning the bowl with a brush and a commercial product cut contamination of the bowl water by more than 4 log10; the authors suggest disinfecting all restroom surfaces after flushing.

  214. The Nobrega lab at the University of Southampton has launched phagecollection.org, the home of their new initiative to unite citizen scientists searching for phages to combat bacterial infections. They aim to educate the public about AMR and phages, collect clinical isolates and phages, and engage UK policymakers to support phage research and availability as a last resort medicine.

  215. Phage researchers from Belgium, the Netherlands, Germany, and Poland recently gathered at the 2nd BSVoM hands-on workshop on personalized phage therapy, organized by Jean-Paul Pirnay, Maya Merabishvili, and Tea Glonti and held at the Queen Astrid Military Hospital. Here’s what they learned about the process of phage therapy!

  216. Genome-wide CRISPRi essentiality mapping in phages λ and P1 identifies sites for DNA barcoding

    Researchers at the University of California, Berkeley developed a CRISPR interference method to map gene essentiality in phages and applied it to the coliphages λ and P1, largely recapitulating the known essential genes of λ and giving new insights into P1. They also inserted DNA barcodes into newly identified inessential regions to enable identification, quantification and tracking of phages, and caution that CRISPRi polarity can cause false-positive essentiality calls.

  217. Engineered fd phages bind copper ions for possible bioremediation

    Researchers at KIST Europe genetically modified filamentous fd phages to display shortened versions of a Cu(II)-specific peptide (HGFANVA). ICP-MS analyses showed improved Cu(II) binding by the engineered phages compared with wild-type fd, and the authors suggest such virus-based biomaterials could be applied to bioremediation of metal species from environmental samples.

  218. Phages for Global Health's president, Dr. Tobi Nagel, has been selected as 1 of 22 Fulbright Global Scholars in this year's cohort!

    Funded by the US Congress, Tobi’s project will help establish phage regulatory systems in Africa and Asia by compiling and sharing information on how phage-based drugs are currently regulated in the US, Europe and Australia with national leaders in Africa and Asia.

    Congratulations Tobi!!

  219. Phage Research Progress Assessment for Collective Funding Application

    Dear Phage Research Community,

    We invite you to participate in this brief survey to assess the current state of phage research in various labs. Your valuable insights will help us understand the progress and challenges in the field with the ultimate goal of knowing the state of phage research in Africa. Please take a few minutes to provide information about the stage of your phage work, collaborations, challenges, and future plans. Your responses will contribute to a comprehensive overview of phage research, supporting collaborative efforts and funding applications.

    Thank you for your participation and contribution to advancing phage research.

    Sincerely,

    Africa Phage Forum team

  220. Novel Streptomyces satellite-helper phage systems Mulch and Flayer include a virulent satellite phage

    Researchers at the University of Maryland Baltimore County describe two satellite-helper phage systems infecting Streptomyces species, which they call the first examples of bacteriophage satellite viruses. The Flayer satellite does not appear to integrate into the host genome and has a tail adaptation that lets it attach to its helper for simultaneous co-infection.

  221. Temperature-induced DNA density transition in phage λ capsid revealed by neutron scattering

    Lund University researchers used contrast-matching small-angle neutron scattering to show that DNA packaged in the phage λ capsid undergoes a density and volume transition in the core as temperature rises from 20 °C to 40 °C, close to the physiological temperature of infection (about 37 °C). The core DNA becomes less dense with fewer packing defects and more mobile, which the authors link to rapid genome ejection into a host cell.

  222. Workshop on personalized phage therapy: from lab to the patient - Join the 2nd edition of this exciting workshop Nov 30-Dec 2 in Brussels, Belgium hosted by BSVoM and coordinated by Dr. Jean-Paul Pirnay, Dr. Maya Merabishvilli, and Dr. Tea Glonti, offering theoretical sessions and hands-on lab experiences on techniques for isolating, characterizing, and producing therapeutically relevant phages. Register here.

  223. Pf4 phage bound to bacterial vesicles dampens neutrophil responses to Pseudomonas aeruginosa

    Stanford researchers show that the temperate filamentous phage Pf4 of Pseudomonas aeruginosa is decorated with outer membrane vesicles whose short RNAs trigger TLR3-dependent type I interferon production and suppress antibacterial cytokines and chemokines, including CXCL5, which limits neutrophil chemotaxis. In a mouse acute pneumonia model, Pf4 with vesicles produced less neutrophil infiltration than purified Pf4, suggesting phages may dampen inflammation at sites of colonization or infection.

  224. Mammalian cells internalize phage T4 and use it as a resource for growth and survival

    Monash University researchers applied highly purified phage T4 to mammalian cells in vitro and found it was rapidly internalized into macropinosomes without activating the TLR9 or cGAS-STING DNA-sensing pathways. T4 instead activated AKT-dependent signalling that increased cell metabolism and survival and down-regulated CDK1, leading the authors to conclude that mammalian cells take up phages as a resource to promote growth and metabolism.

  225. T5-like phage BF23 evades host restriction-modification and methylation

    Researchers at Skoltech report the full genome sequence and virion protein content of Escherichia coli phage BF23, a close relative of T5 that was isolated in the mid-twentieth century. BF23 resists Types I/II/III restriction-modification systems when their recognition sites lie outside its terminal repeats and avoids host-mediated methylation, which the authors propose is a common feature of Tequintavirus and Epseptimavirus phages.

  226. Phage-based digital biomolecular sensor (P-DBS) detects MCF-7 breast cancer cells

    Singapore University of Technology and Design researchers combined M13-conjugated polyethylene glycol with tungsten disulfide nanosheets to build a Phage-based Digital Biomolecular Sensor (P-DBS) for MCF-7 cancer cells. The sensor reached a detection limit of 12 cells per μL with a 200 μs reading length, which the authors present as a route to early cancer diagnosis, staging and monitoring.

  227. This month on the PhageCast podcast, a new episode format has been released, with a focus on short stories from PhD students or early stage researchers. It has been opened up with Veronique Ongenae and her recently released paper: "Reversible bacteriophage resistance by shedding the bacterial cell wall".

  228. I am a phage enthusiast and my abstract on phage therapy was accepted by the African Genetic Biocontrol Consortium for oral. However, I had to cater for registration, accommodation and travel fees. Unfortunately, I had to decline my participation in this conference. One of my abstracts has just been accepted by another organization and I am told to do same thing. Therefore, I am seeking travel grants to raise awareness on phage therapy in developing countries.

    Regards, Noutin Michodigni, PhD in Molecular Biology and Biotechnology. Please contact me directly at fmichodign@gmail.com.

  229. From @scientiff via Twitter: Hey #scitwitter! I’m troubleshooting some #phage DNA extraction woes with our undergrads. We use phenol-chloroform-isoamyl and phase-lock gels for the process but we’re still getting high 260/230 after elution. Any advice on DNA clean up would be much appreciated!

  230. Virus-based pyroelectricity: engineered M13 phage generates an electrical potential from heat

    University of California, Berkeley researchers report the first observation of heat-induced electrical potential generation on a virus, studying the pyroelectric properties of the M13 phage. Modifying the pVIII coat protein with different numbers of glutamate residues tuned the effect, with the most polarized phage reaching a pyroelectric coefficient of 0.13 µC m-2 °C-1; the authors see potential in biosensors and bioelectric materials.

  231. Katelyn McNair, the creator of Phanotate, has introduced a new tool called Genotate, designed to identify and predict coding genes in phage genomes.

    Now in final stages of development, it’s built to take your phage genome annotation and analysis to the next level. They’re looking for dedicated volunteers who are passionate about phage genomics and annotation to help test and refine Genotate.

    Contact Katelyn to get involved!

  232. Pediococcus inopinatus with a well-developed CRISPR-Cas system dominates long-term fermented kimchi

    Researchers at the World Institute of Kimchi found that Pediococcus inopinatus is generally dominant in Mukeunji, long-term fermented kimchi in the final stage of fermentation. Its genome has a well-developed CRISPR system with an extra copy of the csa3 gene and many actively expressed spacers, which the authors say enables it to dominate, and they propose a succession model for kimchi lactic acid bacteria.

  233. Phage PASA16 compassionate-use case series in 16 patients with refractory Pseudomonas aeruginosa infections

    A case series from the Israeli Phage Therapy Center describes phage PASA16, provided pro bono by Adaptive Phage Therapeutics, given intravenously, locally or topically with antibiotics to 16 patients with non-resolving Pseudomonas aeruginosa infections (data for 15), mainly osteoarticular and foreign-device-associated. A few minor side effects were noted and a good clinical outcome was documented in 13 of 15 patients (86.6%).

  234. Cell-free synthesis of phage T7 improved up to tenfold with engineered E. coli lysates

    Tulane University researchers used inducible CRISPR interference to manipulate 18 E. coli BL21 genes and identify effectors of phage T7 propagation, then modified the bacterial lysate used for cell-free bacteriophage synthesis accordingly. Overexpressing translation initiation factor IF-3 (infC) and the small RNAs OxyS and CyaR, or repressing the RecBCD exonuclease, raised T7 yields in vitro by up to 10-fold, which the authors say could ease phage manufacturing bottlenecks.

  235. Melissa Su Juan Chee (National University of Singapore) and colleagues have uncovered a new process of gene transfer in Staphylococcus aureus mediated by staphylococcal pathogenicity islands (SaPIs) that can mobilize and transfer two pathogenicity islands in a single particle, highlighting previously unknown roles of pathogenicity islands in bacterial virulence.

  236. Developing Scientific Guidelines for Phage Banks

    The next meeting for this project will be held on August 6th at Evergreen State College and will be accessible online. We will continue to brainstorm about the topics that should be covered in the phage bank guidelines.

    The meeting will run from 1:15 - 5:00 PM (PDT). For those attending in-person, lunch will be provided and will be available from 12:15 - 1:15 PM (PDT).

    If you would like to attend (either in-person or virtually), please confirm this by emailing Fran Hodges (francesca.hodges@iuk.ktn-uk.org) by August 2nd.

    Thanks! Tobi & Fran

  237. I am a Ph.D. graduate in Phage Biology and Therapy seeking a postdoctoral position in phage research. My research expertise lies in the pre-clinical assessment of phages with a focus on phage therapy. I have valuable experience from working as a graduate research fellow at the Laboratory of Molecular Biology, NIH, and have authored scientific articles. I am passionate about exploring novel phage-based therapeutic approaches, including phage-host interaction. I am eager to collaborate and contribute to phage research.

    Sincerely, Gunaraj Dhungana, Ph.D. in Phage Biology and Therapy

  238. Developing Scientific Guidelines for Phage Banks

    The next meeting for this project will be held on August 6th at Evergreen State College and will be accessible online. We will continue to brainstorm about the topics that should be covered in the phage bank guidelines.

    The meeting will run from 1:15 - 5:00 PM (PDT). For those attending in-person, lunch will be provided and will be available from 12:15 - 1:15 PM (PDT).

    If you would like to attend (either in-person or virtually), please confirm this by emailing Fran Hodges (francesca.hodges@iuk.ktn-uk.org) by August 2nd.

    Thanks! Tobi & Fran

  239. Hello, I’m working on my bachelor’s thesis and I need specific information about phage and bacterial genetics. Do you know or could you help me find sources, if it is possible for bacteria to acquire and use phage genes for their own benefit after they neutralise phage infection (through CRISPR/CAS for example)? I don’t mean lysogeny, pseudo-lysogeny, or phage fragment storage for “bacterial immunity” but something like horizontal gene transfer from degraded phage DNA to the bacterial genome. Do you know any papers that discuss this topic? Email: vojtatlusty@gmail.com

  240. Engineered reporter phages detect E. coli, Enterococcus and Klebsiella in urine within 5 hours

    ETH Zurich researchers genetically engineered two virulent phages per uropathogen (E. coli, Enterococcus spp., Klebsiella spp.) to express a nanoluciferase reporter on infection and tested the bioluminescence assay on 206 patient urine samples. Specificity was 99% for each pathogen and sensitivity 68%, 78% and 87% respectively, at a resolution of at least 10^3 CFU/ml within 5 hours; the authors also see reporter phages as companion diagnostics for matching patients to therapeutic phages.

  241. The Sullivan lab is hosting the 2023 Viromics Workshop October 11-13, 2023, in-person at the Ohio State University in Columbus, OH. You can expect deep dives on virus identification, virus taxonomy/classification, databases, ecogenomics pipeline, auxiliary metabolic gene analysis, virus-host linkages, and genome annotation.

  242. Personalized aerosolized phage treatment of a chronic multidrug-resistant Pseudomonas aeruginosa lung infection

    Nature Communications case report of a 41-year-old man with Kartagener syndrome and a life-threatening chronic multidrug-resistant Pseudomonas aeruginosa lung infection who was treated successfully with iterative aerosolized phage treatments directed against his own isolate. Phage titres in sputum indicated phage replication in the patient and all isolates recovered after treatment stayed phage susceptible; clinical improvement was achieved without complete eradication of P. aeruginosa.

  243. Evergreen event

    The Evergreen International Phage Meeting is happening Aug 6-11, 2023, live in Olympia, Washington, USA! This is an in-person meeting, better known as Phage Camp! Come present your phage work, climb mountains with other phage scientists, play phage-related board games, see a special showing of the Salt in My Soul documentary, and much more! This is the 50th anniversary meeting, hosted by Betty Kutter, Queen of Phage.

  244. The 4th International Conference on Bacteriophage Research and Antimicrobial Resistance, organized jointly by the CAS in Botany, University of Madras, and Water and Steam Chemistry Division of Bhabha Atomic Research Centre Facilities, will take place from September 28-30.

    With the theme of "Harnessing the Bacteriophages for Human Well-being," this conference aims to bring together scientists from around the world to discuss the latest findings in bacteriophage research and their potential applications in medicine, agriculture, and environmental science.

    Submit your abstract here!

  245. Intracellular phage tail-like nanostructures affect osmotic stress susceptibility of Streptomyces lividans

    Streptomyces lividans, a model filamentous Gram-positive bacterium with conserved contractile-injection-system gene clusters, makes phage tail-like particles (SLPs) that stay in the cytoplasm instead of being released. Without SLPs, aerial mycelia form later on hyperosmotic solid medium and growth drops in hyperosmotic liquid medium; SLPs are associated with a cytoplasmic protein interaction network that includes ribosomal and cell-wall-related proteins (mSphere, 2023).

  246. The Evergreen International Phage Meeting is happening Aug 6-11, 2023, live in Olympia, Washington, USA! This is an in-person meeting, better known as Phage Camp! Come present your phage work, climb mountains with other phage scientists, play phage-related board games, see a special showing of the Salt in My Soul documentary, and much more! This is the 50th anniversary meeting, hosted by Betty Kutter, Queen of Phage.

    Abstracts due June 20!

  247. Dear phage researchers, You’re invited to participate in a new initiative to draft guidelines for managing phage banks, led by Tobi Nagel (Phages for Global Health) and Francesca Hodges (Innovate UK KTN).

    Stage 1 (online survey: OPEN NOW): Define topics to include

    Stage 2 (online survey): Gather input on each topic

    Stage 3 (in-person & virtual discussions): Discuss responses, differing opinions

    • Sunday, July 2nd in Tbilisi, Georgia (just before VoM 2023
    • Sunday, August 6th in Olympia, Washington, USA (just before Evergreen)

    Stage 4: Draft guidelines for publication (in a journal and at a conference)

    Please fill out the survey for Stage 1 (10-15 min)

    Tobi Nagel: tobi@phagesforglobalhealth.org Francesca Hodges: francesca.hodges@iuk.ktn-uk.org

  248. Attention all phage researchers! You’re invited to participate in an exciting initiative to help establish draft phage bank management guidelines for the community.

    Please register your interest in participating here.

    The process will unfold in stages:

    Stage 1 (online survey, stay tuned — coming soon): Help define what topics should be included in the guidelines

    Stage 2 (online survey): Collect detailed input on each of the topics identified in Stage 1

    Stage 3 (in-person meetings): Please note that we have now added a second meeting in July, in addition to the first meeting in August - feel free to attend either or both

    1. July 2nd (day before VoM 2023 in Georgia): Discuss compiled responses to online surveys, especially on topics for which there are differing opinions. Virtual options will be available for remote attendees.
    2. August 6th (day before Evergreen in USA): This will be a second iteration of the July 2nd meeting, taking into account group opinions that have evolved. Virtual options will be available for remote attendees.

    A limited number of scholarships will be available for those from lower- and middle-income countries who wish to attend this meeting. Please email Ria Kaelin (tescphage@gmail.com) and Tobi Nagel (tobi@phagesforglobalhealth.org) if you would like to apply for a scholarship.

    Stage 4 (virtual discussions): Engage in virtual discussions to draft and finalize guidelines. Leaders will develop drafts for each topic and hold virtual meetings. Compiled draft will be shared with the group, and a final version will be published in a peer-reviewed journal and presented at VoM 2024.

    To get started, please register your interest by completing this pre-questionnaire.

    For questions or suggestions, please email:

    Tobi Nagel: tobi@phagesforglobalhealth.org Francesca Hodges: francesca.hodges@iuk.ktn-uk.org

  249. This week Phagecast published a new episode featuring an interview with Martin Loessner! You can hear very valuable insights in what is important to have a successful scientific career together with some phage science: how L-forms become resistant to phages & endolysins, and the implications that this has in phage therapy and endolysin research. Enjoy!

  250. Evergreen event

    The Evergreen International Phage Meeting is happening Aug 6-11, 2023, live in Olympia, Washington, USA! This is an in-person meeting, better known as Phage Camp! Come present your phage work, climb mountains with other phage scientists, play phage-related board games, see a special showing of the Salt in My Soul documentary, and much more! This is the 50th anniversary meeting, hosted by Betty Kutter, Queen of Phage.

  251. The Evergreen Phage Meeting organizing committee invite you to take part in a photo contest and get a chance to win awesome phage swag! Send us your favorite photo featuring or taken with Betty Kutter, and let's shower her with love at the 25th Biennial Evergreen International Phage Meeting, where your photo will be showcased in a special slide show to honor the Queen of Phage. Dig through your vintage photo album or browse your digital files - we're excited to see the amazing moments you've captured! Good luck! Submit photos to tescphage@gmail.com.

  252. Attention all phage researchers! You’re invited to participate in an exciting initiative to help establish draft phage bank management guidelines for the community.

    To get started, please register your interest by completing this pre-questionnaire.

    The process will unfold in stages:

    Stage 1 (online survey): Gather input from phage experts worldwide on the key topics. Compiled responses shared with participants for input.

    Stage 2 (online survey): Collect input, engage leaders to generate specific questions. Compiled responses shared again, highlighting topics with differing opinions.

    Stage 3 (in-person meeting): Join in-person July 2nd (day before VoM 2023 in Georgia), to discuss compiled responses. Virtual options available for remote attendees.

    Stage 4 (virtual discussions): Engage in virtual discussions to draft and finalize guidelines. Leaders develop drafts for each topic, hold virtual meetings. Compiled draft shared with group; final version published in a peer-reviewed journal, presented at VoM 2024.

    Register your interest now and stay tuned for the first survey.

    For questions or suggestions, please email: Tobi Nagel: tobi@phagesforglobalhealth.org Francesca Hodges: francesca.hodges@iuk.ktn-uk.org

  253. Evergreen event

    The Evergreen International Phage Meeting is happening Aug 6-11, 2023, live in Olympia, Washington, USA! This is an in-person meeting, better known as Phage Camp! Come present your phage work, climb mountains with other phage scientists, play phage-related board games, see a special showing of the Salt in My Soul documentary, and much more! This is the 50th anniversary meeting, hosted by Betty Kutter, Queen of Phage.

  254. T4 bacteriophage-based artificial viral vectors for human genome remodeling

    Nature Communications paper that builds artificial viral vectors (AVVs) from bacteriophage T4 components: a 120 × 86 nm capsid shell that holds 171-Kbp DNA and thousands of protein copies is loaded with DNAs, proteins, RNAs and ribonucleoproteins and coated with cationic lipid to enter human cells. As proof of concept, AVVs were assembled to deliver the full-length dystrophin gene or to perform genome editing, recombination, replacement, expression and silencing.

  255. UK public attitudes to phage therapy: survey of 787 people

    PLOS ONE survey (N = 787, Prolific) of UK public awareness and acceptance of phage therapy found moderate acceptance, a mean likelihood of 4.71 on a 1-7 scale. Priming participants to think about novel medicines and antibiotic resistance raised acceptance, success and side-effect rates, treatment duration and approval status shaped preferences, and acceptance was higher when phage therapy was described without words such as "kill" and "virus".

  256. Phages for Global Health is currently hosting a workshop in Southeast Asia in collaboration with the UST BEATS Research Group (run by Donna May Papa) in the Philippines. Phage scientists from the Philippines, Indonesia, Vietnam, Sri Lanka, Thailand, and Malaysia are working together to get trained in phage biology. Check out their Facebook group, where they’re updating with workshop pictures daily!

  257. Congratulations to Evelien Adriaenssens, who has passed her tenure review and become a permanent group leader at The Quadram Institute! Evelien has supported/driven so many phage community efforts over the years. She’s taught us all about how to name and classify our phages & annotate their genomes (watched by almost 2000 of you!), and given feedback on almost every crazy idea we’ve had. (We probably wouldn’t still be doing this whole Phage Directory thing without her!)

    Here’s her tweet — let’s all spam her with congratulatory messages!

  258. “Resistant bacteria do a lot of taking…” The Center for Disease Control published Diane Shader Smith’s story of her daughter Mallory’s battle against a superbug, how phage therapy could have saved her life, and why more people need to share their personal AMR stories to help put a face to these issues.

  259. This paper by Samuel Barnett and Daniel Buckley explores the role of soil viruses in the carbon cycle. They added 13C-labelled carbon sources to soil and used metagenomic-SIP to detect 13C assimilation by viruses and their putative hosts. They found that the viral shunt promotes microbial turnover in soil following new C inputs, altering microbial community dynamics and facilitating soil organic matter production.

  260. Cryo-EM structure of the f1 filamentous phage, including its tips

    Nature Communications paper using cryo-electron microscopy of short Ff-derived nanorods to determine a structure of a filamentous virus (f1, fd or M13 phages) including the tips. Combined with mutagenesis, it identifies phage domains important for attacking bacteria and releasing progeny and supports new models of the phage lifecycle; Ff phages have a wide range of biotechnology applications.

  261. The Phage Therapy Today podcast interviewed Johan Wikstroem, the CEO of tolka.ai, about his story in transitioning from tech to biotech and founding a phage therapy company with the goal of treating his own M. abscessus infection and helping others with similar conditions. In the episode "The Ultimate Precision Medicine Story," Wikstroem discusses the challenges and successes in his journey.

  262. Kids Research (part of Sydney Children's Hospitals Network) is hosting a webinar on May 19, 2023 at 2:00 PM AEST on phage therapy entitled "Phage Therapy in Australia: STAMPing out problematic infections". The webinar will be presented by Phage Australia and local experts, including Ameneh Khatami, Jon Iredell, Stephanie Lynch, Tony Lai, Kylie Sangalang, Rachael Sloane, and will cover the science behind phage therapy, clinical eligibility, and practical nursing perspectives.

  263. Our volunteer Atif Khan was selected for the FEMS #OnThisDay volunteer team. The #OnThisDayteam aims to assemble a collection of historically important microbiology events for every single day of the year. These events could be interesting discoveries, the dates of seminal scientific publications, the important moments in the lives of famous microbiologists, or anything that would pique the interest of the microbiology community! Great job Atif!

  264. Engineered phage with antibacterial CRISPR–Cas selectively reduce E. coli burden in mice

    Nature Biotechnology paper on SNIPR001: from a library of 162 wild-type phages, eight with broad E. coli coverage were selected and engineered with tail fibers and CRISPR–Cas machinery to target E. coli. A combination of the four most complementary phages, SNIPR001, was well tolerated in mouse models and minipigs and reduced E. coli load in the mouse gut better than its individual components.

  265. Jody McKerral and colleagues analyzed >2.5 million prophages from >500,000 bacterial genome assemblies, revealing that 94% are lysogens containing at least one identifiable prophage. The findings provide a new framework for identifying phages in environmental datasets, diverse bacterial phyla, and different locations.

  266. The UK Phage Innovation Showcase will take place May 16th, 2023 from 9:30am-4pm in Leicester and online. The event is organized by Innovate UK KTN's Phage Innovation Network and the University of Leicester's recently launched Centre for Phage Research. This event celebrates its launch and showcases the knowledge and experience in phage research and development in the UK.

    All in-person spaces have now been filled, but you can still sign up to watch the livestream of the keynote speeches and Q&A sessions on the day.

  267. The European Medicines Agency (EMA) is organizing a Focus Group meeting on 11 May 2023 to discuss the draft guideline on the quality, safety, and efficacy requirements for bacteriophage therapy in veterinary medicines. The aim is to establish a suitable regulatory framework for these innovative therapies and reduce the use of antibiotics.

  268. Poly(acrylic acid) prevents bacteriophage infection of bacterial hosts

    University of Warwick and Cytiva authors show that poly(acrylic acid) prevents phage-induced killing of bacterial hosts and phage replication without affecting induction of recombinant protein expression, and was more active than poly(methacrylic acid). Initial evidence points to a virustatic rather than virucidal mechanism; the authors present the low-cost additive as a scalable way to reduce phage contamination in bioprocessing (J Am Chem Soc, 2023).

  269. iPHoP: integrated machine-learning framework to predict hosts of metagenome-derived phages and archaeal viruses

    iPHoP, from the DOE Joint Genome Institute, is a two-step framework that integrates multiple methods to predict host taxonomy at the genus rank for viruses infecting bacteria and archaea while retaining a low false discovery rate. Applied to metagenome-derived virus genomes from the IMG/VR database, it provides extensive host predictions to guide characterization of uncultivated viruses.

  270. In celebration of International Women's History Month, this episode of the Phage Files podcast looks back at female phage researchers' contributions to early phage research. The hosts interview Dr. Elizabeth Kutter (Evergreen State College), who is considered the Mother of Phage Research in the modern scientific era, and Prof. Martha Clokie (University of Leicester), 2020's recipient of the Outstanding Women in STEM.

  271. Top Agar Question

    This is a basic question but one I do need advice with. My high school phage team will begin looking for a phage next fall from a new host. The host has not been studied much for phages. How do you choose a top agar for new hosts/phages? Is there a generic TA that works well? We currently use MBTA for Mycobacterium but I did not know if top agars are phage specific. Thanks for your guidance.

  272. The UK parliament recently heard evidence on phages for AMR. According to Stephanie Lesage via LinkedIn: “There was a general consensus on the need to embrace the biological and unique nature of phages and find more suitable approaches to stringent GMP production, but also make regulations more flexible by adopting a more pragmatic framework to ensure phages/cocktails can be updated to follow epidemiological evolutions and the unique requirements of some patients.”

  273. From the Phagebiotics Research Foundation:

    Greetings Phage friends!

    The 25th biennial International Evergreen Phage Meeting is set to kick off in person, in full Evergreen fashion, with Dr. Betty Kutter at the Evergreen State College. Mark your calendar for AUG 6-11th 2023! Phagebiotics Research Foundation is looking forward for you to participate and we are counting down these final few days until the launch of the 2023 website!

    We ask you to hold tight, while we are hard at work finalizing the details and preparing for a great meeting. Stay tuned for further announcements and please follow us on social media to catch the latest announcements and updates.

    P.S. We are going to Mt. Rainier on Betty's Birthday, Fri. AUG 11th 2023! Please plan on attending this special day to celebrate and hike with Betty.

    Hosted by: Phagebiotics Research Foundation & Phage Directory Phage Meeting: Aug 6-11 2023 Multiple Workshops: Aug 6 and TBA Mt. Rainier: AUG 11 2023

  274. From the Phagebiotics Research Foundation:

    Greetings Phage friends!

    The 25th biennial International Evergreen Phage Meeting is set to kick off in person, in full Evergreen fashion, with Dr. Betty Kutter at the Evergreen State College. Mark your calendar for AUG 6-11th 2023! Phagebiotics Research Foundation is looking forward for you to participate and we are counting down these final few days until the launch of the 2023 website!

    We ask you to hold tight, while we are hard at work finalizing the details and preparing for a great meeting. Stay tuned for further announcements and please follow us on social media to catch the latest announcements and updates.

    P.S. We are going to Mt. Rainier on Betty's Birthday, Fri. AUG 11th 2023! Please plan on attending this special day to celebrate and hike with Betty.

    Hosted by: Phagebiotics Research Foundation & Phage Directory Phage Meeting: Aug 6-11 2023 Multiple Workshops: Aug 6 and TBA Mt. Rainier: AUG 11 2023

  275. Our @PhageFiles podcast is finally here! Tune in on Spotify, Google Podcasts, Deezer and Amazon Music to listen to our first episodes. In our podcast we will discuss all things phage. You will hear from researchers and entrepreneurs interested in different aspects of phage biology. But first, we will tell you about the fascinating history of phage discovery.

    We would like to thank @Ellie_Jameson for our beautiful phage mini versions. Check out more of Ellie’s artwork here!

    Stay tuned!

    — @ZuzanaPaleckov1 & @quinnit_2_winit

  276. Preprint finds mammalian cells internalize phage T4 and use it as a food source

    A bioRxiv preprint reports that highly purified phage T4 was rapidly internalized in vitro by A549 lung epithelial cells, MDCK-I kidney cells and mouse bone marrow-derived macrophages without activating TLR9 or cGAS-STING inflammatory pathways. T4 internalization activated AKT-dependent pathways that increased cell metabolism, survival and actin reorganization and down-regulated CDK1; the authors conclude that mammalian cells take up phages as a food source.

  277. The documentary, Salt in My Soul, follows the life of Mallory Smith, who was diagnosed with cystic fibrosis at age 3, and a resistant infection at age 15. In her final days, her father attempted to arrange phage therapy for her, but it was just a little too late.

    In Sydney next week? Attend the Sydney screening of Salt in My Soul + expert panel, and hear from international and local experts in AMR and phage therapy, including Ameneh Khatami, Ruby Lin, Jon Iredell (Phage Australia), Richard Alm (CARB-X) and Diane Shader Smith (Mallory's mother / AMR advocate).

    When: Thu., 16 March 2023, 5:00 pm – 8:30 pm AEDT.

  278. Our @PhageFiles podcast is finally here! Tune in on Spotify, Google Podcasts, Deezer and Amazon Music to listen to our first episodes. In our podcast we will discuss all things phage. You will hear from researchers and entrepreneurs interested in different aspects of phage biology. But first, we will tell you about the fascinating history of phage discovery.

    We would like to thank @Ellie_Jameson for our beautiful phage mini versions. Check out more of Ellie’s artwork here!

    Stay tuned!

    — @ZuzanaPaleckov1 & @quinnit_2_winit

  279. From the Phagebiotics Research Foundation:

    Greetings Phage friends!

    The 25th biennial International Evergreen Phage Meeting is set to kick off in person, in full Evergreen fashion, with Dr. Betty Kutter at the Evergreen State College. Mark your calendar for AUG 6-11th 2023! Phagebiotics Research Foundation is looking forward for you to participate and we are counting down these final few days until the launch of the 2023 website!

    We ask you to hold tight, while we are hard at work finalizing the details and preparing for a great meeting. Stay tuned for further announcements and please follow us on social media to catch the latest announcements and updates.

    P.S. We are going to Mt. Rainier on Betty's Birthday, Fri. AUG 11th 2023! Please plan on attending this special day to celebrate and hike with Betty.

    Hosted by: Phagebiotics Research Foundation & Phage Directory Phage Meeting: Aug 6-11 2023 Multiple Workshops: Aug 6 and TBA Mt. Rainier: AUG 11 2023

  280. Erytech (a red blood cell-based therapeutics company) and Pherecydes (a phage therapy company) will merge to form a new company, whose name is yet to be disclosed, and redirect Erytech's financial resources, people and network toward Pherecydes' phage therapy programs.

  281. In a new Nature Microbiology paper, Jan Wohlfarth (ETH Zurich) and colleagues show that Listeria and Enterococcus can evade phage predation by transient conversion to a cell wall-deficient L-form state, which is triggered by endolysins disintegrating the cell wall 'from without'. Results suggest this represents a population-level persistence mechanism to evade eradication by phage. Read also this discussion of the paper by Thomas Denes (University of Tennessee, Knoxville).

  282. In a new paper in Cell Reports, Beatriz Beamud (Universidad Complutense de Madrid) and colleagues report on their study of the genetic determinants of host tropism in Klebsiella phages. They isolated 46 phages to challenge 138 representative clinical Klebsiella pneumoniae isolates, and found that <2% of 6,319 phage-host combinations tested yielding detectable interactions. Capsule diversity was found to be the main factor restricting phage host range.

  283. Mycobacterial protein Lsr2 is required for productive mycobacteriophage infection

    Live-cell fluorescence microscopy shows that mycobacteriophage infection of Mycobacterium smegmatis depends on the host nucleoid-associated protein Lsr2, which reorganizes away from host replication foci to set up zones of phage DNA replication. Cells lacking Lsr2 still lyse when infected but fail to produce the consecutive phage bursts that spread infection to neighbouring cells (Nature Microbiology, 2023).

  284. The next Viruses of Microbes conference will be held in Tbilisi, Georgia on July 3-7, 2023. The conference marks a new era in viral research which has begun with the recognition of viruses of microorganisms – viruses of bacteria, archaea, and microbial eukaryotes as predominant component of the biosphere and led to the identification of these viruses as major players in the global ecology, public health, microbial physiology, and evolution. Registration open now (and limited to 500 participants).

  285. Ben Chan (Center for Phage Biology & Therapy, Yale University) and colleagues report the use of a personalized, inhaled phage therapy for treating P. aeruginosa infections in 9 CF adults, with the goal of selecting phages that target bacterial cell surface receptors that contribute to antibiotic resistance or virulence. Results showed that phage therapy: 1) reduced sputum P. aeruginosa, 2) showed evidence for predicted trade-offs in most subjects, and 3) improved lung function.

  286. Registration is now open for An Unfinished Life: AMR Awareness Australia: In collaboration with organizations across Australia, Diane Shader Smith and Richard Alm of CARB-X are hosting a multi day, multi city, multi speaker event to premiere the Salt in My Soul film and facilitate discussions of AMR and its impacts on patients. In person events will take place March 3-16 across Australia, including Perth, Sydney, Melbourne, Brisbane and Adelaide. Key questions: Why hasn't AMR been solved yet? What needs to happen?

  287. Swapnil Ganesh Sanmukh (Institute for Bioengineering of Catalonia) and colleagues published a new paper in MDPI Cells on accessing the in vivo efficiency of clinically isolated phages against uropathogenic and invasive biofilm-forming Escherichia coli strains for phage therapy.

  288. Translation-inhibiting antibiotics can antagonize phage infectivity by blocking deployment of anti-CRISPR counter-defenses

    University of Exeter authors show, using Pseudomonas aeruginosa PA14 and phage DMS3vir, that antibiotics targeting protein translation raise CRISPR-Cas immunity against phages carrying anti-CRISPR (acr) genes by interfering with production of the phage's counter-defense proteins. Such phages amplify on CRISPR-Cas bacteria without antibiotics but not with them, which also protects the bacteria from lysis (PNAS, 2023).

  289. The Ibadan Bacteriophage Research Team, an undergraduate SEA-PHAGES team at the University of Ibadan, Nigeria, announces the launch of the 2nd edition of the team’s journal issue, PHAMILIA. This is the very first undergraduate research journal focused on bacteriophage biology. It showcases publications on diverse subjects of bacteriophage biology, from the team and other guest writers. To download:  https://ibadanphageresearchteam.org/

  290. The Ibadan Bacteriophage Research Team, an undergraduate SEA-PHAGES team at the University of Ibadan, Nigeria, announces the launch of the 2nd edition of the team’s journal issue, PHAMILIA. This is the very first undergraduate research journal focused on bacteriophage biology. It showcases publications on diverse subjects of bacteriophage biology, from the team and other guest writers. To download:  https://ibadanphageresearchteam.org/

  291. Exciting day 🤩 Our newly born GIVoM - Gruppo Italiano Virus of Microbes met for the first time! Italians – in the country and abroad 🇮🇹 - working in this field 🧫🦠🧬 will gather every month to share our research and support each other.❗️PM if you want to know more about this! - via Michela Gambino on LinkedIn

  292. Cole Matrishin (University at Buffalo) and colleagues published a new preprint on how phages are unrecognized players in oral pathogen Porphyromonas gingivalis ecology, contributing to strain-level diversity and the species pangenome. They demonstrate that prophages harbored by a model strain of the pathogen are active, producing extracellular viral particles.

  293. Ciliate Halteria can grow on a diet of chloroviruses

    University of Nebraska-Lincoln authors show that small protists can consume viruses and grow and divide given only viruses to eat; the ciliate Halteria sp. foraging on chloroviruses shows dynamics similar to other microbial trophic interactions. They suggest virus consumption redirects energy up food chains beyond the viral shunt (PNAS, 2023). A virus-ecology finding; the viruses studied were chloroviruses.

  294. The Phage Australia Clinical Network has published the STAMP Protocol for phage therapy. This is an open-label, single-arm trial investigating a standardised treatment and monitoring protocol for phage therapy. The aim is to recruit 50–100 patients over 5 years, from any public or private hospitals in Australia. The primary outcome is safety at day 29. Secondary outcomes include long-term safety (6 months+ following phage therapy), and feasibility, measured as the proportion of participants with >80% of minimum data available for analysis.

  295. In a new study published in Frontiers in Cellular and Infection Microbiology, Sheetal Patpatia (University of Helsinki) and colleagues describe how they set up a rapid hydrogel-based liquid phage susceptibility assay (PST) for the selection of phages for therapeutic use and how they established a “ready-to-screen” plate concept, where phages are readily stored in hydrogel as small droplets in microtiter plate wells.

  296. In this study, a novel Pseudomonas phage, vB_PaeS_VL1 (VL1), was isolated from urban sewage. Phylogenetic analyses revealed that VL1 is a novel species in the genus Litunavirus of subfamily Migulavirinae. The VL1 is a virulent phage as no genes encoding lysogeny, toxins or antibiotic resistance were identified. The therapeutic potential of phage VL1 was investigated and revealed that approximately 56% (34/60 strains) of MDR P. aeruginosa strains could be lysed by VL1.

  297. Sprayable phage microgels cut E. coli O157:H7 on food by up to 6 logs (McMaster, Nature Communications)

    McMaster University researchers (Lei Tian, Zeinab Hosseinidoust and colleagues) crosslinked half a million filamentous phages into each soft microgel, producing over 35,000 microgels per square centimetre of film template, a 13-billion-phage community. Loaded with virulent phages, the sprayable microgels reduced heavy loads of multidrug-resistant E. coli O157:H7 on food products by up to 6 logs in 9 hours, bringing contaminated lettuce below the detection limit. The work was published in Nature Communications on 5 December 2022.

  298. Phages for Global Health is planning to deliver hands-on phage workshops in Africa and Asia again, with a new curriculum that incorporates the best parts of the virtual teaching from the past year into an updated workshop curriculum with 2 components:

    • A series of virtual lectures through which phage experts from around the world will teach the key aspects of phage biology and discuss potential antibacterial applications of phages in crops, aquaculture, animals and people
    • An in-person training during which the participants will practice isolating phages from local environments in Africa and Asia and begin characterizing them

    Their goal is to deliver two trainings in 2023: one for scientists from Southeast Asia and one for those in West Africa. In order to accomplish that, we need to raise the necessary funds. Please consider partnering with Phages for Global Health by making a tax deductible donation!

  299. The Africa Phage Forum will be hosting a webinar on December 6th, 2022 at 3:00 PM East Africa Time (EAT) or 12 PM GMT. The webinar, titled 'Safety Evaluation of Phages Infecting Carbapenem-Resistant Klebsiella pneumoniae for Therapy in Low-Resource Settings', will be given by Dr Noutin F. Michodigni, Ph.D. Register here.

  300. The Department of Applied Genetics, Karnatak University in association with the Society for Bacteriophage Research and Therapy, India is organizing the 3rd International Conference on Bacteriophage Research and Antimicrobial Resistance – 2022 to create a scientific platform for scientists, researchers, industry representatives, academicians, Postdoctoral scholars, Ph.D. scholars, Postgraduate students, Undergraduate students and other stakeholder to meet, discuss, exchange the knowledge/ideas and to develop collaborations and cooperations.

  301. In this talk, hosted by the Baltimore Underground Science Space, Joelle Woolston (Intralytix, Inc.) provides a brief history of phages, an overview of their mechanisms of action, and a discussion of the many ways the power of phages is being harnessed and used today.

  302. Connor Brown on Twitter: "have a set of de novo assembled viral genomes from metagenome and trying to figure out who they are and their potential hosts. very few have BLAST hits against ncbi. any suggestions? #Bioinformatics #metagenomics #microbiome #phage #wastewater"

  303. Dear ISVM Members, We are pleased to announce the results of our 2022 ISVM Executive Board election. Thank you to 292 of you who participated in the election of the new Board members. The New ISVM Board members for 2023-2024 are listed below:

    ISVM Executive board members President: Zuzanna Drulis-Kawa (Poland) President-elect: Lone Brøndsted (Denmark) Vice-President: Hany Anany (Canada) Treasurer: Tracey Peters (USA) Secretary/Information Officer: Aleksandra Petrovic-Fabijan (Australia) Membership Secretary: Cedric Lood (Belgium) Web Developer: Cristina Moraru (Germany)

    ISVM Staff functions Industry outreach: Sandra Morales (Australia) Assistant Secretary: Milan Gerovac (Germany)

    This new Board will convene in January 2023 and will represent ISVM members through 2023-2024.

    — The ISVM Executive Board

  304. Viruses Journal is now accepting nominations for their 2022 Early Career Investigator Award. The prize will be awarded to two early-career investigators demonstrating excellence in virology, and will include an invitation to speak at the Viruses International Virology Conference in 2024.

  305. A kind reminder about the Africa Phage Forum Webinar which will be held online on Oct 26, 2022 2:00 PM in Brussels or 3:00 PM East Africa Time. The talk will cover the long and winding road from phage research, over phage production, to authorized phage applications in patients in Belgium. Save the date to learn about phage therapy in Belgium and celebrate the World Phage Week with us. Registration link

  306. World Phage Week 2022 Webinar Series: The Ibadan Bacteriophage Research Team is celebrating World Phage Week 2022 with a webinar series on October 28 (1-4 PM West African Time) and October 29 (9-11 AM West African Time).

    The theme will be “Emerging Prospects in Bacteriophage Use and Clinical Phage Therapy”. Come hear talks by Prof. Martha Clokie, Prof. Jon Iredell, Dr. Temitope Faleye, Dr. Atunga Nyachieo, and Ivy Mutai. 

    Register here!

  307. I'm very happy to share that our new project entitled "SUPPLY: SUperfast Photonic detection of Phage LYsis" has been granted ~1.3 Millions by the FNS-ANR in the last Lead Agency call. I'm very excited to start this four-year collaboration with great teams from EPFL (Romuald Houdré), CEA Grenoble (Emmanuel Hadji), and CNRS Grenoble (Marc Zelsmann)! — Gregory Resch via LinkedIn

  308. World Phage Week 2022 Webinar Series: The Ibadan Bacteriophage Research Team is celebrating World Phage Week 2022 with a webinar series on October 28 (1-4 PM West African Time) and October 29 (9-11 AM West African Time).

    The theme will be “Emerging Prospects in Bacteriophage Use and Clinical Phage Therapy”. Come hear talks by Prof. Martha Clokie, Prof. Jon Iredell, Dr. Temitope Faleye, Dr. Atunga Nyachieo, and Ivy Mutai. 

    Register here!

  309. Africa Phage Forum Webinar Oct 26, 2022 2:00 PM in Brussels: The famous phage researcher in Brussels Dr. Jean-Paul Pirnay has accepted to celebrate the World Phage Week with African phage researchers and collaborators through an online webinar.

    The talk will cover the long and winding road from phage research, over phage production, to authorized phage applications in patients in Belgium. Save the date to know everything about PHAGE THERAPY in Belgium.

    Register now

  310. Dear Phage Phans,

    We'd love to hear all your VoM Portugal stories— esp. since we couldn't go! Email or tweet us, and we'll post them here in Capsid! jessica@phage.directory / @phagedirectory — also send us pics!

    What was your favorite talk? What was one (biggest) thing you learned or took away? What did you love about VoM Portugal?

  311. Dear Phage Family,

    I have trouble isolating Listeria phages from environmental samples. I used the method from the article named 'Silage Collected from Dairy Farms Harbors an Abundance of Listeriaphages with Considerable Host Range and Genome Size Diversity' by Vongkamjan et al.

    Do you have any tips for isolating Listeria phages? I would be very glad if you send me tips. e-mail: irem.iskender@metu.edu.tr

    Thanks, İrem

  312. Genome Startup Day Fall 2022: Bacteria Breakthroughs is a virtual event on October 5th, 2:00-3:00 pm PST that will feature a fireside chat with John Eisen, PhD, UC Davis professor and renowned genomics and microbiology researcher, and Ivan Liachko, PhD, Founder and CEO for Phase Genomics, as well as a panel discussion with startup founders Jessica Sacher, PhD, of Phage Directory, Nathan Brown, PhD, of Parallel Health and Minmin (Mimi) Yen, PhD, of PhagePro.

  313. The 1st hybrid event co-organised by Phage-UK will be held in Oxford, UK on Friday 7th October 2022 from 17:30 to 20:00. 

    Very generously hosted by the #saidbusinessschool in Oxford, UK, co-organised with Will Battersby, film director, and Diane Shader Smith, mother of the late patient featured in the film. The in-person evening will start at 17:30 with the screening of Salt in My Soul, a powerful and touching film featuring Mallory, a patient with cystic fibrosis, who sadly could not be treated early enough with bacteriophages to survive an antibiotic-resistant super-bug.

    The screening will be followed by a panel discussion on bacteriophage therapy in the UK, shared live, online, from 19:15.

    If you would like to attend the event in person in Oxford at 17:30, kindly send an email to stephaniellesage@gmail.com directly.

    For those who are further away and would like to attend the event remotely, please register for the online event.

  314. The 1st hybrid event co-organised by Phage-UK will be held in Oxford, UK on Friday 7th October 2022 from 17:30 to 20:00. 

    Very generously hosted by the #saidbusinessschool in Oxford, UK, co-organised with Will Battersby, film director, and Diane Shader Smith, mother of the late patient featured in the film. The in-person evening will start at 17:30 with the screening of Salt in My Soul, a powerful and touching film featuring Mallory, a patient with cystic fibrosis, who sadly could not be treated early enough with bacteriophages to survive an antibiotic-resistant super-bug.

    The screening will be followed by a panel discussion on bacteriophage therapy in the UK, shared live, online, from 19:15.

    If you would like to attend the event in person in Oxford at 17:30, kindly send an email to stephaniellesage@gmail.com directly.

    For those who are further away and would like to attend the event remotely, please register for the online event.

  315. The 1st hybrid event co-organised by Phage-UK will be held in Oxford, UK on Friday 7th October 2022 from 17:30 to 20:00. 

    Very generously hosted by the #saidbusinessschool in Oxford, UK, co-organised with Will Battersby, film director, and Diane Shader Smith, mother of the late patient featured in the film. The in-person evening will start at 17:30 with the screening of Salt in My Soul, a powerful and touching film featuring Mallory, a patient with cystic fibrosis, who sadly could not be treated early enough with bacteriophages to survive an antibiotic-resistant super-bug.

    The screening will be followed by a panel discussion on bacteriophage therapy in the UK, shared live, online, from 19:15.

    If you would like to attend the event in person in Oxford at 17:30, kindly send an email to stephaniellesage@gmail.com directly.

    For those who are further away and would like to attend the event remotely, please register for the online event.

  316. Dear ISVM Members,

    We are happy to announce upcoming elections for the ISVM Executive Board:

    • Candidates' applications: deadline September 9th, 2022
    • Voting: September 16th-30th, 2022
    • Results: October 10th-15th, 2022
    • Transition period: October 16th, 2022 - January 15th, 2023
    • Changing of the board: January 15th, 2023

    We are now gathering the list of candidates to stand for election.

    As an Officer, you can help shape the future of ISVM, and we hope that you will step forward and express your interest in one of the positions.

    The positions that are opened in this round (2023/24) are:

    • President-Elect in 2023/2024 (preparation for becoming the next president in 2025/2026)
    • Vice-President (replacement of President in case of absence)
    • Treasurer (financial management & overview of the society)
    • Information Officer (reporting and communication)
    • Assistant Secretary (social media, newsletter; replacement of Information Officer in case of absence)
    • Industry Outreach (industry contacts & sponsorship)
    • Website Administrator (maintenance & design)
    • Membership Secretary (updating memberships and statistics)

    The election is open to all ISVM members.

    Please see http://www.isvm.org/about.html for more information on ISVM governance.

    Please contact Rob Lavigne (rob.lavigne@kuleuven.be) or Zuzanna Drulis-Kawa (zuzanna.drulis-kawa@uwr.edu.pl) for additional information.

    All candidates should complete the candidate registration form (members would have received it by email) and send to membership@ISVM.org BEFORE SEPTEMBER 9th 2022.

    Voting will be announced with an email that includes a link to the poll.

    Thanks for your continued support.

    The ISVM Board

  317. Dear ISVM Members,

    We are happy to announce upcoming elections for the ISVM Executive Board:

    • Candidates' applications: deadline September 9th, 2022
    • Voting: September 16th-30th, 2022
    • Results: October 10th-15th, 2022
    • Transition period: October 16th, 2022 - January 15th, 2023
    • Changing of the board: January 15th, 2023

    We are now gathering the list of candidates to stand for election.

    As an Officer, you can help shape the future of ISVM, and we hope that you will step forward and express your interest in one of the positions.

    The positions that are opened in this round (2023/24) are:

    • President-Elect in 2023/2024 (preparation for becoming the next president in 2025/2026)
    • Vice-President (replacement of President in case of absence)
    • Treasurer (financial management & overview of the society)
    • Information Officer (reporting and communication)
    • Assistant Secretary (social media, newsletter; replacement of Information Officer in case of absence)
    • Industry Outreach (industry contacts & sponsorship)
    • Website Administrator (maintenance & design)
    • Membership Secretary (updating memberships and statistics)

    The election is open to all ISVM members.

    Please see http://www.isvm.org/about.html for more information on ISVM governance.

    Please contact Rob Lavigne (rob.lavigne@kuleuven.be) or Zuzanna Drulis-Kawa (zuzanna.drulis-kawa@uwr.edu.pl) for additional information.

    All candidates should complete the candidate registration form (members would have received it by email) and send to membership@ISVM.org BEFORE SEPTEMBER 9th 2022.

    Voting will be announced with an email that includes a link to the poll.

    Thanks for your continued support.

    The ISVM Board

  318. News: The UK National Health Service (NHS) has hired its first clinical phage specialist! Read about the new role, accepted by Dr. Josh Jones, an infectious disease physician in Scotland who’s been treating patients with diabetic foot ulcer infections using phages prepared in Belgium by the Queen Astrid Military Hospital.

  319. Dear ISVM Members,

    We are happy to announce upcoming elections for the ISVM Executive Board:

    • Candidates' applications: deadline September 9th, 2022
    • Voting: September 16th-30th, 2022
    • Results: October 10th-15th, 2022
    • Transition period: October 16th, 2022 - January 15th, 2023
    • Changing of the board: January 15th, 2023

    We are now gathering the list of candidates to stand for election.

    As an Officer, you can help shape the future of ISVM, and we hope that you will step forward and express your interest in one of the positions.

    The positions that are opened in this round (2023/24) are:

    • President-Elect in 2023/2024 (preparation for becoming the next president in 2025/2026)
    • Vice-President (replacement of President in case of absence)
    • Treasurer (financial management & overview of the society)
    • Information Officer (reporting and communication)
    • Assistant Secretary (social media, newsletter; replacement of Information Officer in case of absence)
    • Industry Outreach (industry contacts & sponsorship)
    • Website Administrator (maintenance & design)
    • Membership Secretary (updating memberships and statistics)

    The election is open to all ISVM members.

    Please see http://www.isvm.org/about.html for more information on ISVM governance.

    Please contact Rob Lavigne (rob.lavigne@kuleuven.be) or Zuzanna Drulis-Kawa (zuzanna.drulis-kawa@uwr.edu.pl) for additional information.

    All candidates should complete the candidate registration form (members would have received it by email) and send to membership@ISVM.org BEFORE SEPTEMBER 9th 2022.

    Voting will be announced with an email that includes a link to the poll.

    Thanks for your continued support.

    The ISVM Board

  320. Welcome new Phage Directory members!

    • 10 phage professionals Adam Yang, Isabella Burdon, Yan Li, Louise Hock, Saieeda Fabia Ali, Karthik L, Joseph Ancla, Marcin Lubocki, Lyman Ngiam, Jinny Liu

    • 7 phage labs Nixon Lab, AZTI - Bacteriophage Research Group, Computational Phage Biodiscovery, SRM IST, University of Oklahoma, National Research Council Canada, Microbial Self-healing Research Group, UST BEATS Research Group

    • 3 phage organizations Creative Diagnostics, Institute of Phage, CreatiPhage Biotech

    The researcher, lab, organization and medical-professional signup forms accompanying this update are retired. Profile editing is currently by invitation. For questions, email hello@phage.directory.

  321. Ibadan Bacteriophage Research Team currently has an open call for abstracts, perspective pieces and article submission for the 2nd issue of our PHAMILIA Journal.

    Theme: Bacteriophages.

    Submissions are open to Undergraduate and Graduate students, Early-Career researchers, Research organizations, and Labs.

    Deadline: Sept 1, 2022.

    Submission: ibadanphageresearchteam@gmail.com

  322. Ibadan Bacteriophage Research Team currently has an open call for abstracts, perspective pieces and article submission for the 2nd issue of our PHAMILIA Journal.

    Theme: Bacteriophages.

    Submissions are open to Undergraduate and Graduate students, Early-Career researchers, Research organizations, and Labs.

    Deadline: Sept 1, 2022.

    Submission: ibadanphageresearchteam@gmail.com

  323. PHAGE Journal has selected Nikoline Olsen, Department of Environmental Science, Aarhus University, who co-authored A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential, for the Rosalind Franklin Society/Mary Ann Liebert Award in Science. Winners will receive $1,000, a personalized plaque, and a feature in the RFS Awards in Science book. 

    Congratulations Nikoline!!

  324. Jumbo phage nuclear shell assembles from one protein, chimallin (ChmA): Nature paper

    Nature paper (Laughlin et al.) reporting that the nucleus-like shell with which jumbo phages protect their replicating genomes from host defences assembles primarily from one protein, named chimallin (ChmA). Cryo-electron tomography in infected cells and cryo-EM of a minimal compartment show it self-assembles as a flexible sheet into closed micrometre-scale compartments.

  325. Never miss another phage event or deadline — you can now subscribe to Phage Calendar! Thanks to Sayde Perry, one of our star Phage Directory volunteers, for setting it up!

    Subscribe to the Google calendar here.

    If you use iCal, add it to your calendar with this .ics file.

    Currently we’re adding conferences and deadlines to register for phage-related events and beyond. If you have anything you’d like to add to the calendar, fill out this form — please include the name, date(s), URL and optional short description.

  326. Never miss another phage event or deadline — you can now subscribe to Phage Calendar! Thanks to Sayde Perry, one of our star Phage Directory volunteers, for setting it up!

    Subscribe to the Google calendar here.

    If you use iCal, add it to your calendar with this .ics file.

    Currently we’re adding conferences and deadlines to register for phage-related events and beyond. If you have anything you’d like to add to the calendar, fill out this form — please include the name, date(s), URL and optional short description.

  327. Never miss another phage event or deadline — you can now subscribe to Phage Calendar! Thanks to Sayde Perry, one of our star Phage Directory volunteers, for setting it up!

    Subscribe to the Google calendar here.

    If you use iCal, add it to your calendar with this .ics file.

    Currently we’re adding conferences and deadlines to register for phage-related events and beyond. If you have anything you’d like to add to the calendar, fill out this form — please include the name, date(s), URL and optional short description.

  328. Never miss another phage event or deadline — you can now subscribe to Phage Calendar! Thanks to Sayde Perry, one of our star Phage Directory volunteers, for setting it up!

    Subscribe to the Google calendar here.

    If you use iCal, add it to your calendar with this .ics file.

    Currently we’re adding conferences and deadlines to register for phage-related events and beyond. If you have anything you’d like to add to the calendar, fill out this form — please include the name, date(s), URL and optional short description.

  329. Mycovirus strain FgV1-SD4 eliminates deoxynivalenol (vomitoxin) production by the wheat scab fungus Fusarium graminearum

    A novel strain of Fusarium graminearum virus 1 (FgV1-SD4), a virus of the fungus rather than a bacteriophage, was the only mycovirus found in an F. graminearum isolate with significantly reduced virulence on wheat. No deoxynivalenol (DON, vomitoxin) was detected in seeds infected by that isolate versus about 18 ppm with the virus-free isolate; the authors say the strain or parts of its genome could be developed as a biocontrol agent against Fusarium head blight (Microorganisms, 2022).

  330. Hi everyone, after being virtual in 2021, our 2022 "Viral EcoGenomics and Applications" (VEGA) meeting is back in-person Oct 6 – 7, in the beautiful and sunny (although sometimes a bit foggy) Bay Area! (specifically on the Berkeley Lab campus).

    This will be a two-day meeting with talks and discussions about everything related to viruses of microbes, especially phages, of course everything 'omics (especially metagenomics and metatranscriptomics), but also genetic engineering, phage-base biotechs, and more!

  331. Hi everyone, after being virtual in 2021, our 2022 "Viral EcoGenomics and Applications" (VEGA) meeting is back in-person Oct 6 – 7, in the beautiful and sunny (although sometimes a bit foggy) Bay Area! (specifically on the Berkeley Lab campus).

    This will be a two-day meeting with talks and discussions about everything related to viruses of microbes, especially phages, of course everything 'omics (especially metagenomics and metatranscriptomics), but also genetic engineering, phage-base biotechs, and more!

  332. Hi everyone, after being virtual in 2021, our 2022 "Viral EcoGenomics and Applications" (VEGA) meeting is back in-person Oct 6 – 7, in the beautiful and sunny (although sometimes a bit foggy) Bay Area! (specifically on the Berkeley Lab campus).

    This will be a two-day meeting with talks and discussions about everything related to viruses of microbes, especially phages, of course everything 'omics (especially metagenomics and metatranscriptomics), but also genetic engineering, phage-base biotechs, and more!

  333. Drafting international guidelines for phage banks — initial brainstorming & organizational meeting

    We would like to gather a working group that will draft suggested guidelines over the coming months. This brainstorming meeting is open to anyone in person or on Zoom (though please do not post the Zoom link on social media for security reasons), including those who already have experience managing phage banks and those who would like to initiate a phage bank.

    When: Lunchtime (12:30 - 1:30) on Wednesday, July 20th (Portugal time) in Meeting Room #1 at Palacio Vila Flor (VoM2022 conference venue).

    Any questions, contact Tobi Nagel: tobi@phagesforglobalhealth.org.

  334. Jon Iredell (Director of Phage Australia) & Jessica Sacher (Phage Directory) will take part in an interactive ‘Meet the Researcher’ webinar hosted by the WIMR Foundation on phage therapy for AMR infections, and the work they’re doing at Phage Australia. This webinar is aimed at a public audience and all are welcome. Wed, 17 Aug 2022, 12.30pm–1.30pm, AEST.

  335. News: LyseNTech, a Korean phage company led by Heejoon Myung, was named a leading research institute by the Korean Ministry of Trade, Industry and Energy. LyseNTech aims to develop 'LNT103', a phage-derived endolysin, as an inhaled treatment through a nebulizer.

  336. Baylor College of Medicine is putting out a reverse phage alert. If you need phage for patients we have some purified, USP certified, sequenced and endotoxin quantified ready for use!

    • 2 phage cocktails for E. coli
    • 1 phage cocktail for S. maltophilia
    • 1 phage for P. aeruginosa.

    Physicians that are interested please contact tailorlabs@bcm.edu

  337. The Targeting Infectious Diseases Committee is hosting the 6th World Conference on Targeting Phage & Antibiotic Resistance November 24-25 2022 in Paris, France & online.

    The 2-day meeting will gather leading experts from around the world to explore the most recent studies in phage therapy including its pros and cons. The major aim is to cover the aspects of phage therapy today, especially with the emergence of phage resistance. It will also shed light on the new bacteriophage-based innovations and discoveries.

    Register by August 30 get the early bird offer.

  338. Tool: Pharokka, a dedicated fast phage annotation tool inspired by prokka. Pharokka is designed for users who want one-line, rapid, standarised and scalable phage annotations, much like prokka for prokaryotes.

  339. The Ibadan Bacteriophage Research Team (IBRT) is setting up a Twitter space event to discuss the interlink between biomedical research and programming languages via the team's Twitter handle. Topic: The Confluence: Programming languages and Biomedical Research Date: 01st July, 2022. Time: 6pm Nigerian time (5pm GMT). Venue: Twitter Spaces: @IbadanPhageTeam

  340. Webinar: Embracing the Australian Pathway to Phage Therapy in Canada: Connect Globally, Act Locally.

    Hosted by AMMI (Association of Medical Microbiology and Infectious Disease Canada)

    Tuesday, June 28th at 6pm - 7pm EDT Ottawa (Wednesday, June 29th at 8am - 9am AEST Sydney).

    Join the AMMI Canada Phage Therapy Working Group and invited speakers, Dr. Jon Iredell and team to illustrate how Phage Australia was created and developed research strengths and opportunities.

    Joining the discussion are Jessica Sacher and Jan Zheng from Phage Directory, a data partner with Phage Australia, on how anyone, anywhere can connect on phage therapy.

    A Q&A period will follow the presentation, tying in Canada’s unique capabilities.

    Register here.

  341. Webinar: Embracing the Australian Pathway to Phage Therapy in Canada: Connect Globally, Act Locally.

    Hosted by AMMI (Association of Medical Microbiology and Infectious Disease Canada)

    Tuesday, June 28th at 6pm - 7pm EDT Ottawa (Wednesday, June 29th at 8am - 9am AEST Sydney).

    Join the AMMI Canada Phage Therapy Working Group and invited speakers, Dr. Jon Iredell and team to illustrate how Phage Australia was created and developed research strengths and opportunities.

    Joining the discussion are Jessica Sacher and Jan Zheng from Phage Directory, a data partner with Phage Australia, on how anyone, anywhere can connect on phage therapy.

    A Q&A period will follow the presentation, tying in Canada’s unique capabilities.

    Register here.

  342. Introducing Phage Australia

    Phage Australia's new website is live at phageaustralia.org!

    Phage Australia is a national network of phage researchers and clinician scientists who aim to professionalise phage therapy as the third major intervention for infectious diseases.

    To do this, Phage Australia is building a national ecosystem that integrates phage biobanking, rapid phage diagnostics, phage manufacturing, and an adaptive clinical trial framework that fits the context of personalized phage therapy.

    Read more about Australia's phage therapy network!

  343. iVoM Season 2, hosted by ISVM, VoM 2022 and Phage Directory concluded recently with its 7th event.

    The recordings of all the events are now posted on the members page!

    The events spanned all aspects of viruses of microbes, and each feature 3 x 10 min talks followed by a combined Q&A and topic discussion.

    If you'd like to see these videos but didn't attend the series, you can still register here.

    Given that VoM 2022 is approaching next month, after a 2-year hiatus due to COVID, it's a great time to catch up on everything viruses-of-microbe!

    Thanks so much to all who joined and to our speakers and chairs!

  344. We warmly invite you to attend you to attend our 12th annual Oxford bacteriophage conference – the longest running phage conferences series in Europe – which will be held on 05-06 September 2022.

    We are committed to holding this conference as a ‘virtual-in-person’ hybrid event at our traditional venue of St Hilda’s College, Oxford, UK (COVID-19 situation permitting).

    Get involved in shaping the conference agenda, which will include most aspects of bacteriophage research and application in medicine, food and biotechnology. We welcome proposals for speakers and topics.

    We invite emerging researchers, including final-year doctoral students and early-/mid-career postdoctoral researchers/junior group leaders to play an active role in putting together ECR symposia on topics of their interest in the field, and to apply to present.

    Please email PhageOxford@gmail.com with any questions.

  345. iVoM Season 2, hosted by ISVM, VoM 2022 and Phage Directory concluded recently with its 7th event.

    The recordings of all the events are now posted on the members page!

    The events spanned all aspects of viruses of microbes, and each feature 3 x 10 min talks followed by a combined Q&A and topic discussion.

    If you'd like to see these videos but didn't attend the series, you can still register here.

    Given that VoM 2022 is approaching next month, after a 2-year hiatus due to COVID, it's a great time to catch up on everything viruses-of-microbe!

    Thanks so much to all who joined and to our speakers and chairs!

  346. We warmly invite you to attend you to attend our 12th annual Oxford bacteriophage conference – the longest running phage conferences series in Europe – which will be held on 05-06 September 2022.

    We are committed to holding this conference as a ‘virtual-in-person’ hybrid event at our traditional venue of St Hilda’s College, Oxford, UK (COVID-19 situation permitting).

    Get involved in shaping the conference agenda, which will include most aspects of bacteriophage research and application in medicine, food and biotechnology. We welcome proposals for speakers and topics.

    We invite emerging researchers, including final-year doctoral students and early-/mid-career postdoctoral researchers/junior group leaders to play an active role in putting together ECR symposia on topics of their interest in the field, and to apply to present.

    Please email PhageOxford@gmail.com with any questions.

  347. New NIAID request for applications: Partnerships for the Development of Novel Therapeutics To Combat Select Antibiotic Resistant Bacteria and Fungi (R01, Clinical Trial Not Allowed)

    The purpose of this Funding Opportunity Announcement (FOA) is to solicit research applications for milestone-driven projects focused on preclinical development of lead candidate therapeutics and related countermeasures against antibiotic resistant Acinetobacter baumannii, Pseudomonas aeruginosa, Enterobacteriaceae, or Candida auris. Applications must include a Product Development Strategy attachment. Substantive investment by industrial participants is highly encouraged.

  348. Register to attend The Phage Canada Virtual Symposia 2022! This virtual event will be held August 17th - 19th and aims to promote the exchange of ideas within the phage field, provide a forum for students and postdocs to present their research and foster interactions between phage researchers. Deadline to register is Aug 13.

  349. Register to attend The Phage Canada Virtual Symposia 2022! This virtual event will be held August 17th - 19th and aims to promote the exchange of ideas within the phage field, provide a forum for students and postdocs to present their research and foster interactions between phage researchers. Deadline to register is Aug 13.

  350. Register to attend The Phage Canada Virtual Symposia 2022! This virtual event will be held August 17th - 19th and aims to promote the exchange of ideas within the phage field, provide a forum for students and postdocs to present their research and foster interactions between phage researchers. Deadline to register is Aug 13.

  351. Register to attend The Phage Canada Virtual Symposia 2022! This virtual event will be held August 17th - 19th and aims to promote the exchange of ideas within the phage field, provide a forum for students and postdocs to present their research and foster interactions between phage researchers. Deadline to register is Aug 13.

  352. Deng's lab is delighted to announce the launch of a Special Issue in Viruses entitled "Phage–Host Interactions: From Communities to Single Particles". We would welcome original research and reviews exploring the interactions between phages and their bacterial hosts on community and single cells levels.

  353. iVoM Season 2, episode #7: Personalised phage therapy

    Date: 3 pm CET, Tuesday, May 3rd, 2022 *Note: 9am Eastern Daylight Time

    Register at https://ivom.phage.directory

    Talks Therapeutic phage monitoring in children

    • Dr. Ameneh Khatami, University of Sydney, Australia

    Quality Control of Phage APIs for human therapeutic use

    • Dr. Pieter-Jan Ceyssens, Sciensano, Belgium

    ...and meanwhile in the Israeli Phage Therapy Center (IPTC)

    • Prof. Ronen Hazan, Institute of Biomedical and Oral Research (IBOR), Israel

    Chairs

    • Dr. Matthias Fischer , Max Planck Institute for Medical Research, Heidelberg, Germany
    • Prof. Corina Brussaard , Royal Netherlands Institute for Sea Research, Netherlands
  354. Phage Canada is hosting our 2022 (Virtual) Symposia, August 17-20th. Over three half-days, we will feature (I) Undergraduate Education & Research, (II) Graduate & Post Graduate Research, and (III) Career Opportunities in Phage Research. The emphasis is on showcasing the fantastic research being done by trainees in Canada.

    Attendance is open to everyone, and is free - although capacity limits may require prioritizing those with Canadian research affiliations.

    For more information, check out our website: https://event.fourwaves.com/phage2022

  355. This registration is for the virtual portion of the 2022 Viromics Workshop held at OSU, May 11-13. On the first day (May 11), there will be a mini-symposium, consisting of four talks from our teaching staff. These will be broadcasted live via zoom. It is for this session only that this registration form is for. Closer to the date, we will send the zoom invite.

  356. The Ibadan Bacteriophage Research Team (IBRT) is setting up a Twitter space event to discuss Undergraduate Phage Research in Africa via the team's Twitter handle.

    Topic: Undergraduate Phage Research in Africa: Success stories and Challenges

    Date: 06 May, 2022

    Time: 6pm Nigerian time (5pm GMT)

    Venue: Twitter Space @IbadanPhageTeam

  357. Phage researchers came together in Nairobi recently for a symposium entitled the "Status of Bacteriophage Research in Kenya". This exciting event — the first national phage meeting in Africa — was co-hosted by the Kenya Medical Research Institute and the Institute of Primate Research, both headquartered in Nairobi.

    Organizers and attendees included many former participants of the training workshops that Phages for Global Health (PGH) has delivered over the past 5 years in East Africa, and the president of PGH, Dr. Tobi Nagel, gave a keynote address virtually from the US.

    A major goal of the Symposium was to strategize about how a centralized collection of phages — called a phage bank — might be established and utilized in Kenya to address the nation's antibiotic resistance crisis. This idea was the focus of a recent scientific article published by PGH and colleagues.

  358. iVoM Season 2, episode #6: Models for Viral Action. Date: 6 pm CET, April 12th, 2022. Register at https://ivom.phage.directory

    Talks

    • Modeling the Ecological and Therapeutic Impacts of Bacteriophage - an Imperfect Predator, by Prof. Joshua Weitz, Georgia Tech, USA
    • Why are there so many short prophages? The genetic repertoire of active and cryptic prophage sequences, by Prof. Lindi Wahl, Western University, Canada
    • Lord of the Broken Rings: how ATPase ring motors drive genome packaging in dsDNA viruses, by Dr. Marc Morais, Univ. of Texas Medical Branch (UTMB Health), USA

    Chairs

    • Dr. Matthias Fischer , Max Planck Institute for Medical Research, Heidelberg, Germany
    • Prof. Corina Brussaard , Royal Netherlands Institute for Sea Research, Netherlands
  359. iVoM Season 2, episode #6: Models for Viral Action. Date: 6 pm CET, April 12th, 2022. Register at https://ivom.phage.directory

    Talks

    • Modeling the Ecological and Therapeutic Impacts of Bacteriophage - an Imperfect Predator, by Prof. Joshua Weitz, Georgia Tech, USA
    • Why are there so many short prophages? The genetic repertoire of active and cryptic prophage sequences, by Prof. Lindi Wahl, Western University, Canada
    • Lord of the Broken Rings: how ATPase ring motors drive genome packaging in dsDNA viruses, by Dr. Marc Morais, Univ. of Texas Medical Branch (UTMB Health), USA

    Chairs

    • Dr. Matthias Fischer , Max Planck Institute for Medical Research, Heidelberg, Germany
    • Prof. Corina Brussaard , Royal Netherlands Institute for Sea Research, Netherlands
  360. Engineering selectivity of Cutibacterium acnes phages by epigenetic imprinting

    Researchers at Universitat Pompeu Fabra analysed the methylomes of six Cutibacterium acnes strains and showed that the killing specificity of phage PAD20 increases when its DNA acquires methylation from a methylation-competent strain. Phages propagated in restriction-modification-deficient strains selectively killed R-M deficient, acne-prone clades while probiotic clades stayed resistant.

  361. PHAGE GENOME ANNOTATION TWO-DAY VIRTUAL WORKSHOP A two-day course that will cover the processes of phage genome assembly, annotation and introduction to comparative phage genome analysis. Solutions to common phage genome assembly problems will be presented, through worked examples. Attendees can bring their own phage genomes or raw reads to assemble. When: 25-26 April 2022, time TBA Where: Zoom Instructor: Dr Andy Millard, University of Leicester

  362. Phages 2022 Oxford - 12th International Conference Dates: 05-06 September 2022 Email: PhageOxford@gmail.com Twitter: @PhageOxford; Hashtag: #PhgOx22

    We warmly invite you to attend you to attend our 12th annual Oxford bacteriophage conference – the longest running phage conferences series in Europe. We are committed to holding this conference as a ‘virtual-in-person’ hybrid event at our traditional venue of St Hilda’s College, Oxford, UK (COVID-19 situation permitting).

    Get involved in shaping the conference agenda: The conference agenda will include most aspects of bacteriophage research and application in medicine, food and biotechnology.

    We welcome proposals for: • keynote and other speakers • agenda topics • an emerging ‘phage-ologist’ award

    Registration will open soon. In the meantime, please send any queries to PhageOxford@gmail.com. We look forward to seeing you in Oxford in September!

  363. Hi all! I am a student at a Data Analysis school in France ("OpenClassrooms with ENSAE-ENSAI") and we have the possibility to do a free project (has to put to use stats/data methods). I am interested in doing something related to phages. I am not familiar with open source biology databases and not confident defining a problem to attempt to solve. I was wondering if someone might be able to help me with that? I'll quickly mention I recently passed a "molecular biology : transcription" EdX course, my Python >> R skills, contact me at tomsadigh [at] protonmail [dot] com. — Thomas Sadigh Rezvani

  364. iVoM Season 2, episode #5: Environmental impact of virus-host interactions Date: 2 pm CET, Tuesday, March 15th, 2022 Register at https://ivom.phage.directoryy

    Talks Coupling metagenomics to correlative microscopy for identification of novel viruses in the deep biosphere

    • Prof. Alexander Probst, University of Duisburg-Essen, Germany

    From phage to shark: microbial and macrobial predation govern state transitions on coral reefs

    • Dr. Cynthia Silveira, International Center for Genetic Engineering and Biotechnology (ICGEB)

    Harnessing virus for alleviating plant stress

    • Dr. Neeti Sanan-Mishra, International Center for Genetic Engineering and Biotechnology (ICGEB)

    Chairs

    • Dr. Matthias Fischer , Max Planck Institute for Medical Research, Heidelberg, Germany
    • Prof. Corina Brussaard , Royal Netherlands Institute for Sea Research, Netherlands
  365. iVoM Season 2, episode #5: Environmental impact of virus-host interactions Date: 2 pm CET, Tuesday, March 15th, 2022 Register at https://ivom.phage.directoryy

    Talks Coupling metagenomics to correlative microscopy for identification of novel viruses in the deep biosphere

    • Prof. Alexander Probst, University of Duisburg-Essen, Germany

    From phage to shark: microbial and macrobial predation govern state transitions on coral reefs

    • Dr. Cynthia Silveira, International Center for Genetic Engineering and Biotechnology (ICGEB)

    Harnessing virus for alleviating plant stress

    • Dr. Neeti Sanan-Mishra, International Center for Genetic Engineering and Biotechnology (ICGEB)

    Chairs

    • Dr. Matthias Fischer , Max Planck Institute for Medical Research, Heidelberg, Germany
    • Prof. Corina Brussaard , Royal Netherlands Institute for Sea Research, Netherlands
  366. Want an update on the current state of phage therapy in Australia? Get your bite-sized fix with #PhageBites! The Australian Society for Microbiology’s Bacteriophage SIG online symposium is March 1st – register here to hear from PhD/ECR speakers @_reneenicole, @RRocapinilla, @KatharineMuscat & @NandoGordillo. Plus a phage expert panel @Iredell_Lab, @JeremyJBarr & Dr. Sandra Morales!

  367. Join us for the next rendition of iVoM Season 2!

    iVoM2 #4: Endless virus diversity most beautiful

    Date: 6 pm CET, Tuesday, February 22nd, 2022

    Fungal and oomycete viruses with persistent lifestyles and unprecedented genome organizations Dr. Eeva Vainio Natural Resources Institute Finland (Luke)

    Diversity of Giant Viruses Prof. Frank Aylward Department of Biological Sciences, Virginia Tech, Blacksburg, VA

    Revealing the viruses in the most abundant animals on Earth Prof. Curtis Suttle Department of Earth, Ocean and Atmospheric Sciences, UBC

    Chairs Dr. Matthias Fischer Max Planck Institute for Medical Research, Heidelberg, Germany

    Prof. Corina Brussaard Royal Netherlands Institute for Sea Research, Netherlands

  368. Join us for the next rendition of iVoM Season 2!

    iVoM2 #4: Endless virus diversity most beautiful

    Date: 6 pm CET, Tuesday, February 22nd, 2022

    Fungal and oomycete viruses with persistent lifestyles and unprecedented genome organizations Dr. Eeva Vainio Natural Resources Institute Finland (Luke)

    Diversity of Giant Viruses Prof. Frank Aylward Department of Biological Sciences, Virginia Tech, Blacksburg, VA

    Revealing the viruses in the most abundant animals on Earth Prof. Curtis Suttle Department of Earth, Ocean and Atmospheric Sciences, UBC

    Chairs Dr. Matthias Fischer Max Planck Institute for Medical Research, Heidelberg, Germany

    Prof. Corina Brussaard Royal Netherlands Institute for Sea Research, Netherlands

  369. Structure-guided design of bacteriophage Qβ mutants as next-generation carriers for conjugate vaccines (ACS Chemical Biology)

    Study in ACS Chemical Biology designing structure-guided mutants of bacteriophage Qβ (mQβ) as carriers for conjugate vaccines. Conjugated to tumour-associated carbohydrate antigens, mQβ elicited strong anti-TACA IgG with lower anti-carrier antibody levels than wild-type Qβ; in a mouse breast cancer therapeutic model 80% of immunised mice were tumour-free while all unimmunised mice succumbed within 12 days. The mQβ conjugate also induced IgG against SARS-CoV-2 peptide antigens.

  370. The first ESGNTA Online Course titled: “Personalised Phage Therapy: Basic Principles of Monitoring and Treatment”, will take place virtually on the 7-10th of June 2022.

    It will include four sessions with cutting-edge scientific talks in the field of personalised phage therapy, including (1) therapeutic monitoring, (2) immune response to bacteriophages, (3) formulation and administration of bacteriophages for therapy, and (4) current state and prospects of oral phage therapy.

    Register here by June 1 2022.

    €50 for ESCMID members and €100 for non-members

  371. The first ESGNTA Online Course titled: “Personalised Phage Therapy: Basic Principles of Monitoring and Treatment”, will take place virtually on the 7-10th of June 2022.

    It will include four sessions with cutting-edge scientific talks in the field of personalised phage therapy, including (1) therapeutic monitoring, (2) immune response to bacteriophages, (3) formulation and administration of bacteriophages for therapy, and (4) current state and prospects of oral phage therapy.

    Register here by June 1 2022.

    €50 for ESCMID members and €100 for non-members

  372. The first ESGNTA Online Course titled: “Personalised Phage Therapy: Basic Principles of Monitoring and Treatment”, will take place virtually on the 7-10th of June 2022.

    It will include four sessions with cutting-edge scientific talks in the field of personalised phage therapy, including (1) therapeutic monitoring, (2) immune response to bacteriophages, (3) formulation and administration of bacteriophages for therapy, and (4) current state and prospects of oral phage therapy.

    Register here by June 1 2022.

    €50 for ESCMID members and €100 for non-members

  373. Hello! We are working on a Phage engineering project in Lisa Morici, PhD’s lab at Tulane University. We are looking for any sequenced or unsequenced phage for ATCC 19606 and 17978 (Lytic preferred) or any other sequenced phage for Acinetobacter baumannii (w/Bacteria) that anyone is willing to share with us. Thanks! Please contact me at mfolse1@tulane.edu.

  374. Viruses of Microbes 2022 (taking place in-person in Guimarães, Portugal this July!) registration and abstract submission are open!

    The conference is targeted to a wide-ranging audience, interested in both the fundamental and applied aspects of virus exploitation, and is thus organized into the following topics:

    • Ecology and evolution of microbial viruses
    • Virus structures and function
    • Virus-host interaction: overcoming cell barriers
    • Virus-host interaction: molecular mechanisms
    • Virus-host interaction: host defence and viral evasion mechanisms
    • Agro-food, veterinary and environmental biotechnology applications
    • Biotechnology applications in health care
    • Current state and latest developments of phage therapy

    This is the flagship conference of the ISVM — definitely not to be missed!

  375. Rainn Wilson (Dwight from ‘The Office’) is hosting a phage therapy event!!

    When: Tuesday Feb 8th at 4pm PT / 7pm ET. This is to discuss the recent documentary, Salt in My Soul, which follows Mallory Smith’s life with cystic fibrosis and attempts to get phage therapy.

    Panelists will be Will Battersby, director of the film, as well as Mallory’s mother Diane Shader Smith, brother Micah Smith, and friend Maya Humes, as well as phage therapy scientist Ben Chan, Steffanie Strathdee, and Gunnar Esiason, a cystic fibrosis patient advocate.

    Register here for this free online event!.

    And if you haven’t seen the film yet, watch it here!

  376. ESGNTA is a new study group of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) dedicated to non-traditional antimicrobials including phage.

    People interested in joining the Executive Committee (2022-24 term) can now be nominated. ESGNTA members are eligible and can propose nominations, can nominate other members or support members that have been already nominated.

    Nomination phase: 10/01/2022 - 14/02/2022 Election phase: 03/03/2022 - 17/03/2022 New Executive Committee takes office at ECCMID 2022.

    More info in the ISVM newsletter.

  377. The first ESGNTA Online Course titled: “Personalised Phage Therapy: Basic Principles of Monitoring and Treatment”, will take place virtually on the 7-10th of June 2022.

    It will include four sessions with cutting-edge scientific talks in the field of personalised phage therapy, including (1) therapeutic monitoring, (2) immune response to bacteriophages, (3) formulation and administration of bacteriophages for therapy, and (4) current state and prospects of oral phage therapy.

    Register here by June 1 2022.

    €50 for ESCMID members and €100 for non-members

  378. New phage therapy center: The ‘Center for Phage Biology and Therapy at Yale’ has been formally launched at Yale University to advance phage biology understanding, translate advancements into the clinic and provide training & education. Check out their new website to learn more!

  379. Thanks to all who came out to the first iVoM Season 2 event of 2022!

    Next: Feb 2 from 2-3 PM CET Topic: Phage application in the One Health approach. Speakers: Dr. Cath Rees, Prof. Mariana Piuri, Prof. Lone Brøndsted.

    If you want to join this series, which will run through May, please register at https://ivom.phage.directory — as many of you know, ISVM is asking for a small contribution from senior scientists and industry for access to this series, which will support ISVM’s activities now and in the future.

    Phage Directory is a proud partner of this event, and so are the local organizers for VoM 2022, the upcoming in-person/hybrid conference in Portugal July 18-22!

  380. Thanks to all who came out to the first iVoM Season 2 event of 2022!

    Next: Feb 2 from 2-3 PM CET Topic: Phage application in the One Health approach. Speakers: Dr. Cath Rees, Prof. Mariana Piuri, Prof. Lone Brøndsted.

    If you want to join this series, which will run through May, please register at https://ivom.phage.directory — as many of you know, ISVM is asking for a small contribution from senior scientists and industry for access to this series, which will support ISVM’s activities now and in the future.

    Phage Directory is a proud partner of this event, and so are the local organizers for VoM 2022, the upcoming in-person/hybrid conference in Portugal July 18-22!

  381. IPATH invites the phage therapy community to the virtual screening and discussion event for the new documentary, Salt in My Soul. This film recounts the struggles and feelings of Mallory Smith, who lost her battle with cystic fibrosis and a rare superbug infection in November 2017. (Her story was the inspiration for Phage Directory!)

    You'll get a link Jan 25th to stream the film at your convenience, before the panel event on February 1st (4:00 PM - 5:00 PM PST) on Zoom.

    The panel will feature Diane Shader Smith, the film’s director Will Battersby, Dr. Doug Conrad, and IPATH’s Drs. Robert Schooley, Saima Aslam, and David Pride, moderated by IPATH Co-Director, Dr. Steffanie Strathdee.

  382. Paper: Lambda phage ‘counts’ the number of coinfecting viruses and then uses this to assess the abundance of potential hosts and decide whether to become dormant. This single-cell tool illuminates how! — Tianyou Yao et al.

  383. Thanks to all who came out to the first iVoM Season 2 event of 2022!

    Next: Feb 2 from 2-3 PM CET Topic: Phage application in the One Health approach. Speakers: Dr. Cath Rees, Prof. Mariana Piuri, Prof. Lone Brøndsted.

    If you want to join this series, which will run through May, please register at https://ivom.phage.directory — as many of you know, ISVM is asking for a small contribution from senior scientists and industry for access to this series, which will support ISVM’s activities now and in the future.

    Phage Directory is a proud partner of this event, and so are the local organizers for VoM 2022, the upcoming in-person/hybrid conference in Portugal July 18-22!

  384. IPATH invites the phage therapy community to the virtual screening and discussion event for the new documentary, Salt in My Soul. This film recounts the struggles and feelings of Mallory Smith, who lost her battle with cystic fibrosis and a rare superbug infection in November 2017. (Her story was the inspiration for Phage Directory!)

    You'll get a link Jan 25th to stream the film at your convenience, before the panel event on February 1st (4:00 PM - 5:00 PM PST) on Zoom.

    The panel will feature Diane Shader Smith, the film’s director Will Battersby, Dr. Doug Conrad, and IPATH’s Drs. Robert Schooley, Saima Aslam, and David Pride, moderated by IPATH Co-Director, Dr. Steffanie Strathdee.

  385. Phages for Global Health invites scientists from anywhere in Africa, whether or not you have previously attended our workshops, to fill out this survey about your ongoing phage work or any aspirations for future phage-related activities.

    PGH will use this information to both understand how phage work has continued to evolve on the continent and to connect African phage researchers with international collaborators who can help with activities such as DNA sequencing or microscopic (TEM) analysis of phages, as well as provide mentoring on specific topics.

  386. Happy New Year from PHAGE Journal!

    To celebrate the new year, you can access the papers in PHAGE Journal's new "Special Issue on Phage Informatics and AI" for free for a limited time!

    Included in this issue:

  387. I would like to introduce Phage Commander, a new genome annotation tool that runs a genome through multiple gene calling programs simultaneously and outputs the results to a single spreadsheet. Phage Commander includes the following programs: Glimmer, GeneMark, Prodigal, RAST, MetaGene, and Aragorn. Phage Commander is super easy to install and use, and runs on Mac, Windows and Linux. Download here. Read the paper here — Contributed by Philippos Tsourkas

  388. The Africa Phage Forum is excited to announce the APF 2021 Symposium, taking place next week!

    Theme: Opportunities in One Health for Phage Research in Africa.

    Speakers include Dr. Emmanuel Nnadi, Dr. Evelien Adriaenssens, Dr. Janet Nale, Dr. Jeroen Wagemans, Prof. Paul Turner, Prof. Martha Clokie, Dr. Tobi Nagel, Dr. Jonas D Van Belleghem, and Dr. Jesca Nakavuma.

    Talks will run Monday Dec 13, Thursday Dec 14, and Friday Dec 17.

    All past attendees of APF have been invited; please register here to receive the join links if you haven't already.

  389. Evelien Adriaenssens has asked a question "What is your favourite genome comparison visualisation tool? EasyFig and Mauve don't work for me anymore after updating OS. Clinker is great, but doesn't compare the nucleotide sequence. BRIG works, but I don't want a circle". If you have any suggestions, head over to her Twitter thread and leave a comment!

  390. JPIAMR (Joint Programming Initiative on Antimicrobial Resistance) has awarded funding to multiple new phage-related projects in the One Health space! Funded phage projects include:

    • Use of phage applications to combat MRSA at the sow-piglet interface to reduce exposure of staff and contamination of the environment (PHAGE-EX);
    • Phage treatment and wetland technology as intervention strategy to prevent dissemination of antibiotic resistance in surface waters (PhageLand);
    • Phage therapy to reduce AMR Enterobacteria spread from a One Health perspective (Phage-Stop-AMR)!

    Congratulations to all the awardees!

  391. Many of us are excited for the upcoming Viruses of Microbes (VoM) conference finally taking place summer 2022 in Portugal (after being rescheduled from 2020). In collaboration, the International Society for Viruses of Microorganisms (ISVM), Phage Directory, and the organizers of VoM 2022 are excited to announce Season 2 of iVoM, a series of online lectures from prominent researchers studying viruses of microbes. Seven sessions will run from December 2021 to May 2022, in the lead-up to the exciting in-person version of VoM, July 2022.

    The first iVoM2 event will be Dec. 8th at 12:00 PM (noon) CET, under the theme "Control on Viral Action: regulation of viral activity by other viruses and mobile genetic elements".

    It will feature talks by:

    • Dr. Aude Bernheim, INSERM, France: "Systematic and quantitative view of the antiviral arsenal of prokaryotes"
    • Prof. Martin Polz, Univ. of Vienna, Austria: "The dynamics of bacterial innate defenses against phage"
    • Dr. Matthias Fischer, MPI for Medical Research, Germany: "The sleeper within - how endogenous virophages may defend protists against giant viruses"

    Chair:

    • Prof. Corina Brussaard (Royal Netherlands Institute for Sea Research, Netherlands)
    • Dr. Alex Petrovic Fabijan (Westmead Institue for Medical Research and University of Sydney, Australia)

    Register at https://ivom.phage.directory!

    The rest of iVoM Season 2 will take place in 2022 and consist of six additional sessions (#2-7) on the topics of:

    1. Raiders of the third domain
    2. Phage application in the One Health approach
    3. Endless virus diversity most beautiful
    4. Environmental impact of virus-host interactions
    5. Models for viral action
    6. Personalised phage therapy
  392. Many of us are excited for the upcoming Viruses of Microbes (VoM) conference finally taking place summer 2022 in Portugal (after being rescheduled from 2020). In collaboration, the International Society for Viruses of Microorganisms (ISVM), Phage Directory, and the organizers of VoM 2022 are excited to announce Season 2 of iVoM, a series of online lectures from prominent researchers studying viruses of microbes. Seven sessions will run from December 2021 to May 2022, in the lead-up to the exciting in-person version of VoM, July 2022.

    The first iVoM2 event will be Dec. 8th at 12:00 PM (noon) CET, under the theme "Control on Viral Action: regulation of viral activity by other viruses and mobile genetic elements".

    It will feature talks by:

    • Dr. Aude Bernheim, INSERM, France: "Systematic and quantitative view of the antiviral arsenal of prokaryotes"
    • Prof. Martin Polz, Univ. of Vienna, Austria: "The dynamics of bacterial innate defenses against phage"
    • Dr. Matthias Fischer, MPI for Medical Research, Germany: "The sleeper within - how endogenous virophages may defend protists against giant viruses"

    Chair:

    • Prof. Corina Brussaard (Royal Netherlands Institute for Sea Research, Netherlands)
    • Dr. Alex Petrovic Fabijan (Westmead Institue for Medical Research and University of Sydney, Australia)

    Register at https://ivom.phage.directory!

    The rest of iVoM Season 2 will take place in 2022 and consist of six additional sessions (#2-7) on the topics of:

    1. Raiders of the third domain
    2. Phage application in the One Health approach
    3. Endless virus diversity most beautiful
    4. Environmental impact of virus-host interactions
    5. Models for viral action
    6. Personalised phage therapy
  393. Many of us are excited for the upcoming Viruses of Microbes (VoM) conference finally taking place summer 2022 in Portugal (after being rescheduled from 2020). In collaboration, the International Society for Viruses of Microorganisms (ISVM), Phage Directory, and the organizers of VoM 2022 are excited to announce Season 2 of iVoM, a series of online lectures from prominent researchers studying viruses of microbes. Seven sessions will run from December 2021 to May 2022, in the lead-up to the exciting in-person version of VoM, July 2022.

    The first iVoM2 event will be Dec. 8th at 12:00 PM (noon) CET, under the theme "Control on Viral Action: regulation of viral activity by other viruses and mobile genetic elements".

    It will feature talks by:

    • Dr. Aude Bernheim, INSERM, France: "Systematic and quantitative view of the antiviral arsenal of prokaryotes"
    • Prof. Martin Polz, Univ. of Vienna, Austria: "The dynamics of bacterial innate defenses against phage"
    • Dr. Matthias Fischer, MPI for Medical Research, Germany: "The sleeper within - how endogenous virophages may defend protists against giant viruses"

    Chair:

    • Prof. Corina Brussaard (Royal Netherlands Institute for Sea Research, Netherlands)
    • Dr. Alex Petrovic Fabijan (Westmead Institue for Medical Research and University of Sydney, Australia)

    Register at https://ivom.phage.directory!

    The rest of iVoM Season 2 will take place in 2022 and consist of six additional sessions (#2-7) on the topics of:

    1. Raiders of the third domain
    2. Phage application in the One Health approach
    3. Endless virus diversity most beautiful
    4. Environmental impact of virus-host interactions
    5. Models for viral action
    6. Personalised phage therapy
  394. The Ibadan Bacteriophage Research Team, an undergraduate SEA-PHAGES team at the University of Ibadan, Nigeria announces the launch of its first journal issue PHAMILIA. The first undergraduate research journal in bacteriophage biology showcases student and faculty team members, as well as publications on diverse subjects of bacteriophage biology from the team and other guest writers.

  395. Stephanie Lynch will chair the next Phage Phun session, which will be Thursday Nov 25 at 10AM AEST (Wed Nov 24, 3PM Pacific time). Join us for this informal virtual networking session by registering here. (If you’re already signed up for the PHAVES series or a past Phage Phun, no need to register again; we’ll send you the link closer to the date).

  396. Many of us are excited for the upcoming Viruses of Microbes (VoM) 2022, the conference finally taking place this summer in Portugal - after being rescheduled from 2020. In collaboration, the International Society for Viruses of Microorganisms (ISVM), Phage Directory, and the organizers of VoM 2022 are excited to announce Season 2 of iVoM, a series of online lectures from prominent researchers studying viruses of microbes. These events will run monthly from December to June, in the lead-up to the in-person version of VoM, which will still take place July 2022.

    The first iVoM2 event will be Dec. 8th at 12:00 PM (noon) CET, under the theme "Control of Viral Action - regulation of viral activity by other viruses and mobile genetic elements*

    It will feature talks by:

    • Dr. Aude Bernheim, INSERM, France: "Systematic and quantitative view of the antiviral arsenal of prokaryotes"
    • Dr. Matthias Fischer, MPI for Medical Research, Germany: "The sleeper within - how endogenous virophages may defend protists against giant viruses"

    Chairs:

    • Corina Brussaard (Royal Netherlands Institute for Sea Research, Netherlands)
    • Shawna McCallin (Balgrist University Hospital, University of Zürich, Switzerland)

    The rest of iVoM Season 2 will start in January and consist of six sessions, on per month, on the topics of:

    1. Raiders of the third domain
    2. Phage application in the One Health approach
    3. Endless virus diversity most beautiful
    4. Environmental impact of virus-host interactions
    5. Models for viral action
    6. Personalised phage therapy

    More details (and registration link) coming soon! For now, feel free to check out the presentations from iVoM Season 1, which ran 2020-2021.

  397. The next Phage Phun is Wed, Nov 24 at 9AM Pacific! Phage Phun: informal, self-serve Zoom breakout rooms, where you can hop between topic-based rooms and meet new phage phriends! At Evergreen we had rooms like ‘Catching up with phriends’, ‘Phage Therapy’, ‘Troubleshooting: bring a problem, get a solution’, ‘Phage in the Phield’ and more. Register here!

  398. Hany Anany, Antonet Svircev and Eeva Vainio and I (Paul Hyman) are editing a research topic in Frontiers in Microbiology titled “Beyond humans - virus therapy for pathogens of animals and plants” to highlight work with other systems besides human phage therapy. It doesn’t have to be with phages – if a virus is used to treat a pathogen that isn’t infecting a human being, we’re interested in hearing from you. Questions? Please e-mail me at phyman@ashland.edu

  399. Thank you to everyone who participated in our very first #WorldPhageWeek #scicomm challenge! Overall we had just over 70 individual phage researchers participate, and it was great seeing all the phage posts on Twitter! Thank you again to Dr. Ellie Jameson who kindly agreed to create a custom phage art piece for the winner! We spun a wheel to decide the winner, and the winner is... Karen Adler!!! Congratulations Karen!

  400. For PHAVES #24 next week, veterinarian Dr. Whitney Greene & phage researcher Prof. Julianne Grose will give a talk entitled 'Phage Researcher & Veterinarian Perspective: Phage therapy to combat a shell infection in a sea turtle' on November 10 at 3 PM EST! Register here! (If you're already signed up for the PHAVES series, no need to register again; we'll send you the link closer to the date).

  401. Conventional homology-based comparative genomic analyses can only do so much in extracting information from databases. We used phages to test our comparative genomics tool (CALANGO) that considers annotation terms besides sequence data. By focusing on E. coli genomes and prophages, we found that pathogenic E. coli have more prophages than non-pathogenic ones, and genes of viral origin are associated to prophages. Genes annotated as virulence factors are also associated to prophage density, but several are not coded by the prophages themselves. We also found genes negatively associated to prophage presence.

    Read our preprint here and try the CALANGO package on your organisms of choice. We are looking forward for your findings, feedback and criticism! I (@Gabriel_MFA) am only a non-coding contributor, so please look for the masterminds behind the project for more info: @_fcampelo and @chicao_lobo.

  402. What an INCREDIBLE turnout on Twitter for #WorldPhageWeek this week! Thanks so much to all who have participated in our daily prompts — we've learned so much about the phage community, how people got into phages, what their favourite phage papers are, favourite phage phacts, burning questions they wish they knew the answer to, etc.! If you haven't been following, head to Twitter and search the hashtag #WorldPhageWeek, and prepare to find a ton of new super interesting phage people to follow!

    This of course has been a contest (crafted straight from the mind of Stephanie Lynch!), and the winner (random draw among those who participated) will receive personalized phage art from the talented phage professor/artist @Ellie__Jameson... winners to be announced soon!

  403. David Picton (Durham University, UK) and colleagues published a new paper in Nucleic Acids Research showing the phage defence island of a multidrug resistant plasmid uses both BREX and type IV restriction for complementary protection from viruses. The authors also present the first structure of a GmrSD-family type IV restriction enzyme and acknowledge the work of 97 undergrads in isolating all 30 phages used in the study! Also check out Tim Blower's thread about the work on Twitter!

  404. We now know megaphages (phages with extremely large genomes) are ubiquitous, but before now, no complete marine megaphage had been identified. Slawomir Michniewski (University of Warwick) and colleagues published a new paper in ISME Communications showing a new family of “megaphages” abundant in the marine environment. They assembled >900 draft viral genomes from English Channel water, one of which encoded a novel 650-kB megaphage, making it one of the largest phage genomes assembled to date.

  405. The EMBO podcast has released a new episode entitled 'the enemy of my enemy: the return of phage therapy'. This episode interviews Jonathan Iredell and Ameneh Khatami about their recent publication in EMBO Molecular Medicine on the seven-year-old girl who received phage therapy for a multidrug resistant Pseudomonas strain. Jessica Sacher also features in this episode, talking about how Phage Directory helped source phages for this case.

  406. Hello, I'm Asher (amehr22@dths.org)! I’m a high school senior in Los Angeles pursuing a project on phage therapy, and I’ve hit a massive roadblock in trying to order phages. I’m reaching out, hoping someone has info on how I can get them. I’m hoping to examine the efficacy of phage therapy in treating cystic fibrosis in _C. elegans (P. aeruginosa PAO1-GFP). From my prelim lit review, it looks like the following phages as a cocktail show effectiveness: Pseudomonas phages vB_PaeP_PYO2, vB_PaeP_DEV, vB_PaeM_E215, and vB_PaeM_E217. Does anyone have info about how to order one or all of them?

  407. Applications are now open for the Southeast Asia Virtual Phage Workshop which will be hosted in March 2022 by the NGO Phages for Global Health.

    Topics and activities will include:

    • Learning essential aspects of phage biology
    • Exploring experimental techniques for isolating and characterizing phages
    • Understanding antibacterial applications of phages in people, animals and crops
    • Expanding the international network of phage scientists

    Up to 50 scientists will be selected through a competitive application process.

  408. Viruses modulate carbon cycling, but it's been unknown whether they're active under winter conditions. Gareth Trubl (Lawrence Livermore National Lab) and colleagues published a new paper on active virus-host interactions at sub-freezing temperatures in Arctic peat soil. They used stable isotope probing targeted metagenomics to study Arctic soils under simulated winter conditions, and detected substantial active virus-host interactions. This highlights viruses as major community-structuring agents that likely modulate carbon loss in peat soils during winter. (Plus, it highlights how their technique illuminated interactions that would have been missed with standard metagenomics).

    Be sure to check out the 2-min video on this paper!

  409. Today on the Clubhouse Phage Phridays at 2PM Eastern, Jessica and Jan from Phage Directory will continue last week's discussion on the State of Phage Survey results; come ask all your questions about what we found about who's collecting which phages, where in the world, how many, and how they're characterizing them!

    If you missed out on past Phage Phridays on Clubhouse, head on over to YouTube to listen to recordings, like this recent session on phage derived antimicrobials with guest speaker Dr. Rob Lavigne.

  410. Twitter call-out from Barbara Brenner; phages-to-patients: We are looking for experts to draft (inter-)national guidelines on phage therapy for medical doctors and clinics treating all aspects from "who can get it" over "how is it to be applied" to "is it legal" and "who pays". Cordial invite to join the team.

  411. Jessica Sacher will chair the next Phage Phun session, which will be Wednesday Oct 27 at 9AM Pacific. Join us for this informal virtual networking session by registering here. (If you’re already signed up for the PHAVES series or a past Phage Phun, no need to register again; we’ll send you the link closer to the date).

  412. Last chance to get your phage bioinformatics manuscript into PHAGE Journal's special phage AI and informatics issue! If you're working on AI in phage biology or therapy, or tools for host discovery, prediction, etc, submit your manuscript by Oct 31.

    Want inspiration? The newest paper published as part of this special issue is on the INPHARED tool for identifying of biases in the collection of cultured phage genomes by Ryan Cook and colleagues.

  413. Jessica Sacher will chair the next Phage Phun session, which will be Wednesday Oct 27 at 9AM Pacific. Join us for this informal virtual networking session by registering here. (If you’re already signed up for the PHAVES series or a past Phage Phun, no need to register again; we’ll send you the link closer to the date).

  414. The Ibadan Bacteriophage Research Team is celebrating World Phage Week 2021 with a webinar series on October 29 (3-5PM West African Time) and Oct 30 (1-4PM West African Time). The theme will be "Assessing the Readiness of the Global Phage Community in Combatting AMR".

    Come hear talks by Prof. Graham Hatfull, Prof. Jesca Nakavuma, Prof. Zuzanna Drulis-Kawa, and Dr. Jessica Sacher. Register at https://ibadanphageresearchteam.org!

  415. To celebrate Phage Week (22-28 October), Phage Directory is holding a Twitter #scicomm challenge! To participate, all you need to do is create Twitter posts that align with the daily prompts (e.g. tag your favourite phage people, tag your favourite phage paper, etc.) using the hashtag #PhageWeek2021 and tagging @phagedirectory & @stephh_lynch. Follow @phagedirectory to see daily prompts!

    We'll amplify your tweets throughout the week and recognize those who answer the most prompts! Keep an eye out for more details to come!

  416. The Ibadan Bacteriophage Research Team is celebrating World Phage Week 2021 with a webinar series on October 29 (3-5PM West African Time) and Oct 30 (1-4PM West African Time). The theme will be "Assessing the Readiness of the Global Phage Community in Combatting AMR".

    Come hear talks by Prof. Graham Hatfull, Prof. Jesca Nakavuma, Prof. Zuzanna Drulis-Kawa, and Dr. Jessica Sacher. Register at https://ibadanphageresearchteam.org!

  417. The Ibadan Bacteriophage Research Team is celebrating World Phage Week 2021 with a webinar series on October 29 (3-5PM West African Time) and Oct 30 (1-4PM West African Time). The theme will be "Assessing the Readiness of the Global Phage Community in Combatting AMR".

    Come hear talks by Prof. Graham Hatfull, Prof. Jesca Nakavuma, Prof. Zuzanna Drulis-Kawa, and Dr. Jessica Sacher. Register at https://ibadanphageresearchteam.org!

  418. Twitter call out from Ibadan Bacteriophage Research Team: Would you like to be a part of the #WorldPhageWeek Celebration (coming up in late October 2021) as an organization or a genomic company?

    You can do this through the following: • Sponsored Email Adverts • Time slots for product presentation • Advert placements in the new IBRT PHAMILIA Journal

    For further enquiries email the Ibadan Bacteriophage Research Team.

  419. Congratulations to Dr. Jeremy Barr who was named a 2021 Victorian Tall Poppy Award winner! The Tall Poppy Award was created to recognise Australian intellectual and scientific excellence. Dr. Barr leads a 14-member research group at Monash University and has published pioneering work in the field of phage biology and phage therapy. He is the most cited phage researcher in the country and is an exemplary leader of his field. His work has already saved the life of one patient, and his recent discoveries are likely to soon save many more.

  420. Necrotizing enterocolitis is a currently unpreventable life-threatening GI disorder of preterm infants. Fecal microbiota transplantation is promising, but risks transfer of pathogenic microbes. Anders Brunse (University of Copenhagen, Denmark) and colleagues published a new paper in The ISME Journal showing transplantation of fecal filtrate (which contains phages but not bacteria) safely protects against necrotizing enterocolitis in piglets.

  421. Question for the phage community via Twitter from Alexander Hynes, Assist. Prof. at McMaster University: "I've been seeing more phage characterization papers that "optimize MOI" for higher titres. Why? I don't see biological insight, and while practical, these never seem to optimize any other parameters. Why is this singled out? What's the history I'm missing here?". Head over to the Twitter thread to share your insights!

  422. Another feather in the cap for African phage researchers!!

    Dr. Jerrold Agbankpe was awarded the Iso Lomso Visiting Scholar Award to collaborate with researchers at the Stellenbosch Institute for Advanced Study to develop phages as future antibiotic alternatives. Dr. Agbankpe also won the Postgraduate Fellowship from The World Academy of Sciences to continue his further phage research with colleagues in Pakistan on developing phages against Campylobacter.

    Ms. Yayra Audrey Addablah (Universite Felix Houphouet-Boigny, Cote d'Ivoire) won the Ideas Matter Fellowship to support her research developing phages that could be used to kill bacteria in drinking water and on food processing surfaces.

    Congratulation to the the award recipients! Read more in the Phages for Global Health newsletter!

  423. Dear Phage aficionados,

    We are excited to announce the Inaugural Symposium on Bacteriophages and Bacteriophage-derived Technologies to be held on December 10th 2021 in Singapore, jointly organised by Lee Kong Chian School of Medicine (NTU), Singapore-MIT Alliance for Research and Technology (SMART) and Yong Loo Lin School of Medicine (NUS). We warmly invite you to exchange ideas and discuss recent advances in phage research.

    The one-day symposium will feature presentations by local and international bacteriophage experts and aficionados. Speakers include Keynote speaker John Chen (NUS), Niranjan Nagaranjan's laboratory (A*STAR), Karina Gin's Laboratory (NUS), Scott Rice's Laboratory (NTU, SCELSE), Andrea Kwa (SGH, Duke-NUS), Maurice van Steensel (NTU), Navin Kumar Verma (NTU), Wilfried Moreira (NUS), and more. The day will be closed by a group discussion on the future of bacteriophage biology in Singapore. Depending on the level of interest, there will also be selected talks from submitted abstracts and a virtual poster presentation will be held. Registration and abstract submissions are open and we look forward to count you as a participant.

    Wilfried Moreira

  424. Greetings, I hope everyone is doing well during these trying times. My name is Jonathan Lalsiamthara, a Post Doc trainee at the Aballay Lab, OHSU, Portland, OR. I am reaching out to the community if anyone will share with us the cystoviruses or dsRNA bacteriophages (eg. phi6, phi8, phi12, phi13, phi2954, phiNN, and phiYY). I am interested in studying host-pathogen interaction using the C. elegans model, and we assure the requested strains will be used for research purposes only and not to be shared with a third party. I will be very grateful if you will reach me at lalsiamt@ohsu.edu to discuss any further details. Thank you and Best Wishes- Jonathan, Portland

  425. The Centre of Microbiome Science (Ohio State University) is organizing a Viromics workshop webinar series (virtual) on October 13-15, 2021. The workshop will cover virus identification and classification tools, and virus databases. See the full agenda and register here.

  426. Marion Bichet (Monash University, Australia) and colleagues published a protocol in Star Protocols for studying phage interactions with in vitro epithelial cell layers. They developed a simplified method for high-titer phage purification and cleanup and a comprehensive technique to look at phage-epithelial cell interaction under the microscope. They also describe the use of transwells to study microorganism transcytosis and whole-cell analysis for quantification of intracellular phage particles.

  427. Graça Pinto (University of Minho, Portugal) and colleagues published a research article in FEMS Microbiology ecology on the interactions of phage ace and shiga toxin-producing Escherichia coli during biocontrol. This work demonstrated that phage Ace is a safe biocontrol agent against STEC contamination and that the emergence of bacteriophage insensitive mutants did not represent a greater risk in environmental persistence and human pathogenicity.

  428. Stephanie Lynch will host the next Phage Phun session, which will be Wednesday September 29 at 3PM Pacific (an Australian friendly time!). Join us for this informal virtual networking session by registering here. (If you’re already signed up for the PHAVES series or a past Phage Phun, no need to register again; we’ll send you the link closer to the date).

  429. Stephanie Lynch will host the next Phage Phun session, which will be Wednesday September 29 at 3PM Pacific (an Australian friendly time!). Join us for this informal virtual networking session by registering here. (If you’re already signed up for the PHAVES series or a past Phage Phun, no need to register again; we’ll send you the link closer to the date).

  430. Xin You (Helmholtz Centre for Environmental Research, Germany) and colleagues published a preprint on phage co-transport with hyphal-riding bacteria. They report the ability of hyphal-riding bacteria to transport lytic phages and utilize them as ‘weapons’ during colonization of new water-unsaturated habitats. Their data emphasize the importance of this phenomenon in regulating fitness and composition of microbial populations.

  431. For PHAVES #21, Aël Hardy, PhD student at Forschungszentrum Jülich, Germany, will give a talk entitled 'Molecular multitasking: inhibition of phage infection by aminoglycoside antibiotics' on September 7 at 6PM CEST! Register here! (If you're already signed up for the PHAVES series, no need to register again; we'll send you the link closer to the date).

  432. Did you miss our special Wednesday edition of Phage Phriday AKA Phage Phwednesdays? No worries! It is now available on YouTube. Check out what's going on Down Under! Here Adriana Carolina Hernandez interviews Dr. Jon Iredell and other Phage Phriends about the Phage Australia initiative. Check us out normally on Fridays 1 PM Central time, hosted by Adriana Carolina Hernandez, Jean-Paul Pirnay and Sabrina Green. This is part of Phage Club (which now has close to 300 members!!).

  433. Graham Hatfull (University of Pittsburgh) and colleagues published a new review in Annual Review of Medicine on phage therapy for antibiotic-resistant bacterial Infections. They conclude that given the strong safety profiles of phages, the main challenges involve strain variation among clinical isolates, phage resistance, and the limitations of host immune responses. They conclude that the opportunities are considerable, with the potential to enhance and protect antibiotic efficacy, and provide a last resort in response to complete antibiotic failure.

  434. Dror Shitrit (Israel Institute of Technology, Israel) and colleagues published a paper in ISME Journal on how genetic engineering of marine cyanophages reveals integration but not lysogeny in T7-like cyanophages. They developed a method of investigating key cyanophage genes, made it adaptable to other host-virus systems, and found evidence of transient integration of T7-like cyanophage that is not part of a classical lysogenic cycle.

  435. For PHAVES #21, Aël Hardy, PhD student at Forschungszentrum Jülich, Germany, will give a talk entitled 'Molecular multitasking: inhibition of phage infection by aminoglycoside antibiotics' on September 7 at 6PM CEST! Register here! (If you're already signed up for the PHAVES series, no need to register again; we'll send you the link closer to the date).

  436. Thanks so much to all who joined us for our very first Phage Phun hour this week! We'll be hosting these monthly, at alternating times (9AM Pacific, then 3PM Pacific, repeating) on the last Wednesday of each month! Next month will be Wed, Sept 29 at 3PM Pacific! Register here! (If you're already signed up for the PHAVES series or a past Phage Phun, no need to register again; we'll send you the link closer to the date).

  437. Michael Shamash (McGill University, Canada) and colleagues published a perspective in ISME Journal on phages in the infant gut. They propose a theoretical framework governing early childhood gut virome assembly and development, which depends on phage and bacterial densities and diversity. They describe how understanding infant gut virome dynamics can inform identification of therapeutic windows for phage-driven gut microbiome remodeling.

  438. Kristopher Kieft (University of Wisconsin-Madison, USA) published a paper in Cell Reports on virus-associated organosulfur metabolism in human and environmental systems. They reported the discovery of 39 gene families involved in organosulfur metabolism encoded by 3,749 viruses from diverse ecosystems, including human microbiomes. Results reveal viruses as drivers of organosulfur metabolism with important implications for human and environmental health.

  439. We had so much fun with you all at the 'Phage Phun' sessions at Evergreen, that we've decided to incorporate these at the end of each month for the phage community at large!

    Our first 'Phage Phun' session will be this coming Wednesday, Aug 25 at 9AM Pacific (sorry Australia — we'll alternate next month to be at a friendlier time for you!). Sign up here.

    Phage Phun: informal, self-serve Zoom breakout rooms, where you can hop between topic-based rooms and meet new phage phriends! At Evergreen we had rooms like 'Catching up with phriends', 'Phage Therapy', 'Troubleshooting: bring a problem, get a solution', 'Phage in the Phield' and more.

    These will not be recorded; rather, the rooms will be open and you will be welcome to join and bring your coffee (or beer or other beverage!) and chat with others there.

  440. Janina Rahlff (University of Duisburg-Essen, Germany) and colleagues published a paper in Nature Communications on how lytic archaeal viruses infect abundant primary producers in Earth’s crust. They used a combination of metagenomics and a technique called virusFISH to show that highly abundant carbon-fixing organisms of the genus Candidatus Altiarchaeum are frequent targets of previously unrecognized viruses in the deep subsurface.

  441. Interested in contributing a blog post about your phage work (or your phage initiative) to C&T? Check out our Guest Writer Guide!

    In keeping with our 4x per year draft submission deadline system, our next deadline is approaching!

    • For Jan-Mar, submit by Dec 1.
    • For Apr-June, submit by Mar 1.
    • For July-Sept, submit by June 1.
    • For Oct-Dec, submit by Sept 1.
  442. Interested in contributing a blog post about your phage work (or your phage initiative) to C&T? Check out our Guest Writer Guide!

    In keeping with our 4x per year draft submission deadline system, our next deadline is approaching!

    • For Jan-Mar, submit by Dec 1.
    • For Apr-June, submit by Mar 1.
    • For July-Sept, submit by June 1.
    • For Oct-Dec, submit by Sept 1.
  443. Interested in contributing a blog post about your phage work (or your phage initiative) to C&T? Check out our Guest Writer Guide!

    In keeping with our 4x per year draft submission deadline system, our next deadline is approaching!

    • For Jan-Mar, submit by Dec 1.
    • For Apr-June, submit by Mar 1.
    • For July-Sept, submit by June 1.
    • For Oct-Dec, submit by Sept 1.
  444. Dr. Chip Schooley is leading an International Antiviral Society-USA webinar on phage therapy Aug 17 at 10AM. This is designed for clinical decision makers actively involved in HIV care and research, including physicians, physician assistants, nursing professionals, pharmacists. Participants will learn to describe important advancements in phage therapeutics and describe the potential applications of phage therapeutics in clinical practice.

  445. We had so much fun with you all at the 'Phage Phun' sessions at Evergreen, that we've decided to incorporate these at the end of each month for the phage community at large! We will announce the first one soon!

    Phage Phun: informal, self-serve breakout rooms, where you can hop between topic-based rooms and meet new phage phriends! At Evergreen we had rooms like 'Catching up with phriends', 'Phage Therapy', 'Troubleshooting: bring a problem, get a solution', 'Phage in the Phield' and more... (clearly there are bonus points if you can make the 'Ph' work for yours...). We can also accommodate specific subject matter rooms, like 'RNA seq analysis' (because talking science is super phun too!).

    If you've got a suggested room title/subject (whether serious or silly!), send them to phun@phage.directory anytime!

  446. Ameneh Khatami (The Children’s Hospital at Westmead and University of Sydney) and colleagues published a new paper in EMBO Molecular Medicine on bacterial lysis, autophagy and innate immune responses during adjunctive phage therapy in a child. This describes the successful treatment of a 7-year-old girl who avoided amputation thanks in part to phage treatment in 2019 (Phage Directory is proud to have helped source phages for this case!) See also Dr. Khatami's talk in PHAVES about this case.

  447. Christopher Turkington (University of California, Merced) and colleagues published a preprint on hafeZ, a tool able to identify ‘active’ prophages within bacterial genomes through genomic read mapping. They've applied hafeZ to publicly available sequencing data from bacterial genomes known to contain active prophages and shown hafeZ can accurately identify active prophage presence and location in host chromosomes.

  448. Quentin Leclerc (London School of Hygiene & Tropical Medicine) and colleagues published a preprint on the dual nature of phage: growth-dependent predation and generalized transduction of antimicrobial resistance. They developed mathematical models of the bacteria-phage relationship and found that dynamics were best captured by a model in which the phage burst size decreases as the bacteria population reaches the stationary phase.

  449. Kristen LeGault (University of California, Berkeley) and colleagues published a paper in Science on how temporal shifts in antibiotic resistance elements govern phage-pathogen conflicts. They used time-shift experiments to look at co-evolution of epidemic Vibrio cholerae and lytic phages from cholera patient stool samples, and found that phage infection leads to dissemination of both phage and antibiotic resistance.

  450. PhReD Database is relaunching!

    The Phage Receptor Database (PhReD) compiles receptors involved in phage-host recognition.

    We are proud to have partnered with the Bio-conversion Databank Foundation (BioDF) to relaunch and continuously improve PhReD. Many new and improved features have been added, including:

    • a visual filter search feature
    • over 560 receptors included (and counting)
    • over 560 phages included (and counting)
    • over 80 different hosts included (and counting)
    • exportable data tables
    • you can contribute your own receptors to the database

    You can access PhReD through the BioDF portal at: https://portal.bio-conversion.org

    — Dominic Sauvageau, University of Alberta

  451. Volta Labs is automating Next Generation Sequencing sample prep (for Illumina, Oxford Nanopore and Pac Bio). They recognize that increasing the throughput (and lowering the cost) of sequencing will become critical to the phage field moving forward, so they're eager to talk to researchers who can give feedback on their proposed system. Watch a video on their disruptive fluidic system technology here. If you're open to providing some feedback to the Volta team, reach out to Nick at nick@voltalabs.co.

  452. Thanks so much to everyone who joined us for the 24th Biennial Evergreen International Phage Meeting (and first time as a hybrid physical/virtual meeting!), which is wrapping up today! We had an incredible time with all of you!

    For all of you who registered (all 502 of you!), check out the video, abstract and poster libraries we've compiled on the website!

    For a limited time, even if you weren't able to attend, you may still register to access the content and interact virtually with participants.

    Stay tuned; we'll provide highlights and stats from the meeting in the weeks to come, as well as details on how long the videos and posters will be accessible.

  453. Matthew Bond (Dartmouth College, USA) published a paper in eLife on how matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells. They showed that T7 phage remains viable when trapped in an E. coli biofilm, and that if cells colonize a biofilm before phages, they can be killed by phage exposure if it occurs soon after. However, if cells are present long enough before phages, they gain protection via envelopment within curli-producing clusters of resident biofilm cells.

  454. Audrey Labarde (Université Paris-Saclay, France) and colleagues published a paper in PNAS on temporal compartmentalization of viral infection in bacterial cells. They showed that infection of Bacillus subtilis by phage SPP1 hijacks host replication proteins to assemble hybrid viral–bacterial 'replisomes'. They show that the phage restructures the crowded host cytoplasm to confine, at different cellular locations, the sequential processes essential for its multiplication.

  455. Kema Malki (University of South Florida) and colleagues published a paper in AEM on spatial and temporal dynamics of prokaryotic and viral community assemblages in a lotic system. They looked at prokaryotic and viral abundance and diversity at three sites in the Manatee Springs system in Florida, and found greater fluctuations in community composition with increasing distance from the spring outflow. Their results reflect the stability of the groundwater environment.

  456. The 24th Biennial Evergreen International Phage Meeting is coming up in a few days (Aug 2-5, plus workshop days on Aug 1 and 6)!

    The schedule is up on https://evergreen.phage.directory if you'd like to check it out! And it's not too late to register if you're still interested in attending! (This is a hybrid meeting, so you can attend either online or in-person!)

    This iconic meeting is organized and hosted, as always, by Betty Kutter and her amazing entourage of Evergreen phage enthusiasts, past and present. Phage Directory is proud to help support the online aspect of the meeting. And of course, a huge shoutout to the sponsors of Evergreen this year, who've helped make it a reality in this challenging year: PhageBiotics Research Foundation, TAILOR Labs, and JAFRAL!

    Looking forward to seeing many of you very soon!

  457. OnePetri for iOS is now publicly available — accelerating common Petri dish assays with the power of AI! Count hundreds of phage plaques in a matter of seconds and easily perform plaque assay calculations in the palm of your hand. Support for bacterial CFUs & other assays is coming soon.

    For more information and to download OnePetri (for free!), visit onepetri.ai! Don’t hesitate to reach out with any questions!

    — Michael Shamash (McGill University, michael@onepetri.ai)

  458. CRISPR-Cas12j is a recently identified family of miniature RNA-guided endonucleases from phages. Arturo Carabias (University of Copenhagen) and colleagues published a new Nature Communications paper on the structure of CRISPR-Cas12j3. This is the first structural insight into this new nuclease family, and shows why Cas12j unleashes unspecific ssDNA degradation after activation.

  459. It's recently been discovered that during replication, some jumbo phages (genomes > 200 kb) establish complex subcellular organization within their host. Vorrapon Chaikeeratisak (University of California San Diego) and colleagues published a new minireview in Frontiers in Microbiology on what's currently understood about jumbo phages that form a nucleus-like structure, or 'phage nucleus' during replication.

  460. A new ESCMID Study Group that will deal with phage therapy has been created: the ESCMID Study Group for Non-traditional Antibacterial Therapy (ESGNTA).

    ESGNTA aims to explore non-traditional antibacterials including phage and phage-related products for therapy, as well as increase and support the knowledge in phage lysin and other protein research, and understanding carriers and applications optimal for use in clinical settings (ex: gel, nanoparticles, etc.).

    You can visit the website of ESGNTA to learn more about its mission, objectives, and bylaws. Any ESCMID member can join (you can become an ESCMID member here) — please spread the word!

    Many thanks to the ESGNTA inauguration committee: Prof. Ran Nir-Paz, Prof. Tristan Ferry, Dr. Patrick Soentjens, Prof. Zuzanna Drulis-Kawa, and Prof. Joana Azeredo, whose hard work resulted in the ESGNTA being created and accepted into ESCMID!

  461. ASM Microbe 2022 will be held on June 9-13, 2022 in Washington, DC. This is the biggest microbiology conference in the world, and we strongly believe that there should be a session dedicated to phage therapy, which we would like to propose to ASM. The deadline for Session Proposal submissions is August 5th, 2021.

    We would therefore like your urgent feedback by July 29th, 2021, to help us prepare the proposal. Please let us know if you are aware of anyone else proposing a phage session. We need suggestions for speakers, topics or any other ideas that could help with the application and the session. We would also like to hear from anyone interested in helping to organize the session.

    We've set up an online form for your input here. We welcome and appreciate all suggestions and offers of assistance!

    Feel free to email Ben Burrowes about further questions/more info: ben@bbphage.com

  462. Phage Phridays on Clubhouse released this recording of last week's conversation with Josh Borin from the Meyer lab at UCSD, wherein they discuss his PNAS paper titled "Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance".

    Join Phage Phridays, hosted every Friday by Sabrina Green, Adriana Carolina Hernandez, and Jean-Paul Pirnay in the 'Phage Club' within the Clubhouse app!

  463. Biochimpharm, a Georgian phage biotech company, has been awarded a $150,000 grant from the EU and the United Nations FAO to support production of PowerPhage, a phage cocktail product that targets Salmonella, E. coli and Shigella, for veterinary use. This grant, together with the $1M investment raised, is aimed to allow a 300% increase in the production of PowerPhage.

  464. Luke Hillary (Bangor University, UK) and colleagues published a preprint on how diverse soil RNA viral communities have the potential to influence grassland ecosystems across multiple trophic levels. They identified 3,462 viral OTUs and assessed their spatial distribution, phylogenetic diversity and potential host ranges. The study represents an important step towards the characterization of terrestrial RNA viral communities and the intricate interactions with their hosts.

  465. Yicheng Xie (Texas A&M) and colleagues published a research article in Frontiers in Microbiology on differential phage efficacy in controlling Salmonella in cattle hide and soil models. They found that phage ability to plaque on a bacterial strain is a poor indicator of antimicrobial activity, but performance in liquid cultures is a better predictor. They also concluded that a phage capable of achieving bacterial reduction in one model is more likely to perform well in another.

  466. Daniela Staquicini (Rutgers Cancer Institute of New Jersey) and colleagues published a new paper in PNAS on the design and proof of concept of two phage-based, cold-free COVID-19 vaccination strategies. They show that aerosol vaccination with phage particles displaying short S protein epitopes, and subcutaneous vaccination with adeno-associated virus/phage particles carrying the entire S protein gene, both elicit systemic and specific immune responses in mice. Paper | NSF Press release

  467. Evergreen Logo

    There's still time to register for Evergreen!

    Sign up here to be part of the longest running phage meeting.

    Phagebiotics Research Foundation and Phage Directory present the 24th biennial Evergreen International Phage Meeting August 2-5th 2021. This year you can participate in person or virtually. The meeting will include primary session talks, live and virtual poster sessions, daily flash talks and Q&A for all participants.

    As always, we look forward to hearing about all the exciting phage work going on worldwide!

    Thanks to our sponsors, Phagebiotics and TAILOR! Want to sponsor Evergreen? There's still time!

  468. Tired of manually counting plaques on petri dishes? Harness the power of AI to count plaques in near real-time with OnePetri, an automated plaque counting iOS app. Here’s a short clip of the app in action.

    I am looking for beta testers to help test OnePetri before publishing the app for free, alongside its source code, next month. If you have a device running iOS 13 or newer, please fill out this form to register for beta access and start saving time with OnePetri! Questions? Don’t hesitate to reach out by email: michael@onepetri.ai .

    Looking forward to sharing some more news in the weeks ahead! — Michael Shamash (McGill University)

  469. The FDA's Center for Biologics Evaluation and Research and NIH's NIAID have announced a public workshop entitled “Science and Regulation of Bacteriophage Therapy.”

    The purpose of the public workshop is to exchange information with the medical and scientific community about the regulatory and scientific issues associated with phage therapy. It will run Aug 30-Sep 1, and is free to attend. Sessions will include choosing and characterizing phages for therapy, manufacturing for stability and clinical use, using phages clinically, and research gaps that remain.

    Register here.

  470. I observed lysis plaques all over ATCC P. aeruginosa 27853 soft agar overlay prepared from overnight bacterial cultures. The bacterial strain is reported to contain prophage sequences in its genome. ATCC website also mentions that phage may be present in the culture. Could it be prophage induction (maybe due to stress conditions from high cell densities or spontaneous?) or phage contamination? Please email thongshuhua@gmail.com if you can help!

  471. Rebekah Dedrick (University of Pittsburgh) and colleagues published a new paper in Nature Medicine on how antibody-mediated neutralization limited phage treatment of a pulmonary M. abscessus infection. They used the same phages that worked well in their well-known 2019 UK patient case, but they didn't work well in this new patient, which led to important insights into the immune system's impact on phage therapy. Paper | Behind-the-Paper by Graham Hatfull and Keira Cohen | Public digest article, Ars Technica

  472. Matthias Hoetzinger (Linnaeus University, Sweden) and colleagues published a paper in Environmental Microbiology on how the dynamics of Baltic Sea phages are driven by environmental changes. They isolated 121 phage strains infecting three bacterial hosts during a Baltic Sea mesocosm experiment, and found tons of insights, including that phytoplankton blooms may influence succession of heterotrophic bacteria through their phages.

  473. Hayley Nordstrom (University of Pittsburgh School of Medicine) and colleagues published a preprint showing genomic and functional characterization of P. aeruginosa-targeting phages isolated from hospital wastewater. They used a panel of clinical isolates (most from people with CF) to isolate over a dozen phages from hospital wastewater, characterized the isolates, the phages, and phage-resistant mutants, and got tons of new functional genomics insights! Tweet thread.

  474. Whitney Greene (Mote Marine Laboratory and Aquarium, Florida) and colleagues published a paper in the Journal of Aquatic Animal Health describing the successful treatment of Shelley* the sea turtle with phages!

    *Some of you may remember us asking the community for help sourcing phages for Shelley's infection back on New Year's Eve of 2018. We though no one would reply, because hey, it was NYE! But it ended up being one of our most popular tweets, and it led to finding multiple phage labs willing to help search their collections for Citrobacter freundii phages to help treat this turtle's years-long shell infection. Another amazing success for the phage community!

  475. Nichith Ratheesh (Arizona State University) published a preprint on how a member of the oral microbiota can actively transport phages by swarming, leading to disruption of E. coli biofilms. They found that Capnocytophaga gingivalis forms tunnels within the 'prey' (E. coli) biofilm, and when phages are actively delivered, curli fiber-containing E. coli biofilms are no longer protected against phage infection. Their results suggest that active delivery of phages by a self-propelled swarm might improve phage therapy pharmacokinetics.

  476. Ankita Kothari (Lawrence Berkeley National Laboratory, USA) and colleagues published a paper in mSystems on how ecogenomics of groundwater phages suggests niche differentiation is linked to specific environmental tolerance. They analyzed groundwater plasmidomes and identified viral sequences, identified potential hosts, and linked sequences to a range of bacterial phyla. They also identified putative auxiliary metabolite genes for metal and antibiotic resistance, providing selective advantage to infected hosts.

  477. The Sydney Children's Hospitals Network (Kids Research) is excited to present the 4th webinar in their Advanced Therapeutics webinar series, "When a Virus is the Cure – phage therapy & mini lungs", which will focus on phage therapy and airway organoids.

    When: Jul 23, 2021, 2:00 PM in Canberra, Melbourne, Sydney

    Phage therapy offers an exciting new treatment option to target difficult-to-treat infections, including infections in patients with cystic fibrosis. Airway organoids created from individual patients’ stem cells provide a model for that individual’s disease. They can be used for disease modelling and personalised medicine.

    Hear from two leading experts in paediatric infectious diseases and stem cell biology, who are investigating novel therapeutic options for patients with cystic fibrosis and other difficult-to-treat infections. Speakers will discuss: • Phage therapy – what is it and how are we using it to help patients at Sydney Children’s Hospitals Network? • Airway organoids - what are they and how do we use them in conditions such as Cystic Fibrosis?

    Register here

  478. ModelMEMS (Modelling Microbial Ecology at Multiple Scales) is hosting its second tutorial (virtually) Aug 17th (3-6 pm): "Exploring bacterial and phage interactions with dynamical models"

    Hilje Doekes will give the next tutorial in August, this time about modeling phage/bacterial dynamics. Hilje is an expert in eco-evolutionary dynamical systems modeling and has been interested in understanding the dynamics governing the lysis/lysogenic decisions of phages. She recently published a beautiful paper about modeling a viral small-molecule communication system that governs the switch between lytic and lysogenic modes of a phage.

    Hilje will cover the broader question of how to model phage-bacterial interactions and how to use these models to gain insights into the detailed ecological and evolutionary dynamics that are governed by phages. She will first give a historical and current overview of previous models(e.g. and). Next, she'll talk about her own work and finalize the tutorial with a practical hands-on tour of her model.

    Register here and watch the previous tutorial here!

  479. Xiaorong Wu (The Catholic University of America, Washington, DC) and colleagues published a new paper in mBio on how phage T4 escapes CRISPR attack by 'minihomology' (very short stretches of sequence identity) recombination and repair. This is a novel counterdefense mechanism by which phage T4 restores its genomic DNA following CRISPR cleavage. This subtle functional tuning of pre-existing DNA metabolism leads to a profound impact on phage survival.

  480. Bjorn Criel (Ghent University, Belgium) and colleagues published a research article in Viruses on PhaLP: a database for the study of phage lytic proteins and their evolution. This database serves as an open portal to facilitate the development of phage lytic proteins. PhaLP can act as a starting point for the broad community of enzybiotic researchers, while the steadily improving evolutionary insights will serve as inspiration for protein engineers.

  481. Anna Dragoš (Technical University of Denmark) and colleagues published a new paper in Current Biology on how phages carry interbacterial weapons encoded by biosynthetic gene clusters. They investigated phage-encoded Biosynthetic Gene Clusters (BGCs), challenging the relationship between phage origin and BGC structure and function. They found BGCs in temperate phages that infect certain human-associated bacteria, with almost all phage BGCs being bacteriocins. Some BGCs provide a competitive fitness advantage for lysogenized hosts.

  482. Tamsin Redgwell (Copenhagen University Hospital) and colleagues published a preprint in bioRxiv describing how prophages in the infant gut are largely induced, and may be functionally relevant to their hosts. They found prophages in the infant gut are largely unique to the individual and not shared. The most abundant group of phages are novel and possess elements that may allow them to maintain differentially susceptible subpopulations of their host bacterium.

  483. Recent updates to C&T guest writing process!

    Thanks to our super engaged community of phage enthusiasts (all of you!) we are outgrowing our old ways of getting each Capsid & Tail feature ready the week or two before it comes out. So we're updating how we handle guest blog submissions!

    We will now be accepting blog submissions on a quarterly basis; so keep an eye on these four deadlines throughout the year if you're thinking of contributing:

    • For consideration for publication between Oct-Dec, send us your finished draft by Sept 1.
    • For Jan-Mar, send us your draft by Dec 1.
    • For Apr-June, send us your draft by Mar 1.
    • For July-Sept, send us your draft by June 1.

    Submissions will be published in an approximately first-come, first-served basis, depending on any editing / back-and-forth that may be required.

    Interested in contributing a blog post about your phage work (or your phage initiative) to C&T? Check out our Guest Writer Guide!

    If you have feedback about our process, or what we publish (or should publish more of!), please email capsid@phage.directory — we'd love to hear from you!

    Thanks to Stephanie Lynch for her help in rethinking our system, and for her help coordinating C&T submissions from here on out!

  484. Society for Bacteriophage Research and Therapy, India is organizing the 2nd International Conference on Bacteriophage Research on July 22-24, 2021. The aim of this conference is to bring researchers, professors, and university students from both academia and industry together to share new knowledge and foster and strengthen collaboration.

    Call for Abstracts: SBRT invites the submission of papers, presentations, and posters for the conference. The selected abstract/paper will be published in the International Journal of Bacteriophage Research for free.

    Call for awards:

    1. Lifetime achievement awards in the field of bacteriophage
    2. Young scientist awards in the field of bacteriophage under different fields (≤50 Years)
    3. Outstanding scientist awards
    4. Best oral presentation awards
    5. Best poster presentation awards
  485. Rodrigo Ibarra-Chávez (University of Copenhagen) and colleagues published a review in FEMS on emerging applications of phage satellites in biotechnology. They found phage satellites exploit phages to ensure their own propagation and horizontal transfer into new bacterial hosts. The article reviews parasite-host dynamics of the known phage satellites, their genomic organization, and hijacking mechanisms, along with diverse biotech applications.

  486. Michael Blazanin and Paul Turner (Yale University) published a preprint in EcoEvoRxiv on the role of community context in shaping bacteria-phage ecology and evolution. They synthesized the emerging body of bacteria-phage experiments in medium-complexity communities, and found that community context (the presence of other bacterial species) sometimes has zero effect on phage-host evolution, and other times constrains phage-host coevolutionary dynamics. They highlight that this area is full of unanswered questions ready for further investigations.

  487. Kristopher Kieft (University of Wisconsin–Madison) and colleagues published a research article in Nature Communications on the ecology of inorganic sulfur auxiliary metabolism in widespread phages. They identified 191 phages encoding 227 auxiliary metabolic genes (AMGs) for the oxidation of sulfur and thiosulfate. Profiling of AMGs suggested significant contributions by phages to sulfur and thiosulfate oxidation. The study provides fundamental insights into the distribution, diversity, and ecology of phage auxiliary metabolism associated with sulfur.

  488. PHAVES #19 will be a seminar by Dr. Ameneh Khatami, who is a senior lecturer in Child and Adolescent Health for the University of Sydney, based at The Children’s Hospital at Westmead, where she also works as a paediatric infectious diseases physician.

    Ameneh's talk is entitled 'Phage therapy for difficult-to-treat infections in children', and will take place July 1, 9 AM Sydney time (June 30, 4 PM Pacific Time).

    Small group networking to follow! Register here for this event or future PHAVES events!

  489. PHAVES #19 will be a seminar by Dr. Ameneh Khatami, who is a senior lecturer in Child and Adolescent Health for the University of Sydney, based at The Children’s Hospital at Westmead, where she also works as a paediatric infectious diseases physician.

    Ameneh's talk is entitled 'Phage therapy for difficult-to-treat infections in children', and will take place July 1, 9 AM Sydney time (June 30, 4 PM Pacific Time).

    Small group networking to follow! Register here for this event or future PHAVES events!

  490. Apurva Virmani Johri (Vitalis Phage Therapy, India) and colleagues published a case report in Frontiers in Pharmacology on phage therapy for treatment of chronic bacterial prostatitis. Significant improvements in symptoms and re-testing of samples after phage treatment indicated a reduction in bacterial load and resolution of the infection.

    This paper is extra notable because it represents Vitalis Phage Therapy's first published case report! (It's also a great example of collaboration with the Eliava Phage Therapy Center!)

  491. Joshua Borin (University of California San Diego) and colleagues published a new paper in PNAS showing that coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance. For example, they found that a phage trained for 28 days suppressed bacteria ∼1,000-fold for 3-8x longer than its untrained ancestor. Interestingly, one way that this phage improved was by recombining with a defunct prophage gene in the host genome, which doubled its fitness.

  492. Clément Coclet and Simon Roux (DOE Joint Genome Institute) published a review in Current Opinion in Virology on major challenges of host prediction methods for uncultivated phages. They highlight different approaches, giving their distinct strengths and limitations. They also outline complementary experimental assays which are being proposed to validate and refine these bioinformatic predictions.

  493. Stephan Tetter (ETH Zurich) and colleagues published a report in Science on developing virus-like 'artificial nucleocapsid' carriers for diverse vaccine and delivery applications. They evolved a protein that forms multimeric, spherical cages into a highly efficient capsid that selectively packages its own encoding RNA. Additionally, directed evolution resulted in changes to the encoding RNA structure that enabled efficient uptake versus other cellular RNAs.

  494. Evergreen Logo

    Evergreen is coming and we are all-in!

    Sign up here to be part of the longest running phage meeting.

    Phagebiotics Research Foundation and Phage Directory present the 24th biennial Evergreen International Phage Meeting August 2-5th 2021. This year you can participate in person or virtually. The meeting will include primary session talks, live and virtual poster sessions, daily flash talks and Q&A for all participants.

    Please submit abstracts by July 2nd if you would like to be considered for oral presentations.

    We would love to see your posters! Please submit by July 16th.

    As always, we look forward to hearing about all the exciting phage work going on worldwide!

  495. Evergreen Logo

    Evergreen is coming and we are all-in!

    Sign up here to be part of the longest running phage meeting.

    Phagebiotics Research Foundation and Phage Directory present the 24th biennial Evergreen International Phage Meeting August 2-5th 2021. This year you can participate in person or virtually. The meeting will include primary session talks, live and virtual poster sessions, daily flash talks and Q&A for all participants.

    Please submit abstracts by July 2nd if you would like to be considered for oral presentations.

    We would love to see your posters! Please submit by July 16th.

    As always, we look forward to hearing about all the exciting phage work going on worldwide!

  496. Evergreen Logo

    Evergreen is coming and we are all-in!

    Sign up here to be part of the longest running phage meeting.

    Phagebiotics Research Foundation and Phage Directory present the 24th biennial Evergreen International Phage Meeting August 2-5th 2021. This year you can participate in person or virtually. The meeting will include primary session talks, live and virtual poster sessions, daily flash talks and Q&A for all participants.

    Please submit abstracts by July 2nd if you would like to be considered for oral presentations.

    We would love to see your posters! Please submit by July 16th.

    As always, we look forward to hearing about all the exciting phage work going on worldwide!

  497. This is Hala Ali, a postdoctoral researcher at Bacteriology Department, Animal Health Research Institute, Egypt. I am looking for sponsor lab to host me for 6 or 9 months as a postdoc scholar funded by Egypt. I am interested in developing novel phage-antibiotics strategy for combating MDR-S. aureus mastitis. Please email me at alihala312@gmail.com if you know of any opportunities or may be willing to host me.

  498. Some of you may recall that, last year, I put out a call to contribute to a special issue of Pharmaceuticals on “Bacteriophages as Therapeutic Delivery Vehicles.”

    We have 10 articles published or near completion already but there’s room for more. We’ve had the submission deadline extended to July 30th.

    If you are doing any work or want to review work using phages that have been modified in some way to improve or create new therapies, your work will fit here. We have articles on phage encapsulation to improve delivery, phage use in cancer therapeutics, and luminescent reporter phages among others already so the topic is pretty broad.

    More information about the issue is here or you can contact me, Paul Hyman (phyman@ashland.edu) or Tina Schneider (clschnei@carrollu.edu) or Bryan Gibb (bgibb@nyit.edu). I’m looking forward to hearing from you.

  499. My advisor is looking for a student who’s interested in phage biology to study with him for Master’s degree at University of Florida, college of veterinary medicine. He has tuition fee and expenses for the student. If anyone knows a undergraduate student who’s seeking the degree, please contact Dr. Tuanyok, tuanyok@ufl.edu

  500. A study led by Carlos Gonzalez and colleagues at the Center for Phage Technology at Texas A&M has led to the development of the first curative and preventive phage treatment against Xylella fastidiosa, which causes Pierce’s disease in grapevines. This is the world's first organic treatment for Pierce's disease in grapevines, and has been approved by the US EPA, registered as a pesticide in California, and approved for use in organic farming.

  501. Valuable phages have good shelf-life properties, but how can we reliably characterize the structural parts of the phage particle? Tze Thung (Centre to Impact AMR, Monash University) and colleagues published a new mSystems paper on their new machine-learning approach and prediction tool, STEP3, to define the component parts of phage virions. For a nice bite-sized walk-through, see this Twitter thread by @CentreImpactAMR.

  502. The African Phage Forum (APF) hosted its third and fourth events in April and May — thanks to all those who attended!

    APF 3: Dr. Jesca Nakavuma, Veterinarian, Senior Lecturer, Microbiologist, and Former Deputy Principal of the College of Veterinary Medicine, Animal Resources and Biosecurity at Makerere University, Uganda, East Africa (Recording here)

    APF 4: Dr. Arshnee Moodley, who leads the CGIAR AMR Hub, Kenya, gave a talk entitled 'Challenges of using phages in the veterinary world: My learning curve'. (Recording here)

    Learn more, and/or subscribe for future APF seminars here.

  503. The International Virus Bioinformatics Meeting 2022 (ViBioM 2022) will be held in Valencia, Spain, 24–25 March 2022. The meeting (currently planned to be in-person) is jointly organized by the European Virus Bioinformatics Center (EVBC), the Institute of Agrochemistry and Food Technology (IATA-CSIC), and the University of Valencia. Registration is free of charge, works on a first-come, first-serve basis and is open for 120 participants.

  504. Wondering whether collecting and studying phages is worth your while? Here's a new article in Cystic Fibrosis News Today that remembers Mallory Smith, a young woman who phages could have saved, if they'd only been accessible a few days earlier. The article talks about how Mallory's mom, Diane Shader Smith, has continued Mallory's legacy through speaking about her story (172 presentations to date!) and fundraising for phage therapy. We highly recommend reading Mallory's memoir, Salt in My Soul, a beautiful piece adapted from her diary entries for her last decade of life.

  505. Carlos Guerrero-Bustamante (University of Pittsburgh) and colleagues published a new paper in MBio showing their progress toward developing a phage cocktail for tuberculosis; using genome engineering and phage genetics, they have created a five-phage cocktail effective against diverse Mycobacterium tuberculosis strains, which minimizes phage resistance and does not interfere with antibiotic efficacy.

  506. We warmly invite you to attend our 11th annual international bacteriophage conference “Phages 2021” – the longest running phage conferences series in Europe - which will be held virtually, via Zoom or equivalent, on 07th-08th September 2021. The conference will include oral presentations by established phage scientists, emerging researchers in an Early Career Researchers (ECR) symposium as a part of the main agenda, as well as flash talks by poster presenters (see confirmed speakers).

    Up to 30% early registration discount available until 28th June 2021. Fees for students start at as low as £50.

  507. The African Phage Forum (APF) will host its fourth event next week, May 26 at 6-8PM East Africa Time (8-10AM Pacific time). The guest speaker will be Dr. Arshnee Moodley, who will give a talk entitled 'Challenges of using phages in the veterinary world: My learning curve'.

    Dr. Moodley leads the CGIAR AMR Hub, Kenya, that was launched in 2019, with the aim to support efforts to mitigate the risks of agricultural associated antimicrobial resistance (AMR) in low- and middle- income countries working within a One Health framework. She is a microbiologist with a PhD in antimicrobial resistance and zoonosis from the University of Copenhagen (UCPH), Denmark.

    Learn more, sign up for her talk, and subscribe for future APF seminars here.

  508. We warmly invite you to attend our 11th annual international bacteriophage conference “Phages 2021” – the longest running phage conferences series in Europe - which will be held virtually, via Zoom or equivalent, on 07th-08th September 2021. The conference will include oral presentations by established phage scientists, emerging researchers in an Early Career Researchers (ECR) symposium as a part of the main agenda, as well as flash talks by poster presenters (see confirmed speakers).

    Up to 30% early registration discount available until 28th June 2021. Fees for students start at as low as £50.

  509. The NSW Government, Australian Federal Government and industry partners have committed $3 Million to launch “Phage Australia”. The project, led by Prof. Jonathan Iredell at the Westmead Institute for Medical Research, along with colleagues across Australia and internationally, will focus on the rapid translation of phage therapeutics into clinical practice. Phage Directory is excited to be a partner on this project!

  510. PHAVES #17 will be May 18, 5pm CEST (Paris time). Quentin Lamy-Besnier, a PhD student in the Debarbieux lab at the Institut Pasteur in Paris will present their team's newly launched Viral Host Range Database, an online tool for recording, analyzing and disseminating virus-host interactions.

    Come learn from Quentin how to use this much-needed new tool for the phage community! Small group networking to follow.

    Register for this talk and others in the PHAVES series at https://seminars.phage.directory!

  511. My name is Gábor Apjok, a PhD student from the Biological Research Centre of Szeged, Hungary. Recently, our hospitals in Hungary have detected multidrug resistant Acinetobacter baumannii, which we have started to collect. We are familiar with isolating phages from the environment, however, we have failed to do so in case of Acinetobacter phages. We investigated hospital sewage from various sources, river sediment, soil, to no avail. Next, we will check samples directly from patients (e.g. fecal samples, swabs etc.), however it takes time to get permission to handle samples of the sort. Because of the above reasons, we thought it would be best to seek help from the phage community. We are seeking Acinetobacter phages (and their cognate hosts to maintain phages) and would appreciate any help you can provide. Please contact me at: agabor723@gmail.com.

  512. The 27th annual Boston Bacterial Meeting is going to be held on June 10-11, 2021 organized by a diverse group of students and post-docs from several institutions. It has talks on Antibiotic Resistance (chaired by John Dekker, National Institutes of Health) and Phage and Gene Transfer (chaired by Alexander Meeske, Washington University), followed by breakout sessions and including a mentorship exchange program. Register by June 4!

  513. We hosted Dr. Justin Clark (phage bioinformatician at BCM Tailor Labs) in our recent phage bioinformatics series (co-hosted with IBRC), and many of you have been excitedly waiting for the recording! While unforeseen factors prevented us from sharing the original, here's a re-recorded adaptation: 'Phage On Trial—Bioinformatic analysis of therapeutic phages'. In this video, Justin goes through the basic bioinformatic analysis he performs in order to determine whether phages are suitable for phage therapy.

    P.S. The #phage-bioinformatics Slack channel mentioned with this video is now retired. Read the retirement notice.

  514. PHAVES #17 will be May 18, 5pm CEST (Paris time). Quentin Lamy-Besnier, a PhD student in the Debarbieux lab at the Institut Pasteur in Paris will present their team's newly launched Viral Host Range Database, an online tool for recording, analyzing and disseminating virus-host interactions.

    Come learn from Quentin how to use this much-needed new tool for the phage community! Small group networking to follow.

    Register for this talk and others in the PHAVES series at https://seminars.phage.directory!

  515. Dr. Evelien Adriaenssens and Dr. Matthew Gilmour (Quadram Institute, Norwich, UK) have won BBSRC partnership awards to collaborate with Canadian researchers! Dr. Adriaenssens’ partnership is with Dr. Hany Anany's lab at Agriculture and Agri-Food Canada, a department of the Canadian government concerned with farm and agri-based products, to focus on a One Health approach to understanding and using phages to control enteric pathogens, and their effects on the gut microbiome.

  516. The World Microbe Forum 2021 (June 20-24, online; an ASM and FEMS collaboration) this year will include a session on viruses of microbes convened by Madalena Pimental and Rob Lavigne, on behalf of the Viruses of Microbes 2020 team and ISVM, the International Society for Viruses of Microorganisms (become a member for free here: http://isvm.org).

    The session will be on June 23, and is entitled 'What’s New in the World of Viruses of Microbes?' This symposium focuses on recent advances in the fundamental biology and utility of the viruses of microorganisms, archaeal viruses, bacteriophages (or phages, the viruses of bacteria) and the viruses of microbial eukaryotes. This session provides the opportunity for young researchers to present their work.

    Register/submit an abstract now—early registration ends May 11; abstracts due by May 7.

  517. We cordially invite you to participate in the 2nd German Phage Symposium, which will take place Sept 13-14, 2021 at the University of Hohenheim, and will include keynote speakers Prof. Anat Herskovits, Prof. Ian J. Molineux and Prof. Dr. John Chen.

    For early career scientists, a "Young Scientists Poster Prize" will be awarded, and the winners have the chance to present their research on September 14.

    Register here by June 15. Please note, the number of participants is limited to 100, because the Symposium is planned as a face-to-face event. If this option will not be possible due to the pandemic, we will switch to an online format.

  518. PHAVES #17 will be May 18, 5pm CEST (Paris time). Quentin Lamy-Besnier, a PhD student in the Debarbieux lab at the Institut Pasteur in Paris will present their team's newly launched Viral Host Range Database, an online tool for recording, analyzing and disseminating virus-host interactions.

    Come learn from Quentin how to use this much-needed new tool for the phage community! Small group networking to follow.

    Register for this talk and others in the PHAVES series at https://seminars.phage.directory!

  519. Update from the PhageAI crew:

    We're proud to announce to you the release of PhageAI 0.8.0: extended repository and two new features: closest phages and Expert form!

    What's new:

    • uploading your sample and discovering top-10 closest phages in a global repository (alignment-free sequence comparison);
    • possibility of use an Expert form to share details about in silico analysis of phage life cycle if you are Expert user;
    • more than 22 000 publicly available bacteriophage genomes with their updated characteristics (lifecycle, taxonomy, hosts, similarities);
    • bug fixes and performance improvements based on your feedback.

    Check it out at https://phage.ai

  520. PHAVES #17 will be May 18, 5pm CEST (Paris time). Quentin Lamy-Besnier, a PhD student in the Debarbieux lab at the Institut Pasteur in Paris will present their team's newly launched Viral Host Range Database, an online tool for recording, analyzing and disseminating virus-host interactions.

    Come learn from Quentin how to use this much-needed new tool for the phage community! Small group networking to follow.

    Register for this talk and others in the PHAVES series at https://seminars.phage.directory!

  521. Dear fellow virologists, Welcome to the first conference of the World Society for Virology (WSV), which is a global non-profit organization established in 2017, to connect virologists around the world, with no restrictions or boundaries, and without membership fees. We have 40 eminent Keynote speakers, and already several interesting abstracts submitted, covering COVID-19 the first day, and all other fields of virology, including plant, animal, fungal, human and microbe viruses, such as phages and phage therapy, the next 2 days. Please see program for details on the two phage keynote talks!

    Please join us in June 16-18. 2021! All sessions are recorded for prime time viewing in all time zones!

    Abstract submission and early bird registration deadline: April 30th!

    Welcome! — Yigang Tong, PhD, Professor, Dean, College of Life Science and Technology, Beijing University of Chemical Technology, China

  522. Thanks to everyone who attended two exciting forums we helped co-host this week! Yesterday we had 'Phage Therapy UK: Moving toward clinical trials', which brought tons of fruitful conversations among phage-interested medical professionals, health policy experts and phage experts from the UK and beyond! If you attended, we'd love your feedback!

    And today we had the third rendition of the African Phage Forum, which began with a talk led by Dr. Jesca Nakavuma from Makerere University in Uganda, and turned into an interactive discussion about how phage researchers in Africa can progress and get funding for their work! We'll share recordings of both seminars soon!

    Whenever we can, we publish recordings of our events on our YouTube channel here — subscribe to get notified: https://phage.directory/youtube!

    And if you're part of this wonderful phage community, interested in hosting an online event or webinar series, and want someone else to take care of the technical aspects (managing registration system, event website, advertising the event, invitations, Zoom room management and tech support), Phage Directory is happy to partner with you and your team! Let Jessica or Jan know and we can chat about what you're envisioning and how we can help.

  523. Phil Huss (University of Wisconsin-Madison) and colleagues published a new paper in eLife describing their use of deep mutational scanning to map the functional landscape of the T7 phage receptor binding domain. Using this high-throughput, locus-specific phage engineering method, they systematically dissected the functional role of every residue in the tip domain of T7 phage RBP. This then allowed them to engineer T7 variants that were more highly active against E. coli.

  524. Janet Nale and Martha Clokie (University of Leicester) published a new perspective in Current Opinion in Biotechnology on preclinical data and safety assessment of phage therapy in humans. They emphasize that safety and efficacy data is needed to motivate clinical trials, how in vitro studies can ensure the most promising phages are developed, how human cell line studies can provide key data on human-phage interactions, and how insect and animal models can also inform phage development.

  525. Ellina Trofimova (Macquarie University, Australia) and colleagues published a new preprint describing Plaque Size Tool: an automated command-line application for plaque analysis, which can simplify and standardize phage plaque morphology measurements.

  526. Today, like all Fridays these days, it's 'Phage Phridays' in the 'Phage Club' on Clubhouse!. Time: 4PM Central (new time this week!) Theme: CRISPR and anti-CRISPR! Special guest: Joe Bondy-Denomy Hosts: Adriana Carolina Hernandez, Sabrina Green, Jean-Paul Pirnay

    Clubhouse events are casual audio-only drop-in chats; come for a few mins or stay the whole hour! Also, the new update means Clubhouse now supports Android too, not just iPhone!

    If you want to host your own room within Phage Club on Clubhouse, or suggest a theme or guest, we can make that happen! Let Jessica or Jan know if you're interested.

  527. The Africa Phage Forum is hosting its next phage webinar in its series, April 23 at 4pm GMT with special guest Dr. Jesca Nakavuma (Veterinarian and Senior Lecturer at Makerere University, Uganda), who will give a talk entitled Practical challenges and possible solutions in phage research — a question and answer session.

    Register now for this event and/or the whole series at https://apf.phage.directory.

  528. Thanks to everyone who attended one or both of the PHAVES events we hosted this week! We heard Dr. Clara Torres-Barceló talk about phages for plant pathogens (recording here!), and Dr. Randy Fish talk about phages for diabetic foot infections (recording to be shared soon!).

    Thanks also to those who attended our IBRC/Phage Directory bioinformatics seminars over the last few weeks, with Dr. Justin Clark, who told us about TAILOR's pipeline for assessing safety of therapeutic phages (recording not available at this time), and with Dr. Jason Gill, who told us all about using the Center for Phage Technology's instance of Galaxy to annotate phage genomes easily (recording here!).

    Whenever we can, we publish recordings of our events on our YouTube channel here — subscribe to get notified here: https://phage.directory/youtube!

  529. Today, like all Fridays these days, it's 'Phage Phridays' in the 'Phage Club' on Clubhouse!. Time: 4PM Central (new time this week!) Theme: CRISPR and anti-CRISPR! Special guest: Joe Bondy-Denomy Hosts: Adriana Carolina Hernandez, Sabrina Green, Jean-Paul Pirnay

    Clubhouse events are casual audio-only drop-in chats; come for a few mins or stay the whole hour! Also, the new update means Clubhouse now supports Android too, not just iPhone!

    If you want to host your own room within Phage Club on Clubhouse, or suggest a theme or guest, we can make that happen! Let Jessica or Jan know if you're interested.

  530. Hello everyone! My name is Melissa and I am a 3rd year grad student in the Biology department at the University of Alabama at Birmingham researching the mechanics of phage evolution. I am seeking obligately lytic phages that target Pseudomonas (preferably aeruginosa), E. coli or S. aureus for use in my evolutionary studies. Host bacterial strains for strain specific phage would also be appreciated.

    I would also like to connect with researchers who have experience in culturing and infecting Pseudomonas. There are some quizzical results that I would love to discuss!

    You can contact me at sfidemw@uab.edu. I appreciate all your help. Hope you have a wonderful day! Warmest Regards, Melissa

  531. We are excited to announce that we are holding a forum on Phage Therapy in the United Kingdom on the 22nd of April, 2pm-6pm BST.

    This event will be focussed on planning the pathway to phage therapy in UK, starting with testing phage therapy for bacterial UTIs resistant to antibiotics, and developing the next steps for regulations and clinical trials.

    Key speakers include Dr. David Jenkins from the British Society for Antimicrobial Chemotherapy, Prof. Krystyna Dąbrowska from the Polish Academy of Sciences, and more, discussing AMR, regulations, and previous experience with treatment.

    Register now, and save the date!

  532. We are excited to announce that we are holding a forum on Phage Therapy in the United Kingdom on the 22nd of April, 2pm-6pm BST.

    This event will be focussed on planning the pathway to phage therapy in UK, starting with testing phage therapy for bacterial UTIs resistant to antibiotics, and developing the next steps for regulations and clinical trials.

    Key speakers include Dr. David Jenkins from the British Society for Antimicrobial Chemotherapy, Prof. Krystyna Dąbrowska from the Polish Academy of Sciences, and more, discussing AMR, regulations, and previous experience with treatment.

    Register now, and save the date!

  533. UCSD's phage therapy center, IPATH, released its latest quarterly newsletter! It features an interview with David Pride, with questions like 'what is a phage library', 'how could a phage library benefit patients', and more! It also features an interview with Roland Liu, a postdoctoral researcher in the Pride lab, which talks about what brought him to IPATH and what he's working on now.

  534. Phage Club on Clubhouse (a new audio-only chat app) is back next week on Wednesday night (9PM Eastern).

    Also, Sabrina Green and Adriana Carolina Hernandez Morales have been hosting Phage Club rooms on Fridays (Phage Phridays!) at 1PM Central! (Today featured special guest Evelien Adriaenssens!)

    These are casual, fun chats that dig into new topics each week. They're designed to be drop-in, and are well suited for those who just want to listen in. Jump in for 10 mins or stay the whole hour!

    Email jessica@phage.directory if you need an invite to Clubhouse! (Currently only for iPhone).

  535. David Sáez Moreno (PhagoMed) and colleagues published a new paper on naturally-bred 'ε2-phages'. They used the Appelman's protocol to train S. aureus phages to massively broaden host range and increase virulence. Surprisingly, they showed that plaquing efficacy doesn't correlate with phage ability to control bacterial growth in suspension, so the ‘phagogram’ may not actually be the appropriate (sole) predictor of clinical phage efficacy. They also found that S. aureus wild type phages (especially Podoviridae) may be too weak/unreliable for therapy, but that using the Appelman's method is straightforward to generate non-GMO phages that work better, without needing to know much about phage genes ahead of time.

  536. We're excited to announce that we're starting a new stream of PHAVES, running parallel to our researcher-focused series. The new series will focus on phage therapy in the clinic. We'll be featuring clinicians who have treated patients with phages, but will also bring in patients and beyond. The goal is to facilitate knowledge exchange between those using phages and those interested in learning more.

    To start us off, join us April 14 at 3pm Pacific time for an interview with Dr. Randy Fish (DPM, Podiatrist in chronic wound healing and clinical research using bacteriophage in diabetic foot infections, Tacoma Diabetic Foot Clinic and PhageBiotics Research Foundation).

    At this event, Jessica will interview Randy about his work and vision when it comes to using phages to treat diabetic foot infections. We'll discuss Randy's goals to look at topical or localized use of phage to avoid the use of antibiotics, his vision on using phage to catch infections early, and his interest in testing how much and how often phage should be applied for optimal results. Small group networking to follow! Register here!

  537. We're excited to announce that we're starting a new stream of PHAVES, running parallel to our researcher-focused series. The new series will focus on phage therapy in the clinic. We'll be featuring clinicians who have treated patients with phages, but will also bring in patients and beyond. The goal is to facilitate knowledge exchange between those using phages and those interested in learning more.

    To start us off, join us April 14 at 3pm Pacific time for an interview with Dr. Randy Fish (DPM, Podiatrist in chronic wound healing and clinical research using bacteriophage in diabetic foot infections, Tacoma Diabetic Foot Clinic and PhageBiotics Research Foundation).

    At this event, Jessica will interview Randy about his work and vision when it comes to using phages to treat diabetic foot infections. We'll discuss Randy's goals to look at topical or localized use of phage to avoid the use of antibiotics, his vision on using phage to catch infections early, and his interest in testing how much and how often phage should be applied for optimal results. Small group networking to follow! Register here!

  538. As mentioned in this month's Quick Dive on phage and diabetic foot infections, Phage Directory is excited to be putting together a new series of talks (ideally the beginning of a working group) on clinical use of phage, starting with diabetic foot infections. Thanks to all who have emailed so far and expressed your interest!

    Anyone interested in giving a talk, or taking part in a panel discussion, please email me at jessica@phage.directory! Also, I'm also keen to hear from those who have treated patients with phages in settings beyond diabetic foot as well.

    To get updates when we launch the series, subscribe to PHAVES here!

    Watch past events we've hosted on YouTube here.

  539. Acknowledging the importance of genomic characterization of phages to understand their biology and for their safe use in therapeutics and other applications, International Bacteriophage Research Consortium (IBRC) and Phage Directory, USA are co-hosting a series of Phage Bioinformatics Webinars.

    Our next guest is Dr. Justin Clark, Lead Data Scientist and Co-founder of TAILΦR, a Baylor College of Medicine bacteriophage initiative. Originally trained as a wet-lab molecular biologist, Justin has studied a variety of pathogenic bacteria over the last decade at both the bench and the computer. His current research focuses on both therapeutic phage uses and comparative genomics of ESKAPE pathogens.

    We are very pleased to invite you to the webinar on 30 March, 2021 at 8.30 pm Indian Standard Time (IST) / 10.00 am CST. We look forward to your participation. Register using the link.

    Check out our new Bioinformatics resources page here, where we're posting materials on talks in this series. More to be added as we go! The companion #phage-bioinformatics Slack channel is now retired. Retirement notice.

  540. Phage Club on Clubhouse is back next week on Wednesday night (9PM Eastern). The theme will be 'Therapeutic Phage on Trial: Burden of Proof in Genomic Analysis', which will be an 'after party' after Justin Clark's seminar on Tuesday March 30!

    Also, Sabrina Green and Adriana Carolina Hernandez Morales have been hosting Phage Club rooms on Fridays at 1PM Central! Today featured special guest Steffanie Strathdee!

    And thanks for everyone who came out this past Wednesday, where we talked with Dr. Gina Suh from Mayo Clinic about how she finds phages for her patients. We've recorded it if anyone is interested!

    Email jessica@phage.directory if you need an invite to Clubhouse! (Currently only for iPhone).

  541. Greetings to all senior phage scientists. I am currently conducting phage research and seeking your collaboration in order to characterize the isolated phages using TEM. Kindly assist me to achieve this task by highlighting your requirements for TEM services including pricings. I am Noutin Fernand Michodigni, PhD Student in Molecular Biology and Biotechnology, Pan African University, noutin.fernand@students.jkuat.ac.ke.

  542. Graham Hatfull and Steffanie Strathdee are seeking information about nebulizers that have been tested in phage therapy. See Steffanie's tweet thread here and get in touch with her or Graham if you'd like to help. "#Phage tweeps: @GHatfull & @IPATH are looking for a list of performance for nebulizers used for #phagetherapy. i.e. which ones have/have not been used, methods for each, phage survival after nebulization & what clinical outcomes exist. (This would make a great paper too!)"

  543. Steven Sutcliffe (McGill University), Michael Shamash and colleagues published a new paper in Viruses showing how common medications lead to prophage induction in human gut bacteria. They tested anti-inflammatory, chemotherapy, mild analgesic, cardiac, and antibiotic drug classes, and found that bacteria were inhibited by most of these drugs, and prophages were induced in half of those cases. They even saw that induction was species-specific (inducing prophages in Clostridium beijerinckii, Bacteroides caccae, and Bacteroides eggerthii)!

  544. Phage has made the Washington Post! The article, written by Daphne Miller, a clinical professor at UCSF, describes how most viruses around us are benign, while some are lifesaving. She interviews Saima Aslam, Paul Turner, and Ken Cadwell about their thoughts and work in the space. Perhaps a good one to share with your friends and family!

  545. Phage Directory (& friends) are now on Clubhouse! This is a new app for drop-in audio-only discussions around a topic. It's still only for iPhone users, and requires an invite, so ask around (or ask us!) if you need one. We've now hosted two Wednesday night events (9PM Eastern) and will host another this coming Wed, March 24 at the same time. The topic will be on navigating phage therapy in the US via the FDA eIND pathway, along with what to say when approached by a prospective patient for phage therapy. Sign up for "Phage Club" within clubhouse to get notified about future events!

  546. Fatma Abdelrahman (Zewail City of Science and Technology, Egypt) has launched a new webpage for Women in Phage in collaboration with Phage Directory. The new organization aspires to create a community where all phage scientists — and particularly female scientists — can gather to share their research experience and discuss their findings. It will also support microbiology undergraduate students with an avid interest in the field by connecting them with researchers and professors from all over the globe through bi-yearly conferences and regular webinars. Become a member!

  547. Enea Maffei (University of Basel) and colleagues published a preprint on their systematic exploration of a new panel of 66 Escherichia coli phages, which is now available for the community. They designed the collection to be used as a reference collection to accelerate phage research. They've extensively characterized the phages phenotypically and genotypically, including essential host receptors, sensitivity to defense systems, and host range. What a fantastic initiative!

  548. Brandon Berryhill (Emory University) and colleagues published a research article exploring potential efficacy of a phage seemingly ideal for combined phage and antibiotic treatment. Although the phage PYO^Sa is able to kill S. aureus at high rates, and the host was unlikely to generate receptor site mutants, they uncovered issues that should be addressed before employing this phage clinically. The phage does not completely clear its host; rather, small colony variants emerged, which led to a return to normal bacterial densities.

  549. Later this month, leading drug developers, academics and clinical researchers will come together at the 3rd Bacteriophage Therapy Summit to address their translation challenges, from characterization of phages through to clinical development. Join them online to strengthen your product development pipelines and forge new collaborations to unlock the full potential of bacteriophage therapeutics. Use code PD10 to get 10% off!

  550. PHAVES #13 will be a seminar with Prof. Jonathan Iredell, MBBS, PhD of the Westmead Institute for Medical Research and University of Sydney on Wed, March 10 at 8AM AEDT (Tues, March 9 at 4PM Eastern Time/10PM CET). He will give a talk entitled Phage Therapy: The Australian Experience. Small group networking to follow! Register here!

  551. The Texas Medical Center (TMC) Digestive Diseases Center 12th Frontiers in Digestive Diseases Symposium “Phages, Viruses, and Digestive Diseases” will take place Saturday, March 6, 2021, 8 am CST – 1:45 pm CST. Event Organizers: Mary K. Estes, Ph.D. and Anthony Maresso, Ph.D. Register here.

  552. Thanks to all who attended 2021 Phage Futures Congress last week! The conference conducted a Young Researchers Poster Competition, and announced the four finalists on the last day.

    Congratulations to:

    • Carmen Gu Liu (Baylor College of Medicine) "Lighting Viral Dark Matter: Revealing Earth's Cryptic Genosphere Through Environmental Sampling"
    • Matti Ylanne (University of Helsinki) “Phage therapy treatment of chronic sinusitis caused by Pseudomonas aeruginosa”,
    • Meaghan Castledine (University of Exeter) “Parallel phage resistance – virulence trade-offs during clinical phage therapy and in vitro”
    • Stephanie Lynch (La Trobe University) “Phage therapy for Staphylococcus pseudintermedius infections in canines.”

    Everyone, even those who didn't attend the conference, is invited to attend the free webinar 10th March 2pm EST, where these four winners will present!

  553. We are in search for Pseudomonas aeruginosa phage PaP3, it was described by Fuquan Hu’s lab but myself and Prof. Gino Cingolani haven’t received a reply from them. Hope you can help us find this prophage or a similar one to this and LUZ24 (we required a temperate phage). Thank you! Contact details: rodrigo.ibarrachavez@bio.ku.dk.

  554. Luis Camarillo-Guerrero (Wellcome Sanger Insititute) and colleagues published a paper on the prevalence of viral diversity in the human gut, along with a new Gut Phage Database (142,809 non-redundant gut phage genomes from 28,060 metagenomes!). They confirmed distribution of huge viral clusters on different continents featuring p-crAssphage characteristics, corroborating the human lifestyle-associated global variation in the gut phageome.

  555. Few have explored how phages affect bacteria associated with winemaking. Cécile Philippe (University of Bordeaux, France) and colleagues published a new paper in Frontiers in Microbiology on the characterization of the first virulent phages infecting Oenococcus oeni, the lactic acid bacterium considered 'the Queen of the Cellars'. Analysis of their genomes shows these phages have mosaic genomes unique among lactic acid bacteria-infecting phages.

  556. Varun Rakeshbhai Bavda (IISER, India) and colleagues published a new article on the molecular properties of mycobacteriophage D29 Holin, with an emphasis on potential for holin engineering. They demonstrated crucial amino acid regions for holin-mediated toxicity, as well as how amino acid substitution in the C-terminal region renders the holin non-toxic. They have also engineered a holin which shows higher toxicity in some strains.

  557. PHAVES #13 will be a seminar with Prof. Jonathan Iredell, MBBS, PhD of the Westmead Institute for Medical Research and University of Sydney on Wed, March 10 at 8AM AEDT (Tues, March 9 at 4PM Eastern Time/10PM CET). He will give a talk entitled Phage Therapy: The Australian Experience. Small group networking to follow! Register here!

  558. Good things…. come to those who wait. It is now evident that corona will continue to disrupt our plans to share science and meet at VoM Portugal yet again this year. The local organizers of the upcoming VoM conferences and the ISVM board have made the decision to move the original 2020 VoM in Guimarães, Portugal to 2022 and the originally scheduled 2022 meeting in Tbilisi, Georgia to 2023.

    Furthermore, we’re excited to announce that ISVM/VoM is going ‘down under’ in 2024, with a conference hosted in beautiful Cairns, Australia. We look forward to ‘Expanding our viral frontiers’ at that meeting.

    So, besides the iVoM lectures and other online opportunities being made available to us this year, we’ll be ready for fully vaccinated conferences: 18th – 22nd July 2022, Guimarães, Portugal 2nd – 7th July 2023, Tbilisi, Georgia 15th – 19th July 2024, Cairns, Australia

    We look forward to seeing you again!

    On behalf of the ISVM executive board, Rob Lavigne (president)

  559. We are excited to announce that the Viruses of Microbes 2024 meeting will be held in Cairns, Australia! Being situated on the shores of the Great Barrier Reef and surrounded by the oldest rainforest on Earth, Cairns will host a truly unique VoM experience. This also marks the first time that the VoM conference series will take place outside of Europe.

    The theme for VoM 2024 will be ‘Expanding our viral frontiers’, which references both the expansion of the VoM conference series to Australia and a focus on the next frontiers for viruses of microbes research. Our local organising committee is led by Dr. Jeremy J. Barr (Monash University) and includes; A/Prof. Ruby CY Lin (Westmead Institute), Dr. Lucy Furfaro (University of Western Australia), Dr. Karen Weynberg (The University of Queensland), and Dr. Paul Jaschke (Macquarie University).

    Our meeting will be held at the Cairns Convention Centre from July 15th – 19th, 2024. We are excited to host you all in beautiful Cairns, Australia and hope to see you all ‘down under’ soon!

  560. The International Bacteriophage Research Consortium (IBRC) and Phage Directory are co-hosting a series of Phage Bioinformatics Webinars.

    The second speaker in the series will be March 2 at 9.00 pm IST / 7.30 am PST, with a talk by Katelyn McNair, a Research Scholar at the University of California, Irvine and San Diego State University, USA. Katelyn has developed the software PHANOTATE, the first gene finder specifically designed for phage genome annotation. Also, of immense interest to phage researchers, is her previous tool, PHACTS, which computationally predicts whether a phage is temperate or virulent. Register here!

    The companion #phage-bioinformatics channel in the Phage Directory Slack community is now retired. Retirement notice.

  561. phageSuisse is hosting its second webinar on March 2nd at 20h00 CET on "Temperate bacteriophages and the evolution of the Staphylococcus aureus lineage 398" by Dr. Floriane Laumay from Geneva, Switzerland. Register here!

  562. Locus Biosciences announced the completion of a phase 1b trial of CRISPR-Cas3-enhanced phage targeting E. coli in urinary tract infections. The trial met all the endpoints, and represents the first randomized, placebo-controlled trial using recombinant phage therapy. The company is advancing into Phase 2 trials to prove the efficacy of recombinant phage in precisely removing specific bacteria from the human body without harming any other bacteria in a patient’s microbiome.

  563. Shayla Hesse (National Cancer Institute, USA) and colleagues published a new paper showing that mutations in genes coding for cell surface structures impair adsorption of phages in multidrug-resistant Klebsiella pneumoniae. They concluded that phage cocktails targeting different phage receptors decrease the incidence of resistance, while multiple phages targeting the same receptor increases the chances of resistance development.

  564. [Date change!] The sixth iVoM event will be Thursday, Mar 4, 11AM GMT (note earlier time than usual too!), and the theme will be "Biotechnology applications in health care".

    It will feature talks by: Laurent Debarbieux: Phages (in)action in the gut Krystyna Dabrowska: A study that went wrong: phage engineering and phage pharmacokinetics Tristan Ferry: Phage therapy experience in France in the field of Bone and Joint infection

    Chairs: Jeremy Barr Joana Azeredo

    Register at https://ivom.phage.directory.

    Also, the iVoM image contest deadline has been extended to March 2!

  565. Next week is Phage Futures 2021 (Feb 24-26)! Jessica and Jan of Phage Directory will be there, along with two dedicated social media assistants, Curtis Hoffmann and Atif Khan, to help keep you all in the loop via Twitter! (Another of our volunteers, Steph Lynch, will be in attendance too!)

    And on day 1 of the conference, Jessica will moderate a panel on translation of in vitro phage results to in vivo, and understanding phage pharmacology. Panelists will be Dr. Paul Turner, Dr. Bob Blasdel, and Dr. Martha Clokie. Beyond this there will be tons more — hope to see many of you there!

    Register and get 10% off with code PD10!

  566. Registration is open for (online) VEGA, Viral EcoGenomics & Applications, 2021. Hosted by the JGI, the goal of this series of online seminars is to bring together a “Viral Ecogenomics” community to foster discussion on how to best capture and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward innovative biotechnological and industrial applications. This will be a series that runs through April and May.

  567. [Date change!] The sixth iVoM event will be Thursday, Mar 4, 11AM GMT (note earlier time than usual too!), and the theme will be "Biotechnology applications in health care".

    It will feature talks by: Laurent Debarbieux: Phages (in)action in the gut Krystyna Dabrowska: A study that went wrong: phage engineering and phage pharmacokinetics Tristan Ferry: Phage therapy experience in France in the field of Bone and Joint infection

    Chairs: Jeremy Barr Joana Azeredo

    Register at https://ivom.phage.directory.

    Also, the iVoM image contest deadline has been extended to March 2!

  568. A year ago on Twitter, Jeremy Barr (Monash University) shared a picture of several 40-year old phage stocks, and asked "what should we do with them?" People said 'check titre!' 'get WGS' and 'are they the same as the stock phages we've all been using?' Now, his lab has published the results in a new paper in MSystems (led by Dinesh Subedi) showing temporal stability and genetic diversity of 48-year-old T-series phages. Check out Jeremy's Twitter thread for an explainer!

  569. Quentin Lamy-Besnier (Institut Pasteur) and colleagues have created a Viral Host Range database, a tool that they built to gather, analyze and search experimental host-range information. They hope this will help leverage the experimental host-range data produced over the years by the phage community. The phage community is invited to contribute!

  570. Analysis of phage genomes replete with hypothetical genes is a challenge. Given the importance of genomic characterization of phages to understand their biology and for their safe use, International Bacteriophage Research Consortium (IBRC) and Phage Directory are co-hosting a series of Phage Bioinformatics Webinars. This will be a beginner-focused series aimed at helping phage researchers get up to speed on phage genome characterization, including current practices, tools and tips, and will be taught by invited guest speakers.

    The first webinar will be by Dr. Deborah Jacobs-Sera from the Hatfull Lab (University of Pittsburgh, USA), developer and overseer of phage discovery and genomics platforms for advancing science education, such as PHIRE and SEA-PHAGES. She'll give a talk on “Genomic Annotation and Comparative Bioinformatic Analysis of Actinobacteriophages”, and will include an overview of tools such as DNA Master, GeneMark, Glimmer, tRNA Scan SE, Aragorn, HHPred.

    We're pleased to invite you to this series, beginning on 16 February, 2021 at 6.30 pm IST/8 am EST. Register for the first event here.

    As a companion to this series, we launched a #phage-bioinformatics channel for questions and community discussion. The Phage Directory Slack community is now retired. Read the retirement notice.

  571. Phage enthusiasts need to take a 3-min break and watch this awesome student-made video breaking down phage lysogeny and the 'Piggyback the winner' hypothesis, set to the tune of a Justin Timberlake song... (no sound until around 0:26; then the music starts). Source: Ben Temperton's BIO3099 class (University of Exeter).

  572. Viruses has an upcoming Special Issue on 'State-of-the-Art Phage Therapy Development in Europe'. They are looking for research articles, review articles and short communications related to: experimental and applied phage therapy; host–pathogen interactions and co-evolution; phage therapy in animal models; principle for selection and construction of bacteriophages for therapy; immune response to phage therapy; case studies; clinical trials. The deadline is the 31st of July 2021.

  573. Fatma Abdelrahman (Zewail City of Science and Technology, Egypt) and colleagues from 7 countries (Egypt, India, Nigeria, Australia, China, Pakistan, Spain), many of them early career researchers, published a new review in Antibiotics on phage lysins. We want to shine special light on this paper because it represents 12 authors from 7 countries who collaborated online during the pandemic to take this from start to finish. We've watched this group gather co-authors on Slack and What's App, and work together to get this published. We think this paints a great picture of how global and how collaborative the phage community is, and hope to see more like this!

  574. As promised, the 24th biennial Evergreen International Phage Meeting will take place the first week of August 2021!

    Assuming it is safe to do so, the conference will be hosted in person on the Evergreen campus, in the dorms, as done in the past. In-person attendance will be limited (max 100). Registration fees will be kept low similar to past meetings, just enough to pay for room and board (around $450 for students and postdocs, $550 for senior people). Talks will be recorded and made available online, likely for a small fee. Depending on speaker preference and experience, talks will range from 10 min to 25 min long.

    For those interested in presenting, either online or in person, please reach out to Betty Kutter at kutterb@evergreen.edu. More details on registration and themes will soon follow.

  575. The sixth iVoM event will be Thursday, February 18, 11AM GMT (note time change!), and the theme will be "Biotechnology applications in health care". It will feature talks by: Laurent Debarbieux: Phages (in)action in the gut Krystyna Dabrowska: A study that went wrong: phage engineering and phage pharmacokinetics Tristan Ferry: Phage therapy experience in France in the field of Bone and Joint infection

    Chairs: Jeremy Barr Joana Azeredo

    Register at https://ivom.phage.directory.

  576. Dear iVoM participants, If you've attended at least two iVoM events, you're invited to participate in a contest! The contest aims at having the audience feedback regarding the iVoM: Viruses of Microbes 2020 Webinar Series: Take a walk on the VoM side and expectations for the next Viruses of Microbes - the latest conquests on viruses of microbes conference. This must be done in a concise, clear, creative and attractive way, through the presentation of an image.

    The winner will have the image published in the abstract book and a free registration for the next Viruses of Microbes Conference. See https://ivom.phage.directory for details.

    Deadline for submission is Feb 16, so get your submissions in quickly! Winner will be announced at the last iVoM on Feb 18.

  577. Dear iVoM participants, If you've attended at least two iVoM events, you're invited to participate in a contest! The contest aims at having the audience feedback regarding the iVoM: Viruses of Microbes 2020 Webinar Series: Take a walk on the VoM side and expectations for the next Viruses of Microbes - the latest conquests on viruses of microbes conference. This must be done in a concise, clear, creative and attractive way, through the presentation of an image.

    The winner will have the image published in the abstract book and a free registration for the next Viruses of Microbes Conference. See https://ivom.phage.directory for details.

    Deadline for submission is Feb 16, so get your submissions in quickly! Winner will be announced at the last iVoM on Feb 18.

  578. The sixth iVoM event will be Thursday, February 18, 11AM GMT (note time change!), and the theme will be "Biotechnology applications in health care". It will feature talks by: Laurent Debarbieux: Phages (in)action in the gut Krystyna Dabrowska: A study that went wrong: phage engineering and phage pharmacokinetics Tristan Ferry: Phage therapy experience in France in the field of Bone and Joint infection

    Chairs: Jeremy Barr Joana Azeredo

    Register at https://ivom.phage.directory.

  579. The Center for Microbiome Science at Ohio State University is hosting a Microbiome Informatics webinar series, running from March to May 2021. Register here! This series represents a first phase effort to digitize 7 years of a hands-on informatics training course in this space, with a focus that goes beyond 16S-based studies to leverage the power of shotgun sequencing. Each 1.5 – 2 hour webinar will provide a brief concept introduction, and then hands-on practical exercises designed to provide cutting-edge first phase of training in Microbiome Informatics to empower researchers to better understand microbes and their viruses in complex communities.

  580. As promised, the 24th biennial Evergreen International Phage Meeting will take place the first week of August 2021!

    Assuming it is safe to do so, the conference will be hosted in person on the Evergreen campus, in the dorms, as done in the past. In-person attendance will be limited (max 100). Registration fees will be kept low similar to past meetings, just enough to pay for room and board (around $450 for students and postdocs, $550 for senior people). Talks will be recorded and made available online, likely for a small fee. Depending on speaker preference and experience, talks will range from 10 min to 25 min long.

    For those interested in presenting, either online or in person, please reach out to Betty Kutter at kutterb@evergreen.edu. More details on registration and themes will soon follow.

  581. Diana Pires (University of Minho, Portugal) and colleagues published a new Scientific Reports paper describing the design and assembly of synthetic Pseudomonas aeruginosa phages made by knocking out up to 48% of a phage's genes of unknown function. In vitro and in vivo studies of knock-out phages showed similar properties with wildtype counterparts, suggesting this strategy could be used to make space in the phage genome for genes of interest that can enhance treatment.

  582. Christine Thompson, a US pharmacy student keen to learn more about bringing phage therapy into the field of pharmacy, published an interview for IDStewardship.com with Phage Directory's co-founder, Jessica Sacher. They discussed recent phage therapy progress and challenges, phage antibiotic synergism, key targets of phage therapy, the use of phages in hospitals and against COVID-19, and the ultimate goal of the Phage Directory website.

  583. PHAVES #12 will be a seminar with Dr. Betty Kutter of the Evergreen State College on Tues, Feb 9 at 8AM Pacific Time / 11AM Eastern Time. Title: Phages as a teaching tool, and stories from 60 years of phage. Small group networking to follow! Register here!

  584. PHAVES #12 will be a seminar with Dr. Betty Kutter of the Evergreen State College on Tues, Feb 9 at 8AM Pacific Time / 11AM Eastern Time. Title: Phages as a teaching tool, and stories from 60 years of phage. Small group networking to follow! Register here!

  585. My name is Farhad Afrasiabi. Ph.D. student in the Department of Microbiology at Hamadan University of Medical Sciences, IRAN. I am interested in working on phage. I am currently working on a joint project to do my doctoral thesis on phage. Of course, I've also ready to work on any project that you want to do. Please email me at afrasiabifarhad@gmail.com to discuss opportunities.

  586. Jingen Zhu (The Catholic University of America, Washington, DC) and colleagues published a new preprint describing the use of CRISPR-engineered phage T4 as a universal platform to produce vaccines against SARS-CoV-2. They found high levels of antibody and T cell-mediated immune response when they tested the construct on rabbit and mouse models. Beyond SARS-CoV-2, this platform has the potential to generate cost-effective and efficient vaccine candidates against any future pathogen.

  587. RATIO PRESENTS: BACTERIOPHAGES: Join us on 2nd Feb when we will talk about merciless killers – the bacteriophages, small biological machines designed to kill bacteria.

    This event will give an overview of the main principles of the bacteriophage ecology and discuss the implications in the phage therapy.

    About the speaker: Andrey Letarov is the head of the laboratory of Microbial viruses at Winogradsky Institute of Microbiology RC Biotechnology RAS, Moscow, Russia. He is also a professor at Virology department of the faculty of biology of Lomonosov Moscow State University. During his whole scientific career he was studying various aspect of bacteriophage biology, including organization and folding of phage proteins, bacteriophage evolution, bacteriophage diversity and ecology.

  588. PhageAI 0.7.2 has been released!

    What's new: Life cycle classifier v1.3 to distinguish between virulent and temperate phages (accuracy benchmark); PhageAI as free Python package on GitHub and PyPI; Duplicate samples detection alert in phage display view; "History" tab in phage display view with historical predictions, and more!

    PhageAI still offers: a possibility to upload your phage genomes and getting predictions of a lifecycle in less than a few seconds; creating projects and sharing it among your collaborators; building your private repository of bacteriophages; sharing your feedback concerning model predicitions with scientific community; 3D interactive plot tools.

    Sign in to PhageAI and feel free to rate our efforts on your social media accounts using #PhageAI tag. You can follow us on Twitter @PhageAI to be up to date with the PhageAI roadmap.

  589. We had a great time kicking off PHAVES for 2021 this week — thanks to everyone who attended! We had an awesome casual chat with phage researchers around the world, heard about what people are working on, what they're proud of from 2020, and what they're excited about for next year! The new casual format was a big hit, so we'll likely be hosting more of these this year.

    Let us know your thoughts, or if you have suggestions on other ways we can experiment with the virtual medium, or would like to recommend a speaker for this year!

    Register for the PHAVES series here.

  590. Fantastic turnout for the first Africa Phage Forum webinar this week — thanks to the ~70 attendees who were there, and thanks to Dr. Paul Turner who gave a thought-provoking talk and extensive Q&A!

    Sign up for future Africa Phage Forum events here. Next speaker: Dr. Evelien Adriaenssens on Feb 15, who will speak about: Basics of phage genome annotation and classification - how to get started.

    There will soon be an Africa Phage Forum YouTube channel where talks will be posted — stay tuned! Also, join their What's App to keep up.

  591. The Africa Phage Forum is hosting its next phage webinar in its series, Feb 15 at 4pm GMT / 11am Eastern with special guest Dr. Evelien Adriaenssens, who will give a talk entitled Basics of phage genome annotation and classification - how to get started. Register now for this event and/or the whole series at https://apf.phage.directory.

  592. The Africa Phage Forum is hosting its next phage webinar in its series, Feb 15 at 4pm GMT / 11am Eastern with special guest Dr. Evelien Adriaenssens, who will give a talk entitled Basics of phage genome annotation and classification - how to get started. Register now for this event and/or the whole series at https://apf.phage.directory.

  593. The Africa Phage Forum is hosting its next phage webinar in its series, Feb 15 at 4pm GMT / 11am Eastern with special guest Dr. Evelien Adriaenssens, who will give a talk entitled Basics of phage genome annotation and classification - how to get started. Register now for this event and/or the whole series at https://apf.phage.directory.

  594. The fifth iVoM event will be Thursday, January 21, 4pm GMT, and the theme will be "Agro-food, veterinary and environmental biotechnology applications".

    It will feature talks by: Sam R. Nugen - Department of Food Science and Technology, Cornell University Danish J. Malik - Chemical Engineering Department, Loughborough University Ana Oliveira - Centre of Biological Engineering, University of Minho

    Chairs: Mathias Middelboe - Department of Biology, Marine Biological Section, University of Copenhagen Lone Brøndsted - Department of Veterinary and Animal Sciences, University of Copenhagen

    Register for this event and/or the whole series at https://ivom.phage.directory.

  595. PHAVES #11 will be a casual mixer to kick off the new year! We'll get together on Zoom January 12 at 11:00 AM Eastern. We'll start off with a bit of an "open mic" / "show and tell", where attendees will have the option to share something they're either proud of from last year or excited to be working on for the coming year. Then we'll do a few sets of breakout rooms so we can all meet some new faces in smaller-group settings!

    Register for this event and/or the whole series at https://phaves.phage.directory.

  596. The Africa Phage Forum is hosting a new phage webinar series, starting Jan. 14 at 11AM EST (4PM GMT) with special guest Dr. Paul Turner. Dr. Turner will give a talk entitled 'From the environment to bedside: understanding the basics of phage therapy research'. Phage Directory is proud to partner with APF to bring this webinar series to the broader phage community!

    Register for this event and/or the whole series at https://apf.phage.directory.

  597. The fifth iVoM event will be Thursday, January 21, 4pm GMT, and the theme will be "Agro-food, veterinary and environmental biotechnology applications".

    It will feature talks by: Sam R. Nugen - Department of Food Science and Technology, Cornell University Danish J. Malik - Chemical Engineering Department, Loughborough University Ana Oliveira - Centre of Biological Engineering, University of Minho

    Chairs: Mathias Middelboe - Department of Biology, Marine Biological Section, University of Copenhagen Lone Brøndsted - Department of Veterinary and Animal Sciences, University of Copenhagen

    Register for this event and/or the whole series at https://ivom.phage.directory.

  598. Pherecydes Pharma intends to list on the Euronext Growth® Market in Paris, a European equity trading market designed for small to medium-sized firms. Pherecydes Pharma has developed a portfolio of phages against Staphylococcus aureus, Pseudomonas aeruginosa, and Escherichia coli, and will be pursuing an individualized treatment strategy which includes screening a large number of phages and selecting the efficient ones using a phagogram.

  599. David Lebeaux (Université de Paris) and colleagues published the first demonstration of phage therapy in a lung-transplanted cystic fibrosis patient infected with pandrug resistant A. xylosoxidans. They successfully carried out two rounds of therapy on a 12-year-old patient with complex airway colonization of eight distinct types of phage-resistant and -susceptible strains. The outcome: improved respiratory conditions, low airway colonization, and no further recolonization after two years of therapy.

  600. Julie Stenberg Pedersen (University of Copenhagen, Denmark) and colleagues published a paper on the isolation and characterization of a novel phage Jarilo, which is active against the plant pathogen Pectobacterium carotovorum that causes soft rot disease. Numerous methodologies like bioinformatics and host range analysis confirmed the presence of endonucleases, multiple conserved genes, and Jarilo's ability to infect across its host species.

  601. The Africa Phage Forum is hosting its first webinar, with special guest Dr. Paul Turner, who will give a talk entitled 'From the environment to bedside: understanding the basics of phage therapy research'. Save the date for Jan. 14 at 11AM EST (4PM GMT). Registration details available soon!

  602. In the lead up to the virtual Global Phage Futures Congress February 24-26 (register here), Dr Shawna McCallin, Clinical Coordinator, Balgirst University Hospital will provide a free webinar Jan 19 at 12:00 PM Eastern on establishing a database for phage therapy. Attend to understand how international collaboration can help to reduce reporting of positive bias and how, through involvement, members of the phage community can help to improve transparency, clinical trial design and patient safety.

    Dr McCallin will also attend the virtual Global Phage Futures Congress, where she will chair a live discussion with experts including Dr Gina Suh, Dr Ben Chan, Dr Jon Iredell, and Dr Graham Hatfull on the topic: ‘Success or failure in compassionate use; why does phage therapy not always succeed?’

  603. The Phage Team Uganda comprising of scientists, researchers and students from various backgrounds, is coming together to contribute to world Phage community in discovering the Phage potential for a better world. Follow our work via @PhagesUG on Twitter!

  604. Kristen LeGault (University of California, Berkeley) and colleagues published a new preprint showing how temporal shifts in antibiotic resistance elements govern virus-pathogen conflicts in Vibrio cholerae recovered from clinical samples. They studied Vibrio cholerae phage-host arms race dynamics over time (using clinical samples taken across 3 years!), and learned more about the role of integrative conjugative elements (ICEs) in conferring phage defense and dissemination of antibiotic resistance.

  605. Anna Dragos (Technical University of Denmark) wrote a blog post for Nature Microbiology entitled 'Breaking bad of prophages during lab evolution - from strange observation to revelation'. She talks about how her group noted an intriguing pattern across series of evolution experiments with B. subtilus, and what they've gone on to learn about prophages as a result!

  606. Animals in the wild have learned to live with 'their' viruses, but humans are still learning. Harald Brussow (KU Leuven) has described in a new 'crystal ball' article how phages have dominated all natural habitats, and has provided a unique comparison of the use of prophages by bacteria and domesticated viruses by wild animals. He emphasizes the strategy adopted by different animal viruses, including the novel coronavirus, when humans interfered in their natural habitat.

  607. The International Society for Viruses of Microorganisms has announced their newly elected executive board members for 2021-2022!

    Congratulations to Rob Lavigne (President), Zuzanna Drulis-Kawa (President-elect), Andrew Millard (Vice-President), Paul Hyman (Treasurer), Shawna McCallin (Secretary/Information Officer), Aleksandra Petrovic Fabijan (Assistant Secretary), and Jessica Sacher (Private Partnership Officer).

    The ISVM has also named its Staff functions for the year: Stephen Abedon (Web Developer) and J. Rodney Brister (Membership Secretary).

  608. The 23rd Congress of the International Society for Aerosols in Medicine (ISAM) will be held in Boise, Idaho from 22nd to 26th May 2021.

    The scientific agenda is focusing on the current understanding of pulmonary disease, viral transmission/risk mitigation, environmental aerosols, advancing imaging techniques, device/formulation strategies, emerging aerosol therapies and technologies with a focus on phages for respiratory applications.

    From Dr. Reinhard Vehring, University of Alberta Prof. of Materials Engineering: "The conference is visited by many experts and practitioners in the respiratory field, so presenting phage therapy and development talks or posters there will reach an audience that could benefit greatly from an introduction to the potential of pulmonary or nasal phage therapy. I also think that an intellectual exchange between phage biologists and experts in respiratory drug delivery could be very beneficial for successful phage therapy via the respiratory route."

  609. Eleanor Townsend and Eleanor Jameson (University of Warwick) are editing a special issue titled “Phage-Host Interaction in the Gut Microbiome and Their Impacts on Human Health and Disease” in MDPI’s International Journal of Environmental Research and Public Health. The special issue focuses on the understudied regulatory interactions of phages with gut microbiota and the impact of human gut phageome on human health and diseases with the ultimate aim of bringing up phages for human health benefits.

  610. UC San Diego has detailed the journey to recovery of another patient who has benefitted from the use of phage therapy. The case involved Maria Madrigal, a polycystic kidney disease (and kidney transplant) patient who suffered from recurrent multidrug resistant Escherichia coli infections, who was treated at UCSD's IPATH, again suggesting the promise of phage therapy after conventional antibiotic treatment proves inadequate. Press Release | YouTube video.

  611. The fourth iVoM event will be Thursday, December 17, 7pm GMT, and the theme will be "Virus-host interaction: molecular mechanisms".

    Talks:

    • New discoveries on the immune system of bacteria — Rotem Sorek
    • The regulation and activity of Class 1 CRISPR-Cas systems — Peter Fineran
    • Molecular hijacking of Pseudomonas — Rob Lavigne

    Chairs: Karen Maxwell and Julia Frunzke

    Register for the whole series or for individual events at https://ivom.phage.directory.

  612. My name is Tom Ireland and I'm a science writer based in the UK working on a popular-science book about phages. Under contract with a major publisher, the book aims to bring the wonder of phages to a mass audience, telling the fascinating history of phage science and exploring what phages can do for us in science, medicine and the environment.

    I am currently making contact with phage scientists from across the world as part of my research, and I want to ask anyone who wishes to be featured to get in touch with me. I'm really keen to get to know lots of phage scientists, visit lots of phage labs and follow lots of different aspects of phage work in the course of my research. Please contact me at tomjireland@gmail.com.

  613. The fourth iVoM event will be Thursday, December 17, 7pm GMT, and the theme will be "Virus-host interaction: molecular mechanisms".

    Talks:

    • New discoveries on the immune system of bacteria — Rotem Sorek
    • The regulation and activity of Class 1 CRISPR-Cas systems — Peter Fineran
    • Molecular hijacking of Pseudomonas — Rob Lavigne

    Chairs: Karen Maxwell and Julia Frunzke

    Register for the whole series or for individual events at https://ivom.phage.directory.

  614. Two upcoming phage webinars organized by the Mayo Clinic College of Medicine and Science:

    1. From Petri Dish to Patient: Mycobacteriophages and Their Therapeutic Potential (December 8): Register here.
    2. Phage and Antibiotics: Induction of an Antibacterial Type 7 Secretion System in Enterococcus faecalis (December 16): Register here.
  615. Dr. David Pride (IPATH, UCSD) wrote a great Scientific American article on the complexity of viruses and the human body. He talks about the tricky tasks of mapping where they are and how they spread, and managing the bad ones while exploiting the good ones. Great for sharing with your families who are undoubtedly asking you more about your work on viruses this year than ever before...

  616. (POSTPONED TO 2021) Save the date for the next rendition of PHAVES, a seminar with Dr. Jonathan Iredell, MD of the Westmead Institute for Medical Research and University of Sydney on Wed, Dec 16 at 8AM AEDT (Tues, Dec 15 at 4PM Eastern Time/10PM CET). He will give a talk entitled Phage Therapy: The Australian Experience. Small group networking to follow! Register here!

  617. Ameneh Khatami (University of Sydney) and colleagues published a new preprint showing therapeutic monitoring of the host-bacterium-phage interaction in a child. They describe how they treated a 7-year-old with a chronic osteoarticular Pseudomonas infection, and how monitoring phage and bacterial kinetics and the human host response allowed them to adjust dosing early on, leading to a strong therapeutic effect within two weeks. Phage Directory is proud to have helped source phages for this effort, and especially proud of the 12 labs who responded to our alert last summer.

  618. Thanks so much to the labs who reached out in response to our request for Serratia phages last week. In just a few days, the strain was shipped out to the first set of labs for testing. A few days after that, an active phage was found (by Ronen Hazan's team at the Israel Phage Bank!) Sadly, the patient passed away this week, before they could receive the phage. Nonetheless, this formidable teamwork is worth celebrating, and we are proud of our phage community! Sign up to receive future urgent phage alerts here.

  619. Good day! I am a 3rd year Medical Technology student from the Philippines and we are currently looking for MS2 Escherichia coli bacteriophage for our thesis project. I hope you can help me to look for the above said bacteriophage sample. Thank you so much. Email: cgeordette@gmail.com | FB/IG: @geordetteeve

  620. The African Phage Forum is a new collaborative network of African phage researchers to promote and sensitize phage research in Africa, created by Dr. Emmanuel Nnadi, Dr. Rita Nakayinga, and Dr. Juliah Khayeli. They aim to motivate and mentor phage research students in African universities, share protocols, encourage collaboration, and work to advance phage research and policy implementation at national levels. Join the What's App group here!

  621. Ruby Lin (Wesmead Institute for Medical Research, Australia) and colleagues published a Nature Microbiology blog post on their work toward establishing an Australian Phage Network. This post follows up on their Nature Microbiology paper from earlier this year, which described their completed IV phage therapy case series — here they describe their effort to translate this knowhow into building a national phage therapeutics consortium in Australia.

  622. Fernando Gordillo Altamirano and Jeremy Barr (Monash University) published a new perspective in Current Opinion in Biotechnology entitled "Unlocking the next generation of phage therapy: the key is in the receptors". They argue that identifying the receptors a phage recognizes should be part of the standard pipeline before its use in phage therapy. For a fantastic walkthrough, check out this Twitter thread by @NandoGordillo.

  623. Sofia Dahlman (Monash University) and colleagues published a new review in Current Opinion in Biotechnology on phages to shape the gut microbiota. They discuss current understanding of phages within the gut (from infancy, to adulthood, to disease progression) and highlight recent advances in phage-based interventions, such as phage therapy and whole virome transplant.

  624. The third iVoM event will be Thursday, November 19, 4pm GMT, and the theme will be "Virus-host interaction: overcoming cell barriers".

    It will feature talks by: Martin J. Loessner (ETH Zurich, Zurich, Switzerland) Carlos São-José (Universidade de Lisboa, Portugal) Sigal Ben-Yehuda (Hebrew University-Hadassah Medical School)

    Chairs: Madalena Pimentel (Universidade de Lisboa, Portugal) Ry Young (Texas A&M University, College Station, TX, USA)

    Register for the whole series or for individual events at https://ivom.phage.directory.

    Watch past talks on YouTube!

  625. The third iVoM event will be Thursday, November 19, 4pm GMT, and the theme will be "Virus-host interaction: overcoming cell barriers".

    It will feature talks by: Martin J. Loessner (ETH Zurich, Zurich, Switzerland) Carlos São-José (Universidade de Lisboa, Portugal) Sigal Ben-Yehuda (Hebrew University-Hadassah Medical School)

    Chairs: Madalena Pimentel (Universidade de Lisboa, Portugal) Ry Young (Texas A&M University, College Station, TX, USA)

    Register for the whole series or for individual events at https://ivom.phage.directory.

    Watch past talks on YouTube!

  626. Looking for viruses in your microbiome data? KBase has new Apps to identify and analyze viral sequences in your assemblies. Join this webinar on Nov. 4 at 1pm ET/10am PT to learn the basics of viral analysis in KBase from Dr. Ben Bolduc of The Ohio State University. Ben and others in Dr. Matthew Sullivan's lab at OSU have been working with the KBase team to integrate several viral tools to create their first viral genomics pipeline.

  627. Patients in India in need of phage therapy used to have to ship their samples internationally for phage susceptibility testing, which was a dealbreaker for even phage-friendly doctors as this was slow and expensive. Now, they can do it locally because of a new partnership between Vitalis Phage Therapy, the Eliava Institute in Georgia, and a major Indian diagnostics company. For about $11 USD, patients in any city in India will be able to find out within a few days whether their samples are susceptible to the Eliava Institute's phage cocktails.

  628. There is currently no working treatment for recurring bacterial vaginosis (BV). Christine Landlinger (PhagoMed Biopharma GmbH) and colleagues published a new preprint in medRxiv showing that their engineered phage endolysin candidate eliminates Gardnerella in bacterial vaginosis without damaging the healthy vaginal microbiome. This is great news and paves the way for development of this lysin (which came from a prophage) as a vaginal suppository for BV.

  629. Long-read genome sequencing suffers from high DNA requirements and sequencing errors, so Olivier Zablocki (Ohio State University) and colleagues developed VirION2, an integrated short- and long-read metagenomic wet-lab and informatics pipeline. Check out their new preprint here, where they show how VirION2 sample prep and workflow can help researchers better investigate the virosphere, even when analyzing low-biomass samples. Find VirION2 on Protocols.io

  630. PHAVES #10 will be a seminar by Dr. Paul Jaschke, Assistant Professor at Macquarie University, Australia, on Nov. 10, 5:30 PM Eastern Time (GMT-4) / Nov. 11 at 9:30 AM AEST. His talk is entitled "Learning How to Engineer Genomes by Building Phage", which will cover research stories about highly engineered øX174 phage created in his group and lessons learned about genome engineering in general and phage engineering in particular. Small group networking to follow!

    Register here.

  631. PHAVES #10 will be a seminar by Dr. Paul Jaschke, Assistant Professor at Macquarie University, Australia, on Nov. 10, 5:30 PM Eastern Time (GMT-4) / Nov. 11 at 9:30 AM AEST. His talk is entitled "Learning How to Engineer Genomes by Building Phage", which will cover research stories about highly engineered øX174 phage created in his group and lessons learned about genome engineering in general and phage engineering in particular. Small group networking to follow!

    Register here.

  632. PHAVES #10 will be a seminar by Dr. Paul Jaschke, Assistant Professor at Macquarie University, Australia, on Nov. 10, 5:30 PM Eastern Time (GMT-4) / Nov. 11 at 9:30 AM AEST. His talk is entitled "Learning How to Engineer Genomes by Building Phage", which will cover research stories about highly engineered øX174 phage created in his group and lessons learned about genome engineering in general and phage engineering in particular. Small group networking to follow!

    Register here.

  633. Adaptive Phage Therapeutics (APT) has received Orphan drug designation from the FDA for the use of its PhageBank™ (a continually expanding library of phages) to treat prosthetic joint infections. APT will now be eligible for seven years of U.S. market exclusivity upon FDA approval, will pay less in marketing application fees, will be exempt from performing clinical studies in pediatric patients, and will receive tax credits that reduce clinical development costs.

  634. Vivek Mutalik (Lawrence Berkeley National Lab) and colleagues published their method of high-throughput mapping of the phage resistance landscape in E. coli in PLoS Biology. Sound familiar? We highlighted this paper's corresponding preprint and backstory in August 2020 in Issue 88 of Capsid & Tail, in which Rohit Kongari interviewed Vivek. Sadly, this was also Dr. Richard Calendar's final paper (see Community section for additional remarks).

  635. As there is currently no gold standard for developing a phage cocktail, Melissa Haines (University of Leicester, UK) and colleagues set out to describe a novel approach to phage cocktail development by comparing different methods side by side. They found that for phages targeting ESBL-producing E. coli and Klebsiella UTI isolates, planktonic killing assays were as effective as efficiency of plating assays, while being much less time consuming.

  636. Before now, only eight phages and two archaeal viruses had been isolated from deep sea vents. Sarah Thiroux (Université de Bretagne Occidentale, France) and colleagues published a new paper describing another: the first head‐tailed virus infecting hyperthermophilic methanogenic deep‐sea archaea. The virus infects Methanocaldococcus species, and infection leads to continuous release of virions, rather than a drop in host growth.

  637. The phage research community sadly lost one of its greats this month; Dr. Richard Calendar passed away on October 10 following a long battle with prostate cancer.

    Rich, as he was known to many, was a renowned UC Berkeley Professor of Molecular Biology (and later of Biochemistry, Biophysics and Structural Biology) from 1968-2020. Based on the many accounts from his colleagues, he was a wonderfully optimistic colleague and friend, whose sense of humor will be deeply missed. He was an international leader in the study of phages targeting E. coli, Listeria monocytogenes, and Bacillus anthracis. He was devoted to teaching, and one of his trainees even won the Nobel prize. Rich is known to many as having written the book on phage (literally!), and he worked at the bench until a month before he died. He will clearly be deeply missed, both by those who knew him and those who missed the chance to meet him.

    Read UC Berkeley's article in memory of Rich here, and read this Life in Science paper written by Rich in 2013, where he candidly sums up how he got into phage science and what he found there. Rest peacefully, Rich, and let us all continue your legacy of collaboration, mentorship, good humor, and curiosity.

  638. The Ibadan Bacteriophage Research Team (IBRT) is hosting a series of webinars Oct 26-27 to celebrate World Phage Week! Theme: "Early Career Research in Bacteriophage Studies: A leverage for Bacteriophage Therapy Advancement". Speakers: Prof. Urmi Bajpai, Dr. Nnadi Nnaemeka, Stephanie Lynch and Dr. Sabrina Green. Registration is now full, so if you secured a spot, lucky you! Otherwise stay tuned for info about possible recordings (follow the IBRT on Twitter for up-to-date info).

  639. Dr. Jason Gill (Center for Phage Technology, Texas A&M) and Dr. Paul Turner (Yale University) will discuss their work on phage therapy to treat drug resistant bacterial infections in a free webinar hosted by The Scientist on Oct 29 from 2:30-4:00 PM Eastern time. Register here.

  640. The Ibadan Bacteriophage Research Team is hosting a series of webinars to celebrate International Phage Week at the end of the month! Talks will take place Oct 26 and 27. The theme will be "Early Career Research in Bacteriophage Studies: A leverage for Bacteriophage Therapy Advancement". Speakers will be Prof. Urmi Bajpai, Dr. Nnadi Nnaemeka, Stephanie Lynch and Dr. Sabrina Green. Save the dates and register here.

  641. I am looking for a collaborative research grant under INDIA-EU Cooperation on research & innovation Green Deal: Building a low-carbon, climate resilient future sponsored by Department of Biotechnology, New Delhi. I would like to develop phage cocktail as a Biocontrol agent in Food Industry and Veterinary purpose. Please contact me at somesh.baranwal@cup.edu.in

  642. Emma Guerin and Colin Hill (APC Microbiome Ireland and University College Cork) published a new review on human gut phages in Frontiers in Cellular and Infection Microbiology. They discuss the main human gut phageome findings to date (incl. composition, phage-host interactions, and persistence of virulent phages) as well as current methods, bottlenecks, and ways to overcome hurdles in this field.

  643. The next rendition of PHAVES will be a seminar with Rodrigo Ibarra Chavez on Oct 20 at 11AM Eastern / 5PM CEST. He'll tell us about phage-inducible chromosomal islands (PICIs), piracy in the phage-world, and insights on their application in biotechnology. Small group networking to follow! Register here!

  644. The next rendition of PHAVES will be a seminar with Rodrigo Ibarra Chavez on Oct 20 at 11AM Eastern / 5PM CEST. He'll tell us about phage-inducible chromosomal islands (PICIs), piracy in the phage-world, and insights on their application in biotechnology. Small group networking to follow! Register here!

  645. It was a great week for microbiology; Nobel prizes were awarded for discovering CRISPR-Cas (Emmanuelle Charpentier and Jennifer Doudna) and Hepatitis C (Harvey Alter, Michael Houghton, Charles Rice). The phage field should be especially proud of the countless phage researchers who have contributed to the understanding of CRISPR (and the phages that made it possible!). Here's to all who have contributed to these remarkable bodies of understanding, which we all get to continue exploring!

  646. Ruby Prosser Scully wrote a nice phage therapy article for the Australian healthcare professional-targeted paper Medical Republic. She interviews Australian phage researchers Peter Speck, Jon Iredell and Jeremy Barr, among others who are working toward bringing phage therapy closer to the mainstream.

  647. Thanks so much to the nearly 300 people who attended the first iVoM webinar! The second iVoM event will be Thursday, October 15, 4PM GMT, and the theme will be "Virus structures and function".

    It will feature talks by: Petr Leiman, University of Texas Kristin Parent, Michigan State University Pascale Boulanger, Université Paris-Saclay

    Chairs: Deborah Hinton, NIH Paulo Tavares, Université Paris-Saclay

    Register for the whole series or for individual events at https://ivom.phage.directory!

  648. Thanks so much to the nearly 300 people who attended the first iVoM webinar! The second iVoM event will be Thursday, October 15, 4PM GMT, and the theme will be "Virus structures and function".

    It will feature talks by: Petr Leiman, University of Texas Kristin Parent, Michigan State University Pascale Boulanger, Université Paris-Saclay

    Chairs: Deborah Hinton, NIH Paulo Tavares, Université Paris-Saclay

    Register for the whole series or for individual events at https://ivom.phage.directory!

  649. The Indian ‘Society for Bacteriophage Research and Therapy’ (SBRT) is a platform for phage researchers to share their expertise & resources. SBRT is pleased to announce a webinar on “Knowing the unknown: Approaches to characterize the vast uncharacterized proteome of bacteriophages” by Dr. Julianne H. Grose, Associate Professor, Microbiology and Molecular Biology, Brigham Young University, Provo, Utah, USA. The talk would be preceded by a keynote address by Prof. B.N. Tripathi, Deputy Director General, Animal Sciences, Indian Council of Agriculture Research Head Quarters, New Delhi. Please join us on 01 October (Thursday), 2020 at 7 pm IST/7.30 am MDT. We look forward to your participation. Register here.

  650. Hello fellow phage workers - are you modifying phages, genetically or chemically, to improve their ability to act as therapeutics? Attaching toxins so the phage capsid provides specificity to target bacteria? Creating phage based vaccines? If you are making modified phages for treatments, please consider contributing to a special issue of Pharmaceuticals titled "Bacteriophages as Therapeutic Delivery Vehicles" edited by Paul Hyman (phyman@ashland.edu), Tina Schneider (clschnei@carrollu.edu), and Bryan Gibb (bgibb@nyit.edu). Contact us for more information or check the special issue home page.

  651. The longest river of India, the Ganges, is reported for the richest diversity of bacteriophages compared to any other river across the globe. This diversity was formed when bacteriophages were trapped at the origin of the river millions of years ago because of the collision of the Indian and Eurasian tectonic plates. This resulted in the buildup of the Himalayas (Mountains) and as a seed source of bacteriophages which is continuously releasing them in the river water. I have isolated more than 30 different phage cocktails and various different bacterial hosts that are under investigation. The river Ganges is also known as a holy river of India since the times of British India due to its high antibacterial property. In the coming future, river Ganges may serve the purpose of the biggest and could be a source of novel bacteriophages. I am tweeting at @Atif_micro.

  652. Lorenz Leitner (Balgrist University Hospital, Switzerland) and colleagues published a new paper in The Lancet Infectious Diseases on the results of a randomised, placebo-controlled, double-blind clinical trial to investigate intravesical phage therapy using the Eliava Institute's Pyophage cocktail for UTIs in transurethral prostate resection patients. They showed non-inferiority and a favourable safety profile for the phage treatment compared to antibiotics, though phage was not superior to placebo bladder irrigation.

  653. Tao Zuo (The Chinese University of Hong Kong) and collegues published a new paper in Cell Host & Microbe on the fecal DNA virome of 930 healthy adults from two regions in China spanning six ethnicities, including urban and rural residents. They found that geography had the strongest impact on gut virome variation, that ethnicity-distinct diets associated with viral species composition, that urbanization enhanced virome differences between individuals, and that the virome was more heterogeneous than the bacterial microbiome.

  654. Elections for the International Society for Viruses of Microorganisms (ISVM) Officers will take place in October 2020. We are still looking for more candidates who wish to serve on the ISVM Board and are extending the candidate application deadline until September 15, 2020.

    As an Officer you can help shape the future of ISVM. All elected positions are open, but we are particularly interested in candidates for President-elect. Candidates are also sought for Vice-President, Secretary, Secretary Assistant, Treasurer. The election is open to all ISVM members.

    All candidates should send your name, email address, and a brief bio describing your interest and qualifications (no more than one paragraph please) to membership@isvm.org.

  655. Andrzej Górski (Polish Academy of Sciences) and colleagues published a new perspective in Future Medicine discussing phages in the fight against COVID-19. They describe research done in the last 15 years pointing to phage interference with eukaryotic viruses, and suggest that repurposing phage therapy as an adjunct therapy for viral infections may be warranted.

  656. The first iVoM event will be Sept. 17 at 11:00 AM GMT, under the theme "Ecology and evolution of microbial viruses". It will feature talks by:

    • Rob Edwards (Flinders University, Australia)
    • Ruth-Anne Sandaa (University of Bergen, Norway)
    • Colin Hill (University College Cork, Ireland)

    Chairs:

    • Corina Brussaard (Royal Netherlands Institute for Sea Research, Netherlands)
    • Debbie Lindell (Faculty of Biology at the Technion - Israel Institute of Technology, Israel)

    Register for the whole series or for individual events at https://ivom.phage.directory.

  657. Phages for Global Health is doing fantastic things in the phage field — they've trained phage researchers in developing countries who've collectively gone on to win hundreds of thousands in grant money within just a couple of years! If you have a moment, please vote for Phages for Global Health for the MIT Solve social impact award (category: Health Security and Pandemics).

  658. Phage Oxford will take place September 9-10. Register here!

    The meeting will feature over 20 oral presentations by an international faculty of senior & junior researchers from across the world, covering phage molecular and structural biology; modelling; food and biotechnology applications; phage-host interactions; and therapeutic and antimicrobial applications. Furthermore, a life-time achievement award will be presented to Professor Elizabeth Kutter (citation by Martha Clokie), who will also give a keynote address.

  659. Tiffany Luong (San Diego State University) and colleagues published a new phage therapy review in Clinical Therapeutics. They summarize the increasing body of clinical data on phage therapy (including a nice visual showing the pathogens phages have been used to treat between 2005-2020, the corresponding sites of infection, and the routes of administration). They highlight key gaps in current knowledge, and discuss the use of phage adjuvants as a promising new avenue for improving phage killing of bacteria.

  660. We're excited to announce that we've been awarded a grant from the Mozilla Foundation in partnership with Phages for Global Health (PGH), a nonprofit organization that facilitates the application of antibacterial phage technology in the developing world.

    This grant will support the digitization of PGH's hands-on phage workshop teaching materials. During this time when PGH is unable to deliver in-person workshops due to the coronavirus pandemic, this online resource should be especially valuable, and we are grateful to the Mozilla Foundation for their timely support!

    Phage Directory has started building a website for the course, and PGH's workshop instructors will soon be depositing lecture videos, laboratory demonstration videos, experimental protocols, scientific papers on phage topics, and frequently asked questions. All of this material will be freely available to anyone in the world, and we are designing the website so that it will be more easily accessible to people in resource-limited countries where internet bandwidth is often reduced.

    We plan to launch this online resource in December — stay tuned! (Read more in PGH's newsletter here!)

  661. The Indian ‘Society for Bacteriophage Research and Therapy’ (SBRT) is a platform for phage researchers to share their expertise & resources. SBRT is pleased to announce a webinar on “Phage Directory: Making the world's phages accessible, manageable and shareable” by Dr. Jessica Sacher and Jan Zheng, founders of Phage Directory. The directory was created in 2017 with an aim to develop the technological infrastructure to support an ever-expanding global collection of well-characterized phages curated by phage researchers. The mission of this independent, dynamic two-person organization is to assist in phage therapy and biocontrol by empowering the global phage community to access, use and build upon the world’s phage knowledge.

    Please join us on 03 September (Thursday), 2020 at 8.30 pm IST/11 am EDT. We look forward to your participation. Register here!

  662. The organizers of VoM 2020, in collaboration with ISVM and Phage Directory, are excited to announce iVoM, a series of online lectures from prominent researchers studying viruses of microbes. These events will run monthly from September to February, in the lead-up to the in-person version of VoM, which will still take place July 2021.

    The first iVoM event will be Sept. 17 at 11:00 AM GMT, under the theme "Ecology and Evolution of microbial viruses". It will feature talks by:

    • Rob Edwards (Flinders University, Australia)
    • Ruth-Anne Sandaa (University of Bergen, Norway)
    • Colin Hill (University College Cork, Ireland)

    Chairs:

    • Corina Brussaard (Royal Netherlands Institute for Sea Research, Netherlands)
    • Debbie Lindell (Faculty of Biology at the Technion - Israel Institute of Technology, Israel)

    Register for the whole series or for individual events at https://ivom.phage.directory.

  663. I am an enthusiastic beginner of phage research and a PhD holder in virus immunodiagnostics. Since phage research is quite new in my country, Kenya, I am looking for mentorship from a senior phage researcher and placement in an active phage lab where I can learn phage techniques. Thanks! Email: jkimani@jkuat.ac.ke

  664. The Cystic Fibrosis Foundation has awarded $15 Million to 33 organizations studying how to improve outcomes for cystic fibrosis patients battling infections, and three are phage therapy-based approaches! One is for research into phages that target Pseudomonas, another is engineering phages to target Burkholderia, and the third is developing a phage library to target each of the different strains of Burkholderia bacteria known.

  665. Phage Directory is exploring a new opportunity related to phage sharing, and we're looking to hear from the phage community! Phage biotech companies are seeking to expand their phage collections (for therapeutics and biocontrol), and we're helping them identify research labs interested in sharing/licensing their phages. Do you collect phages? If so, I'd love to talk to you about this new opportunity. Email jessica@phage.directory.

  666. Save the date for PHAVES, which continues Sep 1 at 6 PM EST (GMT-4), 8 AM Sept 2 AEST. (Welcome Australia and NZ! We moved the time for this one, so you won't be asleep!) Dr. Sabrina Green of Baylor College of Medicine and BCM TAILOR Labs will tell us about her gut phage research (she defended her PhD just yesterday!! Congrats Sabrina!!) and about her work co-founding TAILOR labs, which produces therapeutic phages for patients. Small-group networking session to follow!

  667. The 2nd Hanson Wade Bacteriophage Therapy Summit takes place (virtually) Aug 27-28, and registration is open! On the Thursday afternoon of the conference, we'll present our vision of how to use technology to scale up phage therapy.

  668. Aurélie Fluckiger (Gustave Roussy Cancer Campus, France) and colleagues published a new paper in Science showing cross-reactivity between tumor antigens and the tape measure protein encoded by an Enterococcus hirae prophage. Administering enterococci expressing the phage gene improved anti-tumor immunotherapy in mice, and in human cancer patients, phage presence was associated with improved survival after immunotherapy.

  669. Introducing the Viruses of Microbes 2020 Webinar Series: Take a walk on the VoM side

    VoM 2020 Organizers, ISVM, Phage Directory

    Many of us were excited about Viruses of Microbes (VoM) 2020, the conference that had been set to take place this summer in Portugal. In collaboration with the International Society for Viruses of Microorganisms (ISVM) and Phage Directory, the organizers of VoM 2020 are excited to announce iVoM, a series of online lectures from prominent researchers studying viruses of microbes. These events will run monthly from September to February, in the lead-up to the in-person version of VoM, which will still take place July 2021.

    The first iVoM event will be Sept. 17 at 11:00 AM GMT, under the theme "Ecology and Evolution of microbial viruses". It will feature talks by:

    • Rob Edwards (Flinders University, Australia)
    • Ruth-Anne Sandaa (University of Bergen, Norway)
    • Colin Hill (University College Cork, Ireland)

    Chairs:

    • Corina Brussaard (Royal Netherlands Institute for Sea Research, Netherlands)
    • Debbie Lindell (Faculty of Biology at the Technion - Israel Institute of Technology, Israel)

    Register for the whole series or for individual events at https://ivom.phage.directory.

  670. Bacteriophage Therapy Summit

    Hanson Wade

    The 2nd Hanson Wade Bacteriophage Therapy Summit takes place (virtually) Aug 27-28, and registration is open!

    We (Jessica and Jan, Phage Directory) are excited to be participating in a panel discussion/workshop alongside Dr. Austen Terwilliger of BCM TAILOR Labs, hosted by Dr. Liesl Jeffers-Francis of North Carolina A&T State University, about the development of a universal phage database and (distributed) phage library.

  671. Phage Oxford: Virtual Conference

    Phage Oxford will take place September 9-10. Register here!

    The meeting will feature over 20 oral presentations by an international faculty of senior & junior researchers from across the world, covering phage molecular and structural biology; modelling; food and biotechnology applications; phage-host interactions; and therapeutic and antimicrobial applications. Furthermore, a life-time achievement award will be presented to Professor Elizabeth Kutter (citation by Martha Clokie), who will also give a keynote address.

  672. Carmen Gu Liu (TAILΦR, Baylor College of Medicine) and colleagues published a new paper in MBio describing phage-antibiotic synography, a comprehensive method of assessing the effects of phage-antibiotic combinations. They saw that phages can help antibiotics beat already-antibiotic resistant ExPEC strains, that synergy depended on antibiotic class, and that simulating human host-like conditions (eg. serum and urine) dramatically affected phage-antibiotic interactions.

  673. Phage genomes are usually identified based on sequence similarity to genomes already in databases. Kimmo Sirén (The GLOBE Institute, University of Copenhagen) and colleagues published a new preprint showing rapid discovery of novel prophages using biological feature engineering and machine learning. Using their feature-based approach, they reanalyzed publicly available datasets and discovered consistently more phages (and faster) compared with state-of-the-art tools.

  674. The Mayo Clinic has been in the news lately as a major US medical institution making serious investments into phage therapy. Watch this 5-min video about how the Mayo Clinic treated its first patient, John Haverty, with phages.

  675. Bacteriophage Forum: A series of ecology/evolution phage talks

    Kavli Institute, UC Santa Barbara

    The Kavli Institute for Theoretical Physics at UC Santa Barbara is hosting a series of phage talks (particularly from the eco-evolutionary perspective) called Bacteriophage Forum.

    The dates are: August 11,18, 25 and September 1, 8, 2020 at 12:00-1:15, 1:30-2:45 pm PDT.

    Tentative line-up of the talks: Aug 11: Matthew Sullivan (OSU) and Forest Rohwer (SDSU) Aug 18: Graham Hatfull (Pittsburgh/HHMI) and Joshua Weitz (Georgia Tech) Aug 25: Luciano Marrafini (Rockefeller/HHMI) and Paul Turner (Yale) Sept 1: Alison Buchan (UTK) and Britt Koskella (UCB)

    Register here.

  676. SBRT Webinar: Phages for Global Health

    Society for Bacteriophage Research and Therapy (SBRT)

    The Indian Society for Bacteriophage Research and Therapy (SBRT) is a platform where researchers working on phages and their applications share expertise & resources.

    SBRT is pleased to announce a webinar on “Using phages to combat AMR: Scientific capacity building through laboratory training workshops” by Dr. Tobi Nagel, Founder & President, Phages for Global Health; Prof. Martha Clokie, Professor, University of Leicester, UK & Editor-in-Chief of PHAGE: Therapy, Applications, and Research, and Dr. Janet Nale, Research Associate, University of Leicester. The mission of Phages for Global Health, a US non-profit, is to facilitate the application of phage technology and empower scientists to develop phage products that will be both technically effective and socially accepted within the local cultural contexts of the trainees.

    Please join us on 14 August (Friday) at 8.30 pm IST/8 am PDT/4 pm BST. Register here.

  677. PHAVES 5: AMA with Dr. Evelien Adriaenssens on Aug 18

    Phage Directory

    Thanks to all who attended PHAVES 4 this week! We had a great turnout!

    Next up will be an Ask Me Anything (AMA) with Dr. Evelien Adriaenssens on August 18 at 11:00 AM Eastern (GMT-4) / 4:00 PM UK (GMT+1). Evelien will answer your questions about phage taxonomy, viromics, and her transcontinental career progression from PhD student to postdoc to new PI, so bring your questions! Register here!

  678. Holger Loessner (Paul-Ehrlich-Institut, Germany) and colleagues published a new paper in Antibiotics on the use of kinetic fingerprinting to explore the dynamics of specific phage-host pairs, with the goal of designing effective phage therapies. For a Klebsiella pneumoniae phage-host pair, they saw that a reduction in bacterial concentration required a high multiplicity of infection, complete bacterial clearance was hard to accomplish, and binding affinity was one of the most crucial factors for bacterial reduction.

  679. Vito Adrian Cantu (San Diego State University) and colleagues published a new preprint on Phage Artificial Neural Networks (PhANNs), a fast and accurate machine learning tool and web server that can classify phage proteins into ten major classes of structural proteins. This tool should help understand the functions and environmental contributions of phage-encoded structural proteins, many of which are still function-unknown.

  680. Huge thanks to our new (and not-so-new) volunteers!

    Phage Directory

    We'd like to give a shout-out to our new volunteers, M. R. Madhav (phage protocols curator for our future phage protocol compendium), Curtis Hoffmann (Twitter and LinkedIn), and Lizzie Richardson (Capsid & Tail feature editing). We're so excited to have you on board!

    Thanks also to our not-so-new volunteers, Rohit Kongari (Capsid & Tail link collecting) and Stephanie Lynch (PHAVES organizing)! Thanks to you, we've been able to keep expanding into new areas while keeping our ongoing community projects rolling!

  681. Legesse Garedew Kifelew (Flinders University, Australia) and colleagues published a new paper in BMC Microbiology showing efficacy of a cGMP-produced phage cocktail in treating diabetic mouse wound infections caused by MRSA. They applied the cocktail topically, and saw a significant decrease in bacterial load and wound size in phage- and vancomycin-treated groups compared with infected saline-treated mice. Paper | News release.

  682. Some bacteria release colicins to kill competitors by carefully timing lysis for part of their population at a time. But group B colicins don't come with lysis genes, so how do cells safely release them? Stefanie Spriewald (LMU Munich, Germany) and colleagues published a new paper in MBio showing that colicin release in Salmonella has cleverly evolved to make use of prophage-mediated lysis, which already optimizes for not killing the whole population at once, leading to a stable system of phage-colicin interplay.

  683. We don't know much about phages in groundwater reservoirs, even though bacteria in these environments are thought to influence biogeochemical cycles. Ole Hylling (Aarhus University, Denmark) and colleagues published a new paper in Scientific Reports showing isolation of two new phages, each representing a novel genus, from a groundwater reservoir, highlighting how unexplored these environments are from a phage perspective.

  684. Phage.ai Update

    Phage.ai, the interactive platform created by Piotr Tynecki (SLAVIC AI) and Proteon Pharmaceuticals, has released a new update! You can use phage.ai to access 10K phage sequences with extended characteristics (lifecycle, taxonomy, hosts, topology, strandedness, etc), make predictions about your own phages (eg. predict lifestyle), and more!

  685. The phage field has seen mixed results using phages to treat oral pathogens. Sabrina Green (Baylor College of Medicine) and colleagues have uncovered new reasons behind why some phages may be particularly well-suited for gut pathogen targeting. They published a new preprint characterizing a phage that specifically binds gut mucin to help itself better target its hosts. Sabrina also wrote a great Twitter thread taking us through her findings!

  686. Patrick Pausch (UC Berkeley) and colleagues have published a new paper in Science on a new 'minimal functional' CRISPR-Cas system comprised of a single 70-kDa protein, CasΦ, that they discovered in phages. This system is active in human and plant cells, has expanded target recognition capacity, and is half the molecular weight of Cas9 and Cas12a, making it extra advantageous for genome editing.

  687. Kaitlyn Kortright (Yale School of Medicine) and colleagues published a new paper in PNAS showing their use of INSeq screening to rapidly identify candidate phage receptors. They successfully identified receptors for 4 well-characterized phages and for 5/6 newly-isolated phages. Their approach is based on screening transposon mutant libraries under phage pressure to find bacterial genes required for phage infection.

  688. Join us this coming Tuesday, July 21 for PHAVES 3!

    Phage Directory

    Our next PHAVES event will be Tuesday, July 21 at 11 AM Eastern, 5 PM CEST (GMT+2).

    Piotr Tynecki of SLAVIC AI, the creator of phage.ai, will give a talk entitled "Boosting phage exploration by Artificial Intelligence: what could data science do for your research?"

    Sign up here at seminars.phage.directory. If you've already signed up for the whole series, no action necessary! You'll get an email closer to the date.

    Wondering about the recap/recording of PHAVES 2? We will recap PHAVES 2 and 3 in next week's Capsid & Tail.

  689. Join us July 21 for PHAVES 3!

    Phage Directory

    Thanks so much to everyone who joined us for PHAVES earlier this week, where Elyse Stachler talked about her research into combining phages with disinfectants. We had a great time meeting so many of you at the breakout sessions that followed! Her session will be recapped later this month here in Capsid & Tail!

    Our next event will be Tuesday, July 21 at the same time, 11 AM Eastern, 5 PM CEST (GMT+2). Piotr Tynecki of SLAVIC AI, the creator of phage.ai, will give a talk entitled "Boosting phage exploration by Artificial Intelligence: what could data science do for your research?" Sign up here at seminars.phage.directory. If you've already signed up for the whole series, no action necessary! You'll get an email closer to the date.

  690. Dr. Saima Aslam of IPATH in San Diego received funding from the Cystic Fibrosis Foundation to initiate and maintain a multicenter clinical cohort of cystic fibrosis patients and lung transplant recipients infected with Burkholderia cepacia complex (BCC) pathogens. Her goal is to develop a BCC-specific phage library, to better understand progression of BCC infection in CF patients, and to treat CF patients in a future clinical trial with these phages. Learn more about IPATH in the July 2020 edition of their quarterly newsletter.

  691. Yoon Hwang of the Naval Medical Research Unit in San Antonio received the Dr. Delores M. Etter Top Scientists and Engineers of the Year Award for his research into the development of a handheld device that uses phages to detect and identify venom in the human body following a bite from a poisonous snake or animal. Dr. Hwang is also developing phage therapy to treat snakebites, by having phages target and neutralize venom components.

  692. IBRC Webinar July 9: Prof. Yves Briers

    International Bacteriophage Research Consortium

    International Bacteriophage Research Consortium (IBRC), created by Open Health Systems Laboratory (OHSL), USA and Acharya Narendra Dev College (ANDC), University of Delhi, India is organizing an online lecture by Prof. Yves Briers from Ghent University, Belgium on “From discovery to high-throughput engineering of phage lysins targeting Gram-negative bacteria”. Recently, Yves Briers and team have developed a brilliantly conceptualized high-throughput discovery platform ‘VersaTile’ an iterative approach to design, build, and screen engineered lysins. Yves Briers will be joining us from Ghent, Belgium on 9 July (Wednesday) at 5.00 pm Indian Standard Time (IST)/ 1.30 pm Central European Summer Time (CEST). We look forward to your participation. For registration, please click: https://bit.ly/3dWKrD4

  693. PHAVES is back on Tuesday with Dr. Elyse Stachler!

    Phage Directory

    Our virtual event series, PHAVES, continues this coming Tuesday, July 7 at 11:00 AM Eastern (GMT-4) / 5:00 PM Zurich (GMT+2). Dr. Elyse Stachler, postdoc at Eawag in Switzerland, will share her research into combining phages with disinfectants. After that, we'll host a set of small-group breakout rooms so everyone can meet a few new faces in the phage field. Register here: https://seminars.phage.directory/

  694. Seeking research & networking opportunities

    Abiola Olaitan

    I am excited about moving to Canada and seeking research opportunities (academia or industry) in phage therapy in Canada. I am an early-career researcher with robust experience in bacterial antibiotic resistance and host-pathogen interactions. I plan to transition into phage therapy research at the interphase of microbial antibiotic resistance and virulence. I am currently seeking networking and research opportunities in academic or industrial institutions in Canada. Email: olaitanmuyi@gmail.com

  695. Seeking T2 & T6 phages

    Jeremy Barr, Monash University

    The Barr lab is looking for laboratory-adapted strains of T2 and T6 phage from different labs to examine variation between them and older stocks. If you have either of these phages and would be willing to send us an aliquot of blot that would be greatly appreciated. We would acknowledge receipt and use of phages in any upcoming manuscripts. Email: jeremy.barr@monash.edu

  696. Ayesha Hassim (University of Pretoria, South Africa) and colleagues published a new paper in Microorganisms showing that an "aggressively lytic" phage hampered isolation of Bacillus anthracis from samples collected from the carcass of a wildebeest suspected to have died of anthrax. This work shows the role phages can play in decreasing apparent bacterial concentrations in samples, and shows the impact phages may have on B. anthracis in the wild.

  697. Special Issue of Pharmaceuticals journal

    Paul Hyman, Ashland University

    Are you modifying phages, genetically or chemically, to improve their ability to act as therapeutics? Attaching toxins so the phage capsid provides specificity to target bacteria? Creating phage based vaccines? If you are making modified phages for treatments, please consider contributing to a special issue of Pharmaceuticals titled "Bacteriophages as Therapeutic Delivery Vehicles" edited by Paul Hyman (phyman@ashland.edu), Tina Schneider (clschnei@carrollu.edu), and Bryan Gibb (bgibb@nyit.edu). Contact us for more information.

  698. How should we optimally design phage cocktail timing and dosage to deal with evolutionary escape of pathogens? Guanlin Li and Chung Yin Leung (Georgia Institute of Technology) and colleagues published a new paper on using mathematical modeling to optimize phage cocktail design. They show that optimized single-strain phage therapy may cure infections in immunocompetent patients, but may fail in immunodeficient hosts, though including a counter-resistant phage could restore therapeutic efficacy. Paper | Earlier preprint.

  699. Thilini Jayasinghe (University of Auckland, New Zealand) and colleagues published a new paper in Frontiers in Cellular and Infection Microbiology showing differences in compositions of gut bacterial populations and phages in 5–11 year-olds born preterm compared to full term. Paper | Tweet thread.

  700. Intralytix is a phage company in Maryland, USA that began in 1998 developing phage products for food; recently they've moved toward human therapy. Read about their recent progress here, including their new NIAID-funded Shigella phage clinical trial, and the fact that they've seen a 1600% increase over the last 5 years in their phage (for food) product sales (4 FDA-approved phage products on the market), signaling growing acceptance of phage use in industry.

  701. Methods for extraction and detection of Pf bacteriophage DNA from the sputum of patients with cystic fibrosis

    A 2020 paper in PHAGE evaluates methods for processing sputum from patients with cystic fibrosis to detect Pf bacteriophage virion-derived nucleic acid, testing the effect of bead beating, DNase digestion and heating steps and quantifying Pseudomonas aeruginosa and Pf phage. It describes an optimized protocol for isolating DNA for PCR or sequencing-based studies.

  702. New! Phage Directory Sustaining Sponsor Program

    Phage Directory

    We're excited to announce that we've launched an ongoing sponsorship program for Phage Directory's community building activities, and we have our first Bronze Sponsor: JAFRAL!

    JAFRAL is the world's only CMO/CRO dedicated primarily to phage manufacturing, and we are thrilled to have their ongoing support.

    This support helps us continue to build up the phage community and especially to plan for the long term, and we are very grateful! Email sponsor@phage.directory to learn more about how you can support us.

  703. PHAVES Kick-off Party!

    Phage Directory

    Phage Directory's Virtual Event Series, PHAVES, starts this Tuesday, June 16 at 9:00 AM MDT (GMT-6)! For the kickoff event, Jessica and Jan will introduce the virtual series and Phage Directory's projects for 2020, and we'll then grab coffee and/or beer, catch up with everyone, and meet some new faces! No registration required: Zoom link will be posted here closer to the date: https://seminars.phage.directory/

  704. Seeking scholarship support

    Atiwich Patthamapornsirikul

    My name is Atiwich and I am graduated from Horticultural Science at University of Bologna. I am a prospect Ph.D. student at Plant Pathology, INRAe PACA, Avignon, France, in the research project entitled “Building biocontrol of plant disease caused by Pseudomonas syringae from the knowledge of biodiversity of phages naturally present in agriculture”. I am nominated as a waiting list for Franco-Thai scholarship but the grant can be at 1060 euro per month while there is some amount to be fulfilled. I am writing this letter to ask for a partial scholarship. Thank you. If you can help, please email me at atiwith.pattha@gmail.com.

  705. Lecture by Prof. Graham Hatfull: Mycobacteriophages: Diversity, dynamics and therapy

    [International Bacteriophage Research Consortium](http://bacteriophage.ohsl.us/)

    We are very pleased to have Prof. Graham Hatfull share his inspiring body of work on mycobacteriophages through live in discussion with us. Graham Hatfull’s research focuses on the molecular genetics of the mycobacteria and their bacteriophages. His work with students has served as an impressive model for the HHMI Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) program in the United States that introduces undergraduate students to authentic scientific research in a two-term course and has facilitated collection of over 15,000 phage isolates. This collection of phages led to the creation of a phage cocktail that was recently used to fight an antibiotic resistant infection in a 15-year old lung transplant patient.

    Prof. Hatfull will be joining us from Pittsburgh, USA on Wednesday, 17 June at 6.30 pm Indian Standard Time (IST)/ 9 am Eastern Daylight Time (EDT). Register here.

  706. Phages 2020 Virtual

    Muhammad Sohail, Conference Director

    09-10 September 2020 http://lpmhealthcare.com/phages-2020-virtual/ Twitter: @PhageOxford; Hashtag: #PhgOx20V Email: PhageOxford@gmail.com

    The themes and focus of the meeting will be all aspects of bacteriophage research, in particular bacteriophage application in medicine, food and biotechnology.

    The meeting will run over two days, with a 3-4 hour session each day, consisting of invited presentations by senior scientists, and submitted short presentations by emerging researchers and students. There will also be an opportunity to present posters digitally. We particularly invite emerging phage researchers – final-year doctoral students and early-/mid-career postdoctoral researchers/junior group leaders – to submit abstracts for short oral and poster presentations to benefit from this unique opportunity.

  707. Save the date for PHAVES!

    Phage Directory

    It's almost time for PHAVES: Phage Directory Virtual Event Series! (The acronym was too good; how could we not?)

    Save the date for June 16 at 8 AM Pacific Time (GMT-7) (details to come).

    And we're keeping signups open on a rolling basis, so go ahead and sign up if you'd like to present this summer. Or you can nominate your phaves for PHAVES, like some have already done. (Do that by email at events@phage.directory). See you on Zoom soon!

    Many thanks to Stephanie Lynch from the Helbig Lab at La Trobe University for helping us organize this series! Also it's her birthday this week! Happy birthday Stephanie!

  708. Sharing phage protocols: help others, help yourself

    Got phage protocols, or wish you did? The community can probably help!

    Here's an example from Twitter: "Hey, I'm working on phages and need to extract phage dna for characterization. Would you recommend Zymo kit for extraction? If not, which kit would work for me?" —@mart_1982 (Check the thread for responses).

    We also began collecting phage protocols in our Slack group, with plans for a phage methods compendium. The Slack community is now retired. Retirement notice.

  709. Shannon Slattery (University of Limerick, Ireland) and colleagues published a new paper in Scientific Reports describing the isolation of a Proteus mirabilis strain from wastewater harbouring an integrative conjugative element (ICE) containing a novel phage defense mechanism. Their findings suggest that ICE may be present in the environment without apparent selective pressures, and may improve bacterial survival in municipal wastewater.

  710. Apply to present in the Phage Directory Virtual Event Series!

    Phage Directory

    Sign up to present your research in the upcoming Phage Directory Virtual Events Series! And let us know who you'd like to hear from, or suggest a topic, via email: events@phage.directory.

    We'll be tailoring the format of these talks to each presenter/topic. Formats we're considering: research seminar, panel discussion, mini poster blitz sessions, one-on-one interviews, journal club, informal mixer, AMA (Ask Me Anything).

    We're already putting the summer schedule together, so please register your interest by June 5! And if you're interested in sponsoring, email sponsor@phage.directory and we'll send you details.

    And a very special thank you to Stephanie Lynch, who is helping us organize!

  711. Save the date for Episode Three of All About Phage Therapy!

    Vitalis Phage Therapy

    Tune in at 11 a.m. IST this Sunday, 24th May for a live discussion with Dr. Gopal Nath, who will talk to us about his experiences with clinical application of phage therapy, presenting phage therapy to medical regulators, and the century-old connection of phages to the river Ganges, which flows through the historic city of Varanasi, where he resides, and lots more!

    Catch the recordings of episodes 1 and 2 (interviews with Sanjay Chhibber and Mzia Kutateladze) here.

  712. Denish Piya (UC Berkeley) and colleagues at the Center for Phage Technology in Texas published a new paper in Scientific Reports on using genome-wide screens to identify Escherichia coli host factors required for propagation of two novel phages (T1- and V5-like). This is the first time genome wide screens have been done for these classes of phages. And what's more, these phages are available as components of a prebiotic, PreforPro.

  713. Apply to present in the Phage Directory Virtual Event Series!

    The phage community wants virtual events! We're working hard on answering that call.

    You can now apply to present your research, or nominate a speaker, topic or format via email: events@phage.directory.

    Formats we're considering: traditional research seminar + Q&A, panel discussion, interview, journal club, informal mixer, AMA (Ask Me Anything).

    And if you're interested in sponsoring, email sponsor@phage.directory and we'll send you details.

    We're starting soon, so stay tuned!

  714. James Doub (University of Maryland School of Medicine) and colleagues published their successful eradication of a 72-year-old man's prosthetic joint infection with phage therapy, which was done alongside Adaptive Phage Therapeutics and the US Naval Medical Research Center. Of note, the phage appeared to cause unusual effects on the patient's liver, pointing toward a need for clinical trials to optimize the dose of phage therapy and better understand its effects on the body.

  715. Oliver Bezuidt (University of Pretoria, South Africa) and colleagues published a new paper in mSystems that sheds light on Antarctic phage-host interactions. Their metagenomic analysis picked up DISARM, BREX and CRISPR-Cas defense systems in Antarctic polar deserts, and these directly correlated with the metavirome of these communities. Overall it seems that phage-host interactions are active and important here.

  716. Metagenomics is enabling discovery of millions of new viral sequences, but no tools previously existed to estimate their quality. Stephen Nayfach (DOE Joint Genome Institute) and colleagues created CheckV, an automated pipeline for assessing the quality of metagenome-assembled viral genomes. They validated the tool on public datasets and found that just 3.6% of viral sequences are high-quality or complete. Preprint | Tool.

  717. Seeking phage data for undergraduate Bioanalytical Phage course

    Maria Cambraia Guimaro, PhD, University of Maryland, Baltimore County

    I am a Postdoctoral Teaching Associate working for STEM BUILD, an undergraduate success initiative investigating ways to enhance the diversity and success of STEM students. We offer an 8-week Summer Course-Based Undergraduate Research Experience during their sophomore year. Initially, we were planning to have the students performing molecular biology experiments and chemistry analytical experiments about phages or their environments. Usually, the students perform some analysis, write an abstract, and present a poster at a local undergraduate symposium.

    As we will not be able to perform bench experiments on campus due to COVID-19, I am trying to get access to previously generated data related to phages (or to their original environment) to analyze with our students. I am seeking researchers willing to share any spare analytical data (chromatography, mass spectrometry, pH, samples moisture, cations, salt concentration, organic matter, microscopy images, etc) that can be used in our class. You would be included in any analysis or material produced by our students during this summer experience.    Additionally, is anyone aware of any online bank or open database where researchers deposit analytical/chemical data from phages? The data could be also related to the environment where these phages were collected (soil, water, etc) or any other analysis related to phages.

    If you can help, please contact me at cambraia@umbc.edu.

  718. Special Issue: Viruses of Microbes 2020

    Submissions are open to the special issue of the journal Viruses, "Viruses of Microbes 2020: The Latest Conquests on Viruses of Microbes".

    This issue is associated with the 2021 meeting from the International Society of Viruses of Microbes (ISVM) to be held in Guimarães, Portugal in 2021, and intends to be a platform for the latest advances on research of microbial viruses, from ecology and evolution, to virus structure and function, and from virus-host interaction to biotechnology applications and phage therapy. 

    ISVM members receive a 10% discount and a limited number of fee waivers is available. Please contact guest editors in advance by email about planned submissions. Guest editors: Tessa Quax, Marianne De Paepe, Karin Holmfeldt.

  719. Seeking European collaborator

    Emmanuel Nnadi, Plateau State University, Bokkos, Nigeria

    Would you be interested in collaborating on a grant fellowship application? I plan to apply for the EDCTP-TMA2020CDF - Career Development Fellowships on poverty-related diseases particularly evaluating the role of phage therapy in diarrhoeal infections with particular emphasis on E. coli. This will require a European partner to collaborate on this project.

    If you would be interested in collaborating on this project please freely reach me via email eennadi@gmail.com.

  720. Seeking Norwegian collaborator

    Jesca Lukanga Nakavuma (BVM, PhD), Makerere University

    We are applying for NORHED II grants and we wish to actualize the Eastern Africa phage research consortium aimed at establishing/upgrading a lab for in-depth characterization of phages, establishing a phage bank, and developing regional policies for phage applications. I am spearheading a proposal on phages against zoonotic pathogens from animal production systems.

    We plan to have Makerere University as the lead applicant for the Southern partners with others including someone from Ethiopia, Tanzania and Institute of primate research in Kenya. We must have a Norwegian collaborator. Establishing linkages with biological product companies for production at commercial scale is also important.

    Please contact JLNakavuma@covab.mak.ac.ug if you are interested.

  721. Upcoming Virtual Event: Phages for aquaculture

    Aquatic Biologicals

    We are excited to announce and share with you the forthcoming talk of the CEO and founder of Aquatic Biologicals, Dr. Pantelis Katharios, who is going to give a webinar through #EAStalk on "Phage therapy as an alternative treatment in aquaculture. Applications in fish hatcheries". If you are interested in getting further insights about bacteriophages and the great potential of phage therapy, make sure you mark your calendars for 26th May at 14.00 CET/Brussels time.

  722. Upcoming Virtual Series: All About Phage Therapy

    Vitalis Phage Therapy

    In these difficult times of pandemic lockdowns and quarantine, we bring you a series of discussions called "All About Phage Therapy". For the first discussion, senior microbiologist Prof. Sanjay Chhibber from Panjab University will be joining us on Facebook Live on Sunday, 10th May at 11 am Indian Standard Time. Join at https://facebook.com/VitalisPhageTherapy.

  723. An update on last week's Phage Alert

    Phage Directory

    Last week, we sent an urgent alert for phages on behalf of a patient in Finland with ESBL E. coli. The phage hunt was initiated by Mikael Skurnik and his lab at the University of Helsinki (read a nice profile on the Skurnik Lab's phage therapy work here).

    In the week since we sent the alert, we've already had 12 additional labs from 9 countries offer to provide or test phages. MANY thanks to all who have contributed to date! The Skurnik group (especially Saija Kiljunen) is working hard to ship out the patient's isolate to these labs, and in some cases shipments have already been received!

    Thanks so much to:

    • Mikael Skurnik and Saija Kiljunen / University of Helsinki (Finland; Original requesting team)
    • Ronen Hazan / Hebrew University of Jerusalem (Israel)
    • Heejoon Myung / Bacteriophage Bank of Korea (South Korea)
    • Adelaide Almeida / University of Aveiro (Portugal)
    • Emmanuel Nnadi / Plateau State University (Nigeria)
    • Austen Terwilliger / BCM Tailor Labs (USA)
    • Julianne Grose / Brigham Young University (USA)
    • Christophe Chatain / Vetophage (France)
    • Milan Bunata / MB Pharma (Czechia)
    • Boris Estrada / Fagenbank (Netherlands)
    • Lone Brondsted (Denmark)
    • Hedieh Attai / IPATH (USA)
    • Daniela Dias / Technophage (Portugal)

    Thank you also to the colleagues of the above; we've listed one person from each lab/organization, but of course they are not the only ones key to this effort. We appreciate all who take part in this important work!

    There's still time to get involved; reach out to staff@phage.directory if you can help.

  724. RNA phage request

    Jameel Ahmad Khan, PhD, Head R&D (IVD-Division), Trivitron Healthcare

    I am working on a COVID-19 RNA isolation kit. We are observing huge lab to lab variations in RNA yield among Pathology labs. Therefore, I am planning to use RNA phage Particles as internal control for RNA isolation. Can you please help me in sourcing M2 phage or any similar harmless/safe RNA phage for this purpose through your phage community network? jameel.khan@trivitron.com

  725. Seeking opportunity

    Hi, My name is Sunil Nawaz. I have M.phil in Microbiology degree with published research work. I have experience in blog writing, science writing, Academic teaching and Pharmaceutical Microbiology Lab. I am looking for a Job in a research group or a PhD studentship. I am also available for any roles in science publishing journals. If you think we can have a talk please contact me at sunilnawaz@gmail.com. You can also connect to me via LinkedIn. Thank you.

  726. Phages went to space, and now they're back! In a blog post, researchers from the University of Wisconsin-Madison and Rhodium Scientific describe their study of phage-host interactions and evolution in microgravity (using the spaceflight environment) vs. Earth. The study was sponsored by the International Space Station National Lab, which (literally) launched in February on SpaceX CRS-20, and returned to Earth last week.

  727. Want to mine prophage regions from large metagenomic datasets? Phigaro is a command-line application created by Elizaveta Starikova (Federal Research and Clinical Centre of Physical-Chemical Medicine, Russia) and colleagues. It detects prophage regions, makes prophage genome maps, and marks possible transposon insertion spots. Paper | Github.

  728. Seeking Research Partner in Portugal

    Hi I'm Prathaban Munisamy (Ph.D., Microbiology), working as Assistant Professor, in a deemed University in Tamilnadu, India. Ministry of Science and Technology, Govt of India, has called India-Portugal joint proposal of research. I would like to propose a project on Bacteriophage, for this I need a Portugal research partner jointly to apply for India-Portugal research program. Any suggestions or relevant information for the above said are highly appreciated. Email: mpmicrobial@gmail.com

  729. Seeking postdoc opportunity

    I am Kübra CAN, I am working at Istanbul University of Medicine Turkey, I am looking a postdoc researcher position for one year about phages, especially European countries. I have strong experience about clinical microbiology, phage isolation, phage therapy. My country Turkey will give me scholarship from TUBITAK for covering my salary and I need to apply an invitation letter. You can reach me by email at Kubra.can@istanbul.edu.tr or on Twitter @KbraCan72857683.

    Thank you so much for your help, Best regards Kübra CAN

  730. Crowdfight COVID-19 is seeking researchers with phage display expertise

    Task [590a] A researcher is exploring the possibility of using selected phages (instead of anti-bodies) to detect COVID-19 antigens in ELISA. Phages have been used earlier for ELISA with the advantage of lower cost, ease of production and greater affinity. He is looking for any researchers with experience in phage display to discuss these ideas.

    If interested, fill out the form here. Subscribe to hear about more Crowdfight COVID tasks here.

  731. Phage Directory’s Slack community (now retired)

    This week we introduced a new channel: #phage-manufacturing, for discussion of scale-up of phage preparations (challenges, opportunities, questions, helpful papers, etc).

    In March, we introduced a #covid-amr channel (read more about why here).

    We've also got a #phage-ai-ml channel (stay tuned for a new seminar series on this topic).

    The Phage Directory Slack community is now retired. Read the retirement notice.

  732. Simon Roux (DOE Joint Genome Institute) and colleagues published a new preprint on diversity-generating retroelements (DGRs), which were first identified in a phage host recognition protein. They analyzed >30,000 metagenome-derived DGRs, and gained many new insights about their evolution and likely role in driving viral and cellular adaptation to their environments. And check out this Twitter thread by Simon, which walks through the study and how cool it is!

  733. Susana Costa (University of Minho, Portugal) and colleagues published a paper in Scientific Reports on developing a novel flow cytometry assay for detection of Staphylococcus in blood culture samples based on phage-derived proteins. Utilizing a modified endolysin domain from phage E-LMI2 fused to green fluorescent protein, the assay is highly specific, sensitive and could contribute to early detection of bloodstream infections.

  734. Seeking phage for research

    Catherine M. Loc-Carrillo, MSc, PhD Director, Micro-Phage Epi Laboratory

    Dear phageophiles – I’m hoping that one of you has or knows someone who has Pseudomonas phi6 (ATCC 21781-B1). I’m trying to get hold of this phage so I can use it as a control for some of our experiments. The ATCC no longer has that phage in stock – they didn’t say why. I don’t need the bacterial host as I have that in my lab so shipping phage should be less of an issue. I’ll be happy to use my FedEx account so it doesn’t cost you anything. Sincerely, Catherine lockeyphage@yahoo.co.uk

  735. The phage community may have a key role to play in the ongoing COVID-19 crisis. Patients hospitalized with respiratory viruses including flu and this current coronavirus get bacterial co-infections, and these co-infections correlate with mortality. Not to mention, the AMR crisis is predicted to worsen as antibiotics are increasingly given to COVID-19 patients around the world. This conversation took place in the #covid-amr channel of our Slack community, which is now retired. Retirement notice. Here are the resources the community has collected so far.

  736. HHMI's Science Education Alliance, Gene-function Exploration by a Network of Emerging Scientists (SEA-GENES) project is designed to expand the work conducted in the SEA-PHAGES course. In the SEA-GENES project, students will generate expression libraries for phage genes, test the ability of phage gene products to modulate host phenotypes, and screen phage gene products against the host proteome to identify putative host targets. Here, Western Kentucky University describes its invitation to participate.

  737. A warm welcome to our new volunteers!

    Phage Directory has three new volunteers! Please welcome Lauren Dunlop, Dr. Rohit Kongari and Lizzie Richardson! Lauren helps us behind the scenes with things like finding out about grants we can apply for. Rohit and Lizzie are currently helping us with Capsid & Tail: finding cool phage articles, jobs and anything else the phage community should know about. Thanks so much to each of you, we are incredibly grateful for your hard work and enthusiasm!

    Also, we'd also like to acknowledge all of our Capsid & Tail guest writers and social media assistants we've had to date; these are all volunteers too!

    Thank you to all of you for helping us keep our community informed and inspired!!

  738. Viruses of Microbes 2020 Conference Update

    On account of the current situation of worldwide spreading coronavirus SARS-CoV2, the organising committee might have to consider post-postponing Viruses of Microbes 2020, initially planned to take place on the 13-17 July. However, due to the uncertainty related to the effect of this worldwide spreading, it would be too premature to set now a new date. As a result we have decided to: i) Extend the abstract submission period until the end of April; ii) Suspend, for now, registration.

    We will of course continue monitoring the situation concerning COVID-19 and as soon as we have a clearer picture of the situation we will update this information.

    On behalf of the Organizing Committee, Joana Azeredo and Madalena Pimentel

  739. Seeking interviewees

    Dr. Minmin Yen, PhagePro

    We're looking to explore the whole ecosystem of diarrheal disease prevention in low- and middle-income countries through short video interviews. We would particularly welcome those who are working on developing phage products in resource-limited settings. We'd love to hear your stories. Please get in touch by email (myen@phageproinc.com) if you’re interested in talking to us (we're looking to conduct interviews before April 10). Thank you for giving us your precious time, and we appreciate hearing your insights!

  740. Seeking Mycobacterium phages

    We have a cow we suspect has Johne's disease (Mycobacterium avium paratuberculosis infection). Does anyone have phages for this bacteria that might also infect M. smegmatis? Currently, there is no treatment; vaccine was discontinued in US and antibiotics would cost 50X the price of the cow. Normally you just cull the infected cattle and then need to test/monitor herd. So I figured being a phage researcher I might as well try... Please email mathieu@rice.edu.

  741. Germán Bonilla-Rosso (University of Lausanne, Switzerland) and colleagues published a new paper in PNAS on the honey bee gut virome. They show that a diverse community of phages inhabits the bee gut, that these phages target core bee gut bacteria, belong to new viral genera, and have a large repertoire of unknown functions.

  742. Boston PFU Meeting Postponed

    Siân Owen, Harvard University

    Hello everyone, Due to pesky eukaryotic viruses, next week’s PFU meeting will be postponed. On the bright side, last week we received some funding from New England Biolabs to continue catering the meetings, so you can look forward to the resumption of PFU meetings with food and beers later in the year. Stay sane, Siân

  743. Seeking Phi6 and MS2 phages for research

    Karen Kormuth, Bethany College

    I'm hoping to use Phi6 and MS2 as a surrogate model system for studying infectious disease transmission. I previously worked at Pitt on influenza viruses, so I'm new to the phage community. Because we're such a small college, I have an extremely limited budget and can't afford to purchase the commercial phage. Are there any researchers out there who might be willing to share Phi6 and/or MS2 with my lab? Please contact me at kkormuth@bethanywv.edu if you can help.

  744. VoM COVID Policy Announcement

    Dear colleagues,

    We are working towards the VoM2020, which is planned to take place on the 13-17 July, in the consideration that the situation will be solved by that occasion. The Organizing Committee is naturally closely monitoring the situation concerning COVID-19 through both the daily situation reports from the World Health Organization and the Portuguese Health Authorities.

    If, in the unlikely situation the COVID-19 outbreak will not be solved in July, we may consider postponing the meeting but never cancelling it.

    The dead-line for abstract submission will be extended to 30th March. Please visit our website www.vom2020.org

    We look forward to welcoming you in Portugal in July 2020,

    Joana & Madalena On behalf of the organizing committee

  745. Carmen Gu Liu (Baylor College of Medicine) and colleagues published a new preprint on phage-antibiotic synergy. They've created a comprehensive method for evaluating synergism, additivism, and antagonism for all antibiotic classes, (they're calling it "synography"). They found that phage-antibiotic synergy is dependent on antibacterial mechanism of action, leads to reduced phage resistance emergence, is driven by phage burst size, and can be suppressed by serum and urine.

  746. Paul Kirchberger (UT Austin) and colleagues published a new paper in eLife showing the resurrection of Gokushoviruses, barely-understood single-stranded DNA phages found in metagenomic datasets worldwide, in an experimentally tractable model system. They show that the virions can infect, lysogenize and persist cytoplasmically without collapsing their host cultures.

  747. Anushila Chatterjee (University of Colorado School of Medicine) and colleagues published a new paper in mBio investigating Enterococcus faecalis interactions with a virulent phage. They highlight roles for polysaccharide antigens and DNA mismatch repar in phage infection, and show that infection alters quorum sensing and polymicrobial competition gene expression. They conclude that phages can influence complex microbial behaviour that could have important collateral effects on communities.

  748. Fernando Gordillo Altamirano (Monash University, Australia) and colleagues have published a new preprint on Acinetobacter baumannii phage resistance. They found that phage-resistant mutants were sensitive to complement, other phages, and antibiotics, and had reduced ability to colonize mouse blood and tissues. Plus, Jeremy Barr, who supervised this research, posted an informative Twitter thread explaining the paper!

  749. DeepPetri is an AI-based tool by Phages4A that semi-automatically determines, measures, and categorizes lysis zones of images of phage spot tests. Sign up to be notified when they launch, and stay tuned to take part in a survey looking at how comparable researchers' current phage-counting methods are.

  750. Alexandra Petrovic Fabijan (Westmead Institute for Medical Research, Australia) and colleagues published their safe IV treatment of 13 critically-ill, septic patients with a GMP-prepared S. aureus phage cocktail in Nature Microbiology. Jon Iredell and Ruby Lin, who led the project, take us behind the scenes with two blog posts: Jon's perspective as a physician on where phage therapy needs to go, and the team's plans to build a phage biobank to supply matched phages to clinicians and researchers.

  751. A thank-you to the international phage community

    7-year old Australian patient successfully treated with community-sourced phages

    The staff of the Infectious Diseases and Orthopaedics departments of the Children’s Hospital at Westmead and the Westmead Institute for Medical Research Iredell lab (Westmead Bacteriophage Therapy Team, New South Wales, Australia) would like to thank the international phage community for their overwhelming generosity in 2019 when a request was made through Phage Directory for compassionate access to phage products to treat our young patient with chronic osteomyelitis of the foot due to a multi-resistant Pseudomonas aeruginosa infection.

    Our patient was treated for two weeks with a single phage in October 2019 and tolerated the treatment well. There was symptomatic improvement following the completion of treatment and although she continues to be treated with intravenous antibiotics, the potential need for amputation is currently deferred. There are currently no plans for further courses of treatment with phage for this patient unless there is further clinical deterioration.

    We would like to thank the phage contributors: Adaptive Phage Therapeutics, Ran Nir-Paz, Ronen Hazan, Rob Lavigne, Jeroen Wagemans, LyseNTech, Nikoline S Olsen, Witold Kot and Lars Hestbjerg Hansen.

  752. PATRIC/RAST Bacterial and IRD/ViPR Viral Workshops

    The new Bacterial-Viral BRC (BV-BRC), a collaboration between the PATRIC/RAST and IRD/ViPR teams, will be offering a joint bacterial and viral workshop from March 23 through 27 at Argonne National Laboratory in the suburbs of Chicago, IL.

    The first 2.5 day section, Mar 23-Mar 25 Noon, will focus on bacterial data and analyses, using the PATRIC/RAST system: Draft Agenda.

    The second 2.5 day section, Mar 25 Noon-Mar 27, will focus on viral data and analysis, using the IRD and ViPR systems: Draft Agenda.

    Register here and direct questions to Lisa Hundley.

  753. Apply to host Viruses of Microbes 2022!

    The Viruses of Microbes (VoM) conference is the official meeting of the International Society of Viruses of Microorganisms (ISVM). We are pleased to open the call for organizing the next VoM conference, to be held mid-2022.

    Prospective organizers should first register by email to the ISVM secretary Tessa Quax. They will then receive an application form and a guidance to build the meeting budget. Complete application forms must be submitted by email by 30 April 2020.

    Applications will be reviewed by the ISVM board and the selected organizers will be invited to present their application during the General Assembly of our Society on the upcoming VoM conference in July 2020 in Portugal. We welcome applications from researchers worldwide. Please note that we also welcome interest to organize the VoM meeting planned for mid-2024.

    Best regards, Corina Brussaard, President of ISVM (on behalf of the ISVM executive board)

  754. In Memory of Jim Hu

    Sadly, Dr Jim Hu, a founding member of the Center for Phage Technology at Texas A&M University, has passed away. He was great scientist, dedicated mentor, and valued member of CPT and TAMU. — Center for Phage Technology, Twitter

    Jim was passionate about microbial genetics, the application of high throughput data and analysis tools to explore bacterial physiology, and the development of community-based resources. He also developed a two hybrid system for studying protein:protein interactions in E. coli, based on the phage lambda repressor. His warmth, wit, and friendship will be greatly missed.— Gail Christie, Phage Page, Facebook

  755. Australia is becoming a hotspot for phage therapy research and innovation. In this in-depth Sydney Morning Herald feature, Jeremy Barr describes his role in Tom Patterson's phage therapy case (Jeremy now runs his own phage research lab at Monash University, and was awarded $800K in grant funds), Jon Iredell's Critical Infection/BARRD group at the Westmead Institute describes how they treated 14 critically-ill patients with phages, and much more!

  756. Save the date for Viruses of Microbes 2020, which will be hosted in Guimarães, Portugal July 13-17, 2020.

    Also, students and postdocs, stay tuned: Phage Directory will be giving out travel awards!

  757. Phages have been in the news around the world this week! Phage therapy made the cover of Maisonneuve, a quarterly Canadian magazine (subscription required), Quanta Magazine did an in-depth feature on how phage resistance evolves differently in different microbial contexts, Arab News, a Saudi-Arabia-based newspaper, published a phage therapy/AMR article, and Dunya News, a Pakistani news outlet, published an article on the importance of considering phages as part of the microbiome.

  758. Cytophage Technologies is an up and coming phage biotech company out of Winnipeg, Canada: here's an introduction (including how the founder treated his own foot with phages, and plans to start by breaking into the poultry market). News story: Financial Post

  759. Biocrusts are photosynthetic hotspots in deserts that face an uncertain future due to climate change-induced changes in rainfall. Marc Van Goethem (Lawrence Berkeley National Labs) and colleagues have published a study in mBio characterizing phage-host dynamics in response to biocrust wetting. Their results suggest that phages control populations of spore-forming bacteria in biocrusts, and that phages may influence and even benefit from host sporulation dynamics.

  760. The VEGA Symposium will happen March 22-23, 2020 in Oakland, CA. Hosted by the Joint Genome Institute, the goals are to bring together a “Viral Ecogenomics” community to foster discussion on how to capture and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, and explore applications of viral genetic diversity. Confirmed speakers include Jennifer Doudna, Karen Maxwell, Mart Krupovic and more. Earlybird registration ends Dec. 31.

  761. Phage Directory visits Eastern Canada: a million thanks to all our hosts!

    Thanks so much to Sylvain Moineau at Laval University, David Speicher at McMaster University, and Hany Anany at Agriculture and Agri-Food Canada for hosting us these last couple of weeks! It's been fantastic to have the opportunity to present to your teams and departments on what we've been learning from the phage community, and what we're working toward! And it's been incredibly inspiring learning about your phage work, plans, ideas and progress. We can't wait to come back!

  762. Applications for the Pharmabiotics 2020 Young Investigators Awards are now open! This is a co-initiative by the Pharmabiotic Research Institute (PRI) and Institut Mérieux. An award of €10,000 will be allocated to a young clinician or academic working within the field of microbiotic medicinal products. If you have less than 15 years of clinical practice experience and serve in a hospital or research/academic institution, submit your application by January 12, 2020.

  763. Seeking optimised protocol for isolation of phages from seawater samples

    I am working on isolation and characterisation of marine phages for anti-bio fouling activity. Our lab has assessed the influence of chlorine on different marine microorganisms as well as barnacles, and now we are looking into use of marine bacteriophage therapy for targeting the biofilms involved in microfouling which leads to macrofouling.

    I am optimising a protocol for isolation of phages from marine water samples, but somewhere I am making mistakes, leading to negative results. Could anyone please share their optimised protocol for isolation of bacteriophages from sea water samples? Until now I have used a protocol which includes dilution of filtered sea water with 2X culture broth and overnight grown pure culture, but I am looking for an alternate protocol.

    Please email me at atifbhu91@gmail.com if you can help.

  764. John Rex, MD (Chief Medical Officer for Wellcome Trust) has written a blog post about a new paper published by Ursula Theuretzbacher and colleagues on the global pre-clinical pipeline for antibacterials. It shows that as of May 2019, 33/407 preclinical projects were focused on phages or phage-derived therapeutics. Rex mentions that non-traditional antibacterials (like phages) will face substantial hurdles, and describes in a new paper how non-traditional antibacterial development programs should be designed.

  765. Steven Swift (Beltsville Agricultural Research Center) and colleagues have engineered a chimeric phage lysin that lyses Clostridium perfringens, an important poultry pathogen. They fused the cell wall binding domain of a C. perfringens phage lysin to the enzymatic domain of a Geobacillus phage lysin (a deep-sea thermophilic phage). This resulted in a thermostable C. perfringens-specific lysin that may be able to be added to poultry feed to control this pathogen.

  766. PhD student seeking unpaid 3 month industry placement

    Rebecca Quinn, University of Warwick

    My name is Rebecca Quinn, I'm a PhD student at University of Warwick, researching phage genetics. I'm funded by the BBSRC, and under the direction of Dr Richard Puxty.

    I have funding for a 3 month work placement/internship in Summer 2020 (there is date flexibility). The placement cannot be lab-based, but all other departments (HR, IT, marketing, etc) are suitable.

    I have the right to work in the UK/EU, Canada, and the US and am location-flexible.

    Please email me at rebecca.quinn@warwick.ac.uk if you know of any opportunities! Thanks.

  767. Felix Biotechnology is a new phage company using phages to target antibiotic resistant bacteria based on their mechanism of antibiotic resistance (working with Yale University). They just won this year's Falling Walls Venture competition in Berlin, and have been named Science Startup of the Year! (Watch their 5-min pitch here)

  768. Gabriel Almeida (University of Jyvaskyla, Finland) and colleagues have published a paper showing that phages of the fish pathogen Flavobacterium columnare bind to mucus, providing new support for the 'bacteriophage adherence to mucus' (BAM) model. What's more, they saw that mucus increased bacterial virulence and phage susceptibility, suggesting an interesting ecological trade-off. And as a useful side-note, this study led to a solution for a decades-long struggle to propagate F. columnare phages in the lab - just add mucus!

  769. Yi Duan (UCSD) and colleagues have published an incredibly exciting paper showing that cytotoxin-secreting Enterococcus faecalis in the mouse gut is a cause of alcohol-induced liver disease in mice. Most excitingly, they used phages to target cytotoxin-positive E. faecalis, and found that this abolished alcohol-induced liver disease in the mice! This is a great example of what microbiome-editing could look like, and shows the potential promise of phages (next step: testing this in humans). Paper | Commentary by Martha Clokie

  770. Diane Shader Smith wrote a beautiful article commemorating the two-year anniversary of her daughter Mallory’s passing. Mallory passed away due to drug-resistant Burkholderia and cystic fibrosis. Diane remarks that Mallory's legacy lives on both through her writing and through phage therapy, which might have saved her if she'd had more time. Mallory's father Mark envisions a day where kids with CF can receive phage therapy before infections destroy their lungs. The Smith family made the inaugural donation to UCSD's IPATH in 2018.

  771. Seeking Post Doctoral Research Fellowship

    My name is Dr. Adamu Kaikabo Ahmad, currently working at National Veterinary Research Institute Vom, Nigeria. I hold a degree in Veterinary Medicine, and Master degree in Veterinary Science. I obtained my PhD in Bacteriology and Food Safety in 2016. My PhD thesis was on phage therapy against colibacillosis in chickens, an infection caused by avian pathogenic Escherichia coli (APEC). I’ve isolated and characterized numerous phages against E. coli, Riemerella anatipestifer, Aeromonas hydrophila. Looking for a postdoctoral position. Contact karkafa@yahoo.co.uk.

  772. Why do bacteria evolve CRISPR-based phage resistance in natural environments, while in the lab, they seem to more readily evolve receptor-based resistance? Ellinor Alseth (University of Exeter) and colleagues have published a new paper digging into this discrepency. Their results show that in the presence of other human pathogens, the fitness consequences of altering phage receptors are higher. This likely explains why in vivo, CRISPR-mediated resistance is the type of phage resistance more commonly observed.

  773. Engineering phages is getting more popular; here's another breakthrough in phage synthetic biology! Matthew Dunne (ETH Zurich) and colleagues have developed several approaches for engineering phages targeting Gram-positive pathogens (using Listeria as a model), including structure-guided design of phages with chimeric receptor binding proteins (RBPs), as well as RBP mutagenesis approaches that do not require prior knowledge of RBP structure or its receptor epitope.

  774. Is lyophilization a good way to store phages? Prasanth Manohar and Nachimuthu Ramesh (Vellore Institute of Technology) tested lyophilization conditions for three phages (an Escherichia phage, a Klebsiella phage and an Enterobacter phage) using different excipients (vehicles), including glucose, sucrose, gelatin, mannitol, polyethylene glycol, and sorbitol, as well as different post-lyophilization storage temperatures. They looked at viability of phages over time, and showed that sucrose, gelatin and 4°C storage helped maintain phage viability for up to 20 months.

  775. It's Capsid & Tail's one-year anniversary this week! We sent out our first issue on Oct 18, 2018. Since then, we've published 48 issues, including 13 guest articles (authored by 23 guest authors). We've grown to over 600 subscribers, with a handful of new people joining us each week. We've sent out 62 messages on our phage community board, and we've highlighted 68 phage jobs.

    Thank you all so much for reading, suggesting Capsid & Tail to others, and for offering feedback and cheering us on throughout the year! And thank you VERY much to all of our stellar guest writers. It's been great fun to put this together each week!

    In our second year, we hope to see more guest articles, more collaborations sparked through the community board, and to find more new ways we can experiment with Capsid & Tail each week. You can find past issues here.

    The guest-writing schedule and public board described in this 2019 update are retired. Today, you can send a story idea or post a community tip, job, or event for editorial review.

  776. We've been talking about NIAID's new request for applications for phage research; here's the complete funding opportunity announcement. This is an R21 grant mechanism (no clinical trials allowed). NIAID intends to commit $2.5 million in FY 2021 to fund 6-8 awards. Submit between Feb 18, 2020 and March 18, 2020. And thanks to those who've identified yourselves as being interested in finding collaborators to apply for these funds; we will reach out to you soon to introduce you to each other.

  777. New research by Andrey Shkoporov and colleagues at APC Microbiome in Ireland has shown using longitudinal metagenomics that the human gut virome is actually very stable in individuals, but that each individual tested had their own unique virome. Plus, they identified several groups of crAss-like and Microviridae phages as the most stable human gut colonizers, and were able to find connections between stable viral communities and gut bacteria using CRISPR-based prediction. Paper | News article

  778. Siobhán O'Brien of the University of Liverpool and colleagues published a paper showing how transposable prophages lead to P. aeruginosa adaptation. They alter iron availability to show that transposable prophages cause P. aeruginosa to evolve toward extreme siderophore production phenotypes. Their work suggests that prophages can mediate evolutionary divergence of social strategies, which wasn't clear before.

  779. Check out this new podcast interview (The Life Scientific, by BBC Radio 4) with Martha Clokie, a University of Leicester phage professor. She talks about how her interests in botany as a child turned into interests in phages. This is a great listen, and really gets into how Martha's research has progressed over the years (including how hard it was to find C. difficile phages, the strange places she looked, and her thought process throughout).

  780. Related to the new NIAID request for applications (RFA) for phage studies, here's a videocast of the NIAID council meeting where they discuss their phage interests and why they're going to fund phage studies now and in the future. Start watching at around the 1:01:00 mark; they talk about phage for around 20 min. Also, Jane Knisely is the person to email about this RFA. If you'd like to work with other phage groups to put together a proposal, email us at capsid@phage.directory and we'll do our best to connect you with others in the same boat.

  781. Kevin Yehl of MIT and colleagues have developed a high-throughput strategy to genetically engineer host range-determining regions within phage tail fiber proteins to create libraries of millions of phages with different receptor binding capacities. They showed that "phagebodies" could limit E. coli in a mouse wound infection model, and they did not observe emergence of phage-resistant strains. Cell Host & Microbe Paper | News article

  782. Seeking postdoctoral position

    Dr. Soleimani

    I am seeking a research position in phage therapy or molecular phage studies. I hold a Ph.D from Shahid Beheshti University, Tehran, Iran (Department of microbiology and microbial biotechnology, faculty of life sciences and biotechnology).

    My thesis was entitled “Isolation of a lytic bacteriophage effective against Multidrug-resistant (MDR) Klebsiella pneumoniae and the potential of phage therapy against infection in a mouse model” under the supervision of Prof. Fereshteh Eftekhar. During my Ph.D. project, I have experienced almost all the necessary techniques and methods for phage study, phage therapy and lung infection studies in animal models. I am looking for a postdoc or research scientist position. Please contact me at mah.slmn@yahoo.com.

  783. Seeking collaborators for phage characterization studies

    Emmanuel Nnadi, Plateau State University, Bokkos, Nigeria

    My lab started isolation of phages from hospital environment, so far we have isolated a phage effective against E.coli and working on phages against P. aeruginosa. As a small unfunded lab we are not able to characterize and store for very long because of electricity. So we are open to collaboration. Any lab willing to collaborate to store and characterize our phage and also open to further studies are welcome. Please email me at eennadi@gmail.com.

  784. Looking to meet phage scientists, find companies offering EM services, and find out about phage conferences

    Dr. Ritah Nakayinga, Kyambogo University, Uganda

    Hello passionate phage scientists, My name is Dr. Ritah Nakayinga and I will be starting phage research, early 2020, at Kyambogo University, Uganda. My research is funded by IDRC/OWSD. I will be developing an effective phage bio-control against the Banana wilt disease of the Banana crop and a major staple food crop in Uganda. I would like to network with phage scientists with similar research interests, get information about companies that offer affordable electron microscopy services and any upcoming future phage conferences in 2021. Reach me at: nakayingar@gmail.com.

  785. Seeking PhD position

    I have a master's degree in microbiology. I defended my thesis with the title of 'Isolation and Identification of Specific Viruses Isolated from the Microbial Corroded Place in the Petroleum Industry' with the best grade. The title of one of my articles that is published in Anti-Corrosion Methods and Materials Journal is 'Phage therapy of corrosion-producing bacterium Stenotrophomonas maltophilia using isolated lytic bacteriophages'.

    I am keen to work in microbiology, bacteriophages (phage therapy) and biotechnology. Please email me at arezoopedramfar@yahoo.com if you are interested.

  786. Welcome new Phage Directory members!

    Between July 26 and Sep. 30, we welcomed:

    • 16 phage professionals Ael Hardy, Anna Dragos, Cesar de la Fuente, Christine Thompson, Fatma Abdelrahman, Francesca Hodges, Geoffrey Hutinet, Hardian Susilo Addy, Jared Schlechte, Jonas Van Belleghem, Karen Weynberg, Ligia Ayala Navarrete, Milan Bunata, Nayeem Bari, Sam Nugen, Tim Blower.

    • 4 phage research labs KeRis Terapi Bakteriofag, Blower Lab, Food Micro Lab, Nnadi Lab

    • 9 phage companies Bacteriophage & Drug Development Consultants, Cellexus, Clean Cells, Jafral, MB Pharma, PhagoMed Biopharma, PhagePro, SciPhage, Vetophage.

    The researcher, lab and organization signup forms accompanying this update are retired. Profile editing is currently by invitation.

  787. Invitation to submit to "Phage Diversity for Research and Application” issue of Antibiotics

    Dr. Christine Rohde

    I recently accepted to serve as Guest Editor for the Special Issue “Phage Diversity for Research and Application” of the journal Antibiotics. I would be very pleased if you agreed to contribute a research paper, or a comprehensive review on any research aspect related to phage diversity. The deadline for manuscript submissions is 1 June 2020. The articles will be published upon acceptance, on an ongoing basis.

    Antibiotics is a peer-reviewed open access journal on all aspects of antibiotics. It has an impact factor of 2.921 and is indexed in SCIE (Web of Science), Scopus, and PubMed. The Article Processing Charge of 1200 CHF applies to all papers accepted after peer review.

    In order for us to plan this Special Issue, we kindly ask you to inform us as to whether you are interested in contributing to this issue.

    Many thanks, Christine Rohde

  788. Seeking postdoctoral position

    Dr. Pallavali Roja Rani

    I am seeking a post-doctoral position related to Bacteriophage therapy, Antibiotic Resistance and Biofilm studies. The main objective of my Ph.D. thesis was to study the predominant bacterial isolates of septic wound infections, isolation and characterization of bacteriophages against biofilms of multi drug resistant P. aeruginosa, S. aureus, K. pneumoniae, and E. coli, and application of respective bacteriophages and phage cocktails on the single & dual species biofilms of these predominant bacterial isolates of septic wound infections. Please email me at p.rojarani.virology@gmail.com if you know of any opportunities.

  789. Jolien Onsea and colleagues from KU Leuven, University Hospitals Leuven, and the Queen Astrid Military Hospital in Belgium successfully used phage therapy to treat four patients with severe musculoskeletal infections. Importantly, the authors developed a standardized treatment protocol for use of phages to treat similar infections. This includes assembling a "multidisciplinary phage task force" consisting of infectious disease specialists, pharmacists, microbiologists, surgeons, and phage scientists, and documenting all results in a database to inform future studies.

  790. Hans Duyvejonck and colleagues at Ghent University and the Queen Astrid Military Hospital in Belgium have published a paper evaluating the use of qPCR to quantify 5 phages within a cocktail. They compared qPCR to plaque assays, and showed that the qPCR/plaque assay ratio was phage-specific and reproducible. Their results suggest that if a qPCR/plaque assay ratio is determined for a given phage, qPCR can be reliably used to approximate numbers of infectious particles, which could save a lot of time in (especially clinical) phage studies.

  791. Seeking graduate research position

    I am Ritam Das, a third year undergraduate student studying Life Sciences at Acharya Narendra Dev College, University of Delhi. I’ve been actively working at the Anti-Mycobacterial Drug Discovery Lab of our college under the guidance of Dr. Urmi Bajpai since December 2018, wherein I am trying to isolate, purify and characterize Mycobacteriophages and phage-derived proteins. Currently, I’m looking for graduate programs (Masters/Masters-PhD integrated) at institutes working on bacteriophages. I wish to apply as a full-time student and to associate myself with a lab to explore phages and phage-derived enzybiotics as credible alternatives to antibiotics. Please contact me at ritamdas007@gmail.com if you know of possible opportunities.

  792. Seeking graduate research position

    I am Uchenna Precious Nnadi, a graduate of Veterinary Medicine from the University of Nigeria, Nsukka. I am looking for a graduate mentor that will accept to supervise me to develop into a fantastic phage researcher and to provide impactful research and skill to my local community and country, thereby enabling me to grow into a great scientist that will meet local and global issues that relates to health. Please contact me at nnadi.ucheprecious@gmail.com if you know of possible opportunities.

  793. Next week (Wed-Thurs; Sept 25-26), we'll be at the Phage Futures EU conference in Brussels, and we won't release a Capsid & Tail issue. Instead, we'll be hosting Phage Futures Live on our site. Tune in to keep up to date with the conference, which will cover progress toward phage therapy commercialization around the world.

    Thanks in advance to our two social media assistants who'll be accompanying us to the event: Aël Hardy (@ael_hardy) and Francesca Hodges (@fhodges_)!

  794. At the end of 2018, Phage Directory helped coordinate a phage sourcing effort on behalf of a patient in Helsinki. More than 10 labs around the world sent or tested around 200 phages. As of today, some of the results of this effort have been published! The paper describes the genomic characterization of two of the phages isolated for their ability to lyse the patient's isolate. The paper was coauthored by Ortal Yerushalmy and colleagues in Ronen Hazan's group at the Hebrew University of Jerusalem and by members of Mikael Skurnik's group at the University of Helsinki.

  795. Armata Pharmaceuticals has developed a new synthetic phage candidate targeting P. aeruginosa to treat serious respiratory infections, with an emphasis on cystic fibrosis patients. The cocktail, a mixture of synthetic and natural phages, has been elevated to the lead clinical candidate in their pipeline, and clinical trials to test its efficacy are being planned in both the US and Europe.

  796. Seeking research exchange opportunity

    Fatma Abdelrahman

    My name is Fatma Abdelrahman and I have BSc in Microbiology from the Faculty of Science, Zagazig University, Egypt. I'm currently a research assistant at the Center of Microbiology and Phage Therapy, Zewail City of Science and Technology, Egypt. My first paper about phage encapsulation is here.

    I am looking forward to obtaining an internship or research visit in the fields of phage therapy, phage lysins, other phage-derived enzymes or related topics. I'm planning to pursue my master degree on these topics and I have chosen it to be my future research area.

    If there are no fully funded research grants, there are several local institutions which can aid in providing adequate grants upon being accepted.

    Please contact me at fabdelrahman@zewailcity.edu.eg

  797. Seeking postdoctoral research opportunity

    Dr. Kübra Can

    I am seeking a research position in phage therapy or moleculer phage studies. I hold a PhD from Istanbul University (Institute of Health Sciences, Medical Microbiology Department).

    I have strong experience in clinical microbiology, bacteriophage therapy and animal disease models. I am interested in clinical microbiology and crosstalk between organs in mouse models. I am also eager to learn and implement new methods and NGS data analysis for future studies.

    Please contact me at kubra.can@istanbul.edu.tr

  798. An interdisciplinary research team at Georgia Tech and the Institut Pasteur has received a 5-year, $2.5 million NIH grant to study phage-immune interactions during treatment of respiratory infections with phages. The team is led by Joshua Weitz at Georgia Tech (computational modeling of phage-host-immune dynamics) and Laurent Debarbieux of the Institut Pasteur (phage therapy animal studies). If you want to work on this project, scroll down to see two new postdoc positions you can apply for!

  799. We've known for a while that Vibrio cholerae makes cholera toxin because of a phage, and that the phage's receptor is Vibrio's toxin coregulated pilus (Tcp). But how does the phage actually get in? Here's a new paper by Miguel Gutierrez-Rodarte and colleages from Simon Fraser University in Canada that provides evidence that the tip of the CTX phage interacts with the tip of the pilus, followed by the phage being brought in as the pilus retracts!

  800. Seeking collaborators for in vivo lung infection studies

    Dr. Swapnil Ganesh Sanmukh

    I am Dr. Swapnil Ganesh Sanmukh, presently working on my postdoctoral project (funded my MSCA-COFUND) entitled "Isolation of bacteriophages and lytic enzymes for targeted treatment of chronic bacterial lung infections". I am looking forward to have collaborations for in-vivo studies. Please email me at swamukh1985in@rediffmail.com

  801. Community Q&A: Removing phages from liquid?

    Question: Hello phage people, does anyone have an improved method to physically remove #phages from liquid broth? Thank you! — @PetrovicFabijan

    A subset of the answers to date:

    • We use Amicon filters in my lab to concentrate phage and we’ve noticed that’s there’s a significant amount of phage in the filtrate with the 100 KDa membrane. To remove phage, a different cutoff might be more suitable. —@Z_Doust

    • High protein binding 0.1 um filters —@raw9371

    Check the tweet thread for more answers as they come in!

  802. We've already sent out two emergency phage alerts this week! If you can help, we're looking for Acinetobacter baumannii (patient in India) and Pseudomonas aeruginosa (patient in Australia). Please email staff@phage.directory ASAP if you can send phages or receive the patient's strain to test your phages.

    Many, many thanks to the 11 labs (from 11 countries!) who've offered to help so far! We're incredibly impressed with the phage community right now!

  803. Community Q&A: Storing phages?

    Question

    Any advice on how to store phages/ viruses? I know there are quite a few methods for long-time storage but I'd like to hear your advice. Thanks! 😀 — @LeptihnLab

    A few of the answers:

    "Easiest way that our lab uses is to make a high titre lysate. You can clean this via ultra-centrifugation into SM buffer, and store long term at 4C. Option to add 0.1 volume chloroform if concerned about sterility. Most phages will keep for decades using this approach [...] See our methods paper on this" — @JeremyJBarr

    "Will depend on phage and phage-host system. -80 glycerol stocks of phage - needs testing for phage. Or -80 stock of cells that are infected .Or in SM buffer @ 4 if above dont work .Some phage are sensitive to this as well. Can ad CHCl3 to lystates for storage -check CHCl3 first!" — @milja001

    "One thing we do is use a modified version of Graham Hatfull’s (@GHatfull) approach for BRED where we extract the genome with phenol chloroform. Can be used later to electroporate back into the host if the phage is unstable. Works good for med genomes <90kbp" — @Phage4Lyfe

    Check the tweet thread for more replies as they come in!

  804. What's the path forward when it comes to phage therapy? According to Shawna McCallin of the University Hospital of Geneva and Phages4All, clinical data is the priority, but it won't be enough.

    "The recent bankruptcy of Achaogen, a biotech producing a clinically-proven antimicrobial, is reason to heed caution that proof-of-efficacy is not enough to ensure viable commercialization.”

    Read Shawna's perspective piece here, and chat with her in person next month at Phage Futures EU in Brussels! (Use registration code PD10 for 10% off!)

    Shawna Kisaco Poster

  805. Student project: Phage Field Expert Survey

    Olympia Alvarez and Taehoon Ha — California State University, San Marcos

    We are MPH graduate students from California State University, San Marcos, and this survey is for our capstone project on phage therapy. Due to the limited human clinical cases in the literature, we were advised to interview/survey phage experts in the field. The questions pertain to how/whether phage therapy is done in your area, and your thoughts and recommendations regarding phage therapy. We hope to collect responses between now and early/mid September.

    Survey: https://www.surveymonkey.com/r/B6K8BK2

  806. A new paper published by Zachary Storms and colleagues in the Sauvageau lab at the University of Alberta describes a method for high-throughput quantification of phage virulence that can be applied to phage screening, evaluation of phage strains, phage mutants, infection conditions, susceptibility of host strains, and phage cocktail formulation. This paper was published in the preview edition of the new Mary Ann Liebert journal, "PHAGE".

  807. Phage Directory, expanded

    Dear phage fans,

    You may have noticed some improvements and differences around the site, and we have some exciting news to share! We've heard lots of feedback over the past year, and we've made some additions and improvements based on what we've heard from the phage community. Plus, we've received funding to move forward with this work!

    Read more about our expanded mission and how we got here. Please let us know how we're doing and send us questions and suggestions!

    — Jan & Jessica

    More focus on phage research and development

    Expanded access to phage therapy starts with phage research, clinical trials, data collection, publication, and the collective hard work of the entire phage community.

    Phage Directory is expanding its platform to support the community of phage researchers and phage developers in a few ways:

    Profiles for phage researchers, labs and organizations

    Phage Directory is growing beyond tracking labs for phage therapy. We want to help you find collaborators in the phage community, follow what others are working on, and get noticed for your specific expertise.

    The directory welcomed people working with phages across roles, and organizations such as startups, phage banks, nonprofits and CROs. The open signup forms from this announcement are retired; profile editing is currently by invitation.

    Capsid & Tail is now easier to read and cite

    Each article is now easier to read and to cite, and our guest writers can easily get credit for their work. All changes apply to past issues too!

    Easily post a job, event, or a message to the Community

    Let the phage community know if you have any thoughts or requests, upcoming workshops and conferences, or if you're hiring.

    To support our growing phage biotech community, all job posts are now free.

    Support from Mozilla!

    Mozilla logo Leona M. and Harry B. Helmsley Charitable Trust

    We’re thrilled to announce that we’ve been awarded a Mozilla Open Science Mini-Grant! We’re extremely grateful to Mozilla and to the Leona M. and Harry B. Helmsley Charitable Trust for getting behind our vision and supporting us as we build the infrastructure to accelerate progress in the phage field through increased openness and collaboration.

    With this grant, Phage Directory is funded to begin developing an open source and open access phage tracking and phage data publication platform.

    Let's bring phage data and insights online

    Our goal is to bring the world’s known phages and associated metadata online, and to make the data open and discoverable. This means ALL phages—not just those useful for therapy.

    1. Contribute to an open phage database

    Get noticed for what you do, help potential collaborators find you, and help your global peers by listing your lab's phages along with their associated characteristics, papers and patents.

    If you’d like to bring your lab’s phage data online, please email us at phages@phage.directory and we’ll be in touch soon.

    If you’re concerned about sharing information about your phages, we’d love to hear your perspective too. What kinds of phage data should be public, and what should be private? Is there anything we can do to make you feel more comfortable listing your phages and sharing your insights? Let us know by emailing phages@phage.directory.

    2. Get your phage insights published

    Publish open access, peer-reviewed phage genome reports and phage characterization reports. We are now open for submissions!

    If you're interested in publishing with us, please email us at reports@phage.directory and we’ll send you the author guidelines.

  808. Before now, no virus has been reported to infect ammonia-oxidizing archaea (AOA) from the phylum Thaumarchaeota (ubiquitous marine archaea). However, a new paper by Jong-Geol Kim (Chungbuk National Univ.) and colleagues describes the isolation and characterization of three Nitrosopumilus spindle-shaped viruses that infect AOA. Curiously, viral replication inhibits AOA growth and reduces ammonia oxidation and nitrite reduction, but does not degrade the host chromosome or decrease cell counts.

  809. Community Q&A: Database of phage genomes for mapping / favorite mapping pipeline?

    Here’s a great example of the phage community helping each other out on Twitter — thanks to Stephen Stockdale of APC Microbiome (@SteveStockyPhD) and Simon Roux of the Joint Genome Institute (@simroux_virus) for providing answers!

    Here’s the question:

    Does anyone know of a database of (putative) phage genomes that you can map reads against? Or your favorite pipeline for mapping reads to a set of references/contigs? Bonus points if it's easy to use for people who don't like coding (that's me)! — @ElysianTweets

    The answers (so far):

    If you are not comfortable downloading viral RefSeq, there is the complete reference viral database (RVDB) — @SteveStockyPhD

    Or Andrew Millard's group @milja001 have an easy to download database — @SteveStockyPhD

    Or if you would like easy to download crAss-like phage sequences — @SteveStockyPhD

    If you have access to a server that will run alignments and process output (using Bowtie2 and Samtools), but are not comfortable with coding, I can send you some commands. — @SteveStockyPhD

    And for mapping reads to genomes without the need to code, we have iVirus on @CyVerseOrg, with full protocols courtesy of Ben Bolduc from @Lab_Sullivan. — @simroux_virus

    If you get help from someone in the phage community, or you see an example like this, send it to community@phage.directory — we’d love to feature it here!

  810. BiomX, a biotech company developing natural and engineered phages to treat microbiome diseases, announced a merger agreement with Chardan Healthcare Acquisition Corp. The combined company is expected to be listed on the New York Stock Exchange under the name BiomX, and will proceed with developing BiomX’s phage products. This is a big deal for phage biotech as a field, as it means more public visibility and more funding, and importantly, it’s a signal that investors are gaining confidence in phage-based technologies.

  811. Where did our gut virome originate? A team of 117 authors (from 75 labs & 60 countries), led by Rob Edwards (SDSU) and Bas Dutilh (Utrecht University), has published an impressive new crAssphage study in Nature Microbiology showing how globally widespread crAssphage is among humans, how it’s even found in primates, and how it seems to be benign, as its presence doesn’t correlate with health or disease. There’s much more to this study, so have a read! Or take a look at the extensive media coverage it's gotten so far.

  812. Harald Brüssow, guest editor of the recently completed "Hurdles for Phage Therapy to Become a Reality" issue of Viruses, has written an editorial on the work (30 papers) published in the issue. His take-home lessons for optimizing phage therapy clinical trials: (1) Establish the disease-causing role of the pathogen in the target population (don't rely on textbook knowledge). (2) Avoid polymicrobial infections. (3) Make sure the pathogen concentration in the patient is high enough to support phage infection. (4) Make sure available phages cover the genetic diversity of the pathogen. The editorial is filled with many more insights, and is worth a read!

  813. PHAGES in Grenoble will take place on October 8-9, 2019 at the Institute for Structural Biology, on the EPN (European Photon & Neutron Campus) campus in Grenoble. This is the fifth phage symposium organized by PHAGES.fr. Its objective is to bring together the community of French phage research teams, while being open to international teams. It's free to register, but you must register in advance.

  814. Submissions are now open to a new Bacteriophage Collection within the journal Microbial Genomics (a Microbiology Society journal). Here’s their tweet: #Bacteriophages are a key tool in biological research, and this new collection will bring together research focussed on the role of phages in #evolution of bacteria and #ecosystems, and large-scale genomic analyses that can inform new phage therapies. This collection will be guest-edited by Prof. Testuya Hayashi (Kyushu University, Japan).

  815. Call for Posters for Phage Futures Europe, Brussels, September 25-26

    Looking to showcase your recent work to the phage therapy community? Phage Futures Europe is accepting abstract submissions for poster presentations. Your poster will be displayed in a dedicated poster area. The poster session will take place at the afternoon networking break along with an evening session to present and talk about your poster. Abstract submission deadline is July 17th, 2019, so submit your abstract soon! See you there! (And don’t forget to use code PD10 for 10% off conference registration!)

  816. Seeking phage research opportunity

    Mahsa Yazdi Gorgan, Iran — Golestan University of Medical Sciences

    I recently graduated with a Ph.D. in Microbiology from the University of Isfahan, Iran. My thesis was entitled “Isolation and characterization of lytic bacteriophages against some of the most common bacterial causes of urinary tract infections” under the supervision of Prof. Majid Bouzari. During my Ph.D. project, I learned almost all the necessary techniques and methods for phage study and gained useful experience in phages and phage therapy. I currently work as an independent researcher at the Department of Microbiology, Golestan University of Medical Sciences, Gorgan, Iran. I am looking for a postdoc or research scientist position to pursue my interest in phages and related topics. Please email me at mahsayazdi92@gmail.com if you have any openings or would like to discuss further!

  817. PhD student seeking a phage lab for a funded 1-month internship

    Ibtihadj Souda Constantine, Algeria — University of Constantine 1

    I am Ibtihadj Souda, a PhD student at the University of Constantine 1 in Algeria working on isolation and characterization of new bacteriophages from wastewater in the Sahara Desert of Algeria (North Africa). Recently, I have been offered a fully funded scholarship from our university (to cover travel and accommodation), so I have an opportunity to spend a one-month internship at a laboratory to do molecular characterisation of the phages we have isolated. I would like to observe my phages by transmission electron microscopy and perform genome sequencing. The location of the lab can be anywhere, and the timing of the visit can be anytime from June-Dec 2019, but I need to submit an invitation letter by June 30, so I need to find a host lab as soon as possible. Please email me at ibtihege.souda@umc.edu.dz and we can discuss details! Thank you!

  818. Phage meetups and talks at ASM Microbe this weekend!

    San Francisco, California — American Society for Microbiology

    Phage Meetups

    • Friday, June 21, 5-6:30 PM: Division M phage meeting and award ceremony (Division M is the bacteriophage division of ASM); there will be food, drink and phage; room 306/307/308 South
    • Sunday, June 23, 5:30 PM: Adair Borges and others in the Bondy-Denomy lab are organizing an informal gathering for phage enthusiasts at a brewery near the conference venue (location TBA)! RSVP by commenting on Adair's tweet.

    Phage Talks

    For more, check out (and add to) this Twitter thread!

    • Carski Award Lecture: Dr. Louise Temple (Saturday, 3:30 PM, S206, room 2018 West)
    • Dr. Paul Turner (Friday, 8:30 AM)
    • Dr. Graham Hatfull on SEA-PHAGES (Saturday, noon, S167)
    • Bacteriophage defense in the era of CRISPR (Sunday, 8:00 AM, S287)

    Seeking a guest blogger!

    If you're attending ASM Microbe, we're looking for a phage researcher to write a guest post for Capsid & Tail about insights/impressions from the conference! Email capsid@phage.directory if you're interested, and we'll send you more info! Looking for a draft to be written by mid-July.

  819. Help us build a publication platform for the phage community!

    As you may know, we're launching a peer-reviewed publication platform for the phage community. We want to improve the publishing experience for authors and reviewers, and we'd love to hear from you!

    Email your answers to reports@phage.directory, or fill out this form: https://forms.gle/U2qEdfiwSa5J47af8 (and please share the link with your colleagues!).

    1. What annoyed you about the last paper you submitted for publication?
    2. Where are you publishing your next paper? Why?
    3. What is one thing you would change about scientific publishing?
    4. Are you waiting to publish any insights or data? Why?
    5. Why did you accept your last peer review request?
    6. Do you think you review more or less than your peers?
  820. Vorrapon Chaikeeratisak and colleagues at UC San Diego, the group that discovered that certain Pseudomonas phages replicate their DNA inside a phage-encoded nucleus-like structure, have now published that the capsids of these phages traffic along phage-encoded, "treadmilling" tubulin filaments. The "nucleus" rotates as a result of this treadmilling action, which distributes capsids for efficient DNA packaging. Paper | News article | Youtube video | Apply for a job in this lab!

  821. Md. Shamim Ahasan and colleagues at James Cook University in Queensland, Australia have published a study comparing phage therapy to antibiotics in treating gut dysbiosis in endangered green turtles. They found that phages (isolated from sewage on turtle gut strains) reduced the targeted Acinetobacter, but did not otherwise significantly alter the microbiota. Antibiotics also reduced Acinetobacter load, but also led to microbiome disruption. Paper | Press release

  822. Dear phage community,

    We recognize the importance of supporting fundamental phage research, because effective phage therapy starts from a basic understanding of phages.

    We're excited to announce that we're working on publishing affordable, open access, peer-reviewed Phage Characterization Reports and Phage Genome Reports.

    We would like your help!

    You're the phage experts, and we'd love to get your thoughts and feedback on what currently works well, and what doesn't. If you're interested in joining our small but growing list of very early adopters, and submitting your work with or helping us develop this new avenue, please let us know!

    If you're interested in helping or are just as excited as we are, please get in touch through email (reports@phage.directory). The chat-booking link from this announcement is retired.

    Jan & Jessica

  823. A new paper by Mohammad Tariq and colleagues at the University of Northumbria describes induction of temperate P. aeruginosa phages isolated from patients with cystic fibrosis or bronchiectasis. The more advanced the disease, the broader host range the phages had, and phage infection led to altered antimicrobial susceptibility in P. aeruginosa.

  824. BiomX, a phage therapy biotech company, just announced that it's licensed new bacterial targets for commercialization of phage therapies for Primary Sclerosing Cholangitis (PSC; a rare, progressive liver disease). The targets: strains of Klebsiella pneumoniae, discovered by Dr. Takanori Kanai and colleagues at Keio University School of Medicine. The presence of these strains disrupts the gut epithelium and leads to liver inflammatory responses. BiomX has phages that target these strains, and is developing a cocktail to treat PSC.

  825. The now-constant flood of phage sequence data is showing that tailed phages are more genetically diverse than previously thought. This has led to a re-classification of tailed phages, which is described in a new paper by Jakub Barylski and colleagues. The Spounavirinae subfamily of the Myoviridae family has now been re-classified as its own family, the Herelleviridae, a new taxon of the same rank.

  826. The journal Viruses has announced that it is now accepting nominations and applications for two travel awards. Awards (800 Swiss Francs each) can be applied to a virology conference in 2020, and can be awarded to PhD students or postdocs.

  827. A new paper by Alexander Meeske and colleagues at Rockefeller University shows that CRISPR-Cas13, poorly understood compared to other CRISPR-Cas systems, leads to host cell growth inhibition (through degradation of both phage and host RNA) in the presence of phage. This way, the cell can defend against phages without selecting for CRISPR-resistant mutant phages. See also this commentary on the paper by Simon Jackson and Peter Fineran.

  828. A new paper by Bryan Hsu and colleagues at Harvard and Brigham and Women's Hospital showed (in the mouse gut) that introducing phages led to predictable shifts in the targeted population, but also had "cascading effects" on non-phage-susceptible bacteria. Also, phage-induced shifts led to changes in the metabolome, including changing neurotransmitter levels, etc.

  829. Virome datasets are being generated at unprecedented rates, but new data are rarely cross-compared, which leads to virus novelty being inflated in new datasets and many viral sequences going undetected. A new preprint by Ann Gregory and colleagues at Ohio State University discusses a new human gut virome database they built to aggregate findings into a central database.

  830. Rick Bright, Director of BARDA, shared his opinion on how the recent bankruptcy of Achaogen (a BARDA-funded biotech that recently brought an antibiotic to market, then saw such poor sales that it closed its doors) proves that the marketing paradigm for new antimicrobials needs to be completely reevaluated. He says BARDA "cannot continue to provide non-dilutive investment, only to have companies collapse and their newly minted antibiotics shelved or lost completely." He's optimistic that new business models and collaboration through public-private partnerships (like CARB-X) could help.

  831. Register now for the 2019 Evergreen Phage Bioinformatics Workshop

    Betty Kutter & Evergreen Organizers Olympia, WA — Evergreen International Phage Meeting

    The 2019 Evergreen Phage Bioinformatics Workshop will consist of three tracks: Genomics with Galaxy & WebApollo; Genomic annotation with PATRIC; and Viromics (metaviromics). Participants are invited to register for one of these tracks on Saturday (4 PM – 9PM, 4h of work, with a break for supper), and/or for one of these as repeated on Sunday (8:30 to- 12:00, 3 ½ h). Each track will consist of an introductory lecture followed by hands-on sessions where participants can work on example datasets.

    Observers are also welcome in each of the 3 sessions. (Note: Participants need to work on their own laptops; no computers will be provided.

    We will plan on having a van pool for people arriving Saturday morning. For people taking part in the Saturday workshop, there will be an extra $10 fee from Evergreen for using their facilities.

    The 3 tracks are:

    1. Genomics – Annotation: with PATRIC (Ramy Aziz & PATRIC people): Phage annotation using RAST and PATRIC. This track is suitable for beginners.

    2. Genomics - Phage genomics: with Galaxy and WebApollo (Jason Gill): This track will cover the start-to-finish process of whole-phage genomics, including DNA sequencing, assembly, end determination, annotation, and comparative genomics using the user-friendly interfaces Galaxy and WebApollo. This is suitable for both beginner and intermediate users. There will be a limited number of participants for people doing their own genomes, but the 2 hour lecture is open to all, the hand-on portion can handle about 15 people working on their own genomes.

    3. Viromics -- (Alejandro Reyes & Evelien Adriaenssens): introduction to sequence pre-processing, clean-up, and assembly using command-line tools; visualization of data. Suitable for users who know how to navigate a command-line environment.

    Register here for the Genome Workshops!

    And if you haven't yet registered for the Evergreen phage conference itself (Aug 4-9), register here!

  832. Seeking soil samples for phage isolation

    College Station, Texas — Center for Phage Technology

    Howdy phage enthusiasts! The Center for Phage Technology is currently seeking out new environmental soil and water samples for phage isolation! Direct message the CPT on Twitter if there's something you'd like to send! We'll cover shipping and can even send you a kit to get started! #phage #science #savingtheworld #CitizenScience

  833. This NPR article discusses Locus Biosciences' upcoming E. coli urinary tract infection phage therapy trial and interviews one of the trial volunteers—Alfonso Evans, a US Army veteran who was paralyzed by a spinal cord injury and thus suffers frequent UTIs—and a physician involved in the trial, Dr. Michael Priebe of the Norwood VA Medical Center in Augusta, Georgia, USA. Starting later this year, volunteers will receive a cocktail of Locus' CRISPR-engineered phages to test their safety.

  834. Diane Shader Smith is the mother of Mallory Smith, the 25-year-old who passed away in 2017 from an antibiotic resistant lung infection. Diane has given a TEDx talk (14 min) about Mallory's life, legacy and memoir: Salt in My Soul. Diane describes their family's efforts to promote and raise funds (so far $5 million+ for research, plus all Salt in My Soul profits to be donated) for cystic fibrosis and phage therapy, so they can save other lives.

  835. Two new phage bioinformatics tools for you this week: first, a phage host finding tool: link phages and potential hosts by finding shared attachment sites for prophage integration (GitHub), and second, Prophage Hunter: an integrative hunting tool for active prophages (Paper | Tool).

  836. A new patent on phage compositions and uses was published this month by Paul Turner, Benjamin Chan and John Wertz. Their invention includes phage compositions and methods to increase antibiotic sensitivity in bacteria, a pharmaceutical composition comprising a lytic phage, a method of treating multi-drug resistant bacteria, and a method of disrupting biofilms.

  837. IBRC Community Update: New web design, a documentary, and new members welcome!

    International Bacteriophage Research Consortium

    The IBRC portal is inspired by the global antibiotic resistance situation & the promising potential phages offer as credible antimicrobial therapeutics.

    Launched in October 2018, IBRC is a joint effort by Acharya Narendra Dev College (ANDC), University of Delhi, India and Open Health Systems Laboratory (OHSL), USA to build a consortium of scientists working on phages and lysins.

    If you're a phage scientist/scholar, a medical or industry professional, or a phage therapy supporter interested in joining the consortium, contact Dr. Urmi Bajpai at urmibajpai@andc.du.ac.in or at ibrc.pt2018@gmail.com, or tweet @phageconsortium.

    To help promote AMR awareness, and prior to launching the IBRC, Dr. Bajpai created a short docu-drama film on AMR and phage therapy (10 min), which will be soon dubbed in other languages too. In it, you'll hear from Pranav Johri of Vitalis Phage Therapy and Mzia Kutateladze, the director of Eliava Institute.

  838. A 13-month old infant was successfully treated with phage therapy (English article | Dutch article) post-liver transplant at the Saint-Luc University Hospital in Brussels. Phages were obtained from the Queen Astrid Military Hospital—read more about how the Queen Astrid now processes and responds to patient requests for phage therapy for patients like this one in their recent paper by Sarah Djebara and colleagues.

  839. A new phage pharmacokinetics paper by Katarzyna Hodyra-Stefaniak and colleagues in Krystyna Dabrowska's group at the Polish Academy of Sciences has demonstrated a "short-circulating phage" phenotype that has implications for engineered phage therapy. Contrary to expectations, T4 phages engineered to display tissue-homing peptides (including lung, prostate, and brain-targeting peptides) were cleared more rapidly from mice (likely via complement) compared to unmodified T4.

  840. Seeking temperature-inducible P22 prophage

    Glasgow, UK — José R Penadés

    Phage community, I need your help! I'm desperate looking for a P22 prophage that is inducible by temperature (P22 ts c2 29). It was published more than 50 years ago. If you know somebody that could have it, please, contact me at JoseR.Penades@glasgow.ac.uk! If not, please pass it on! It is really important! Thanks!

    (Check out his twitter thread (@jrpenades) to see responses so far, or to add yours!)

  841. How do we translate phage-based applications into clinically- and commercially-viable therapeutics? Join us Sept. 25-26, 2019 in Brussels, Belgium at Kisaco Research's Phage Futures Europe conference! The new agenda is now up, registration is open, and early bird pricing lasts until June 15. Use discount code PD10 for an extra 10% off!

  842. The Eliava Institute is hosting its second Bacteriophage Research and Methodology summer school training course from July 22-Aug 2, 2019, in Tbilisi, Georgia. The course is for master's students, PhD students and young scientists, and covers genome annotation and basic phage methodology. Register by June 30!

  843. Ho Bin Jang, Benjamin Bolduc and colleagues from the Sullivan lab at Ohio State University, along with several collaborators from the US, UK, Canada, France, and Belgium, have published a paper this week in Nature Biotechnology describing a new tool, vConTACT v.2.0, that can provide reliable taxonomic assignments for uncultivated viral genomes. Paper | Bitbucket.

  844. The business combination transaction between AmpliPhi and C3J, two phage therapy biotech companies, is expected to close today. The new name of the combined company will be Armata Pharmaceuticals, Inc., and shares will be expected to start trading on the New York Stock Exchange under the symbol “ARMP” tomorrow.

  845. A new preprint by Dr. Aleksandra Petrovic Fabijan and colleagues at the Westmead Institute for Medical Research in Sydney, Australia and AmpliPhi Biosciences provides much-awaited data from their IV phage therapy treatment of 13 patients with severe Staphylococcus aureus infections. They saw no adverse effects, bacterial burden and inflammation was reduced, and no phage-resistant S. aureus were isolated. Please comment on / discuss their preprint here!

  846. Phage genomes can be hard to annotate, especially with tools that aren't designed with phages in mind. Fortunately, Katelyn McNair and colleagues in Rob Edwards' lab have published a paper describing their new phage gene caller, PHANOTATE. They annotated >2000 phage genomes alongside the three other most popular gene callers, and found that all four agreed on 82% predicted genes, but PHANOTATE predicted more genes than the other three. Paper | Github

  847. Phigaro is a scalable command-line tool by Elizaveta Starikova and colleagues for phage and prophage prediction from nucleid acid sequences (including metagenomes). It can also produce annotated prophage genome maps and distinguish tailed from non-tailed phages! Preprint | Github.

  848. A new paper (published today!) by Ann Gregory and colleagues shows identification of almost 200,000 new viral populations in the ocean (this work comes in part from the Tara Oceans expedition). The work identifies interesting new biodiversity hotspots in the ocean (including in the Arctic!) and virome diversity patterns that don't always follow diversity patterns of larger organisms.

  849. Sooyeon Song and colleagues have published a new paper showing that E. coli employs both active (lytic and temperate) and inactive phages (a cryptic prophage) to discriminate between nearby strains and control cell-cell contact according to whether a nearby strain is kin or non-kin. Journal article | News article

  850. Welcome, new volunteers!

    Phage Directory

    We have our first Phage Directory volunteer! Cathy Nguyen will be helping with Capsid & Tail's What's New and Jobs section. We also welcome our first guest writer this week, Lucy Furfaro!

    If you'd like to help (or be kept up to date on other volunteer opportunities), email volunteer@phage.directory. If you'd like to contribute a guest article, email capsid@phage.directory for details.

  851. Johanna Sweere and colleagues just published a very exciting paper today in Science! A temperate filamentous phage of Pseudomonas aeruginosa dampens the immune response against P. aeruginosa, which leads to increased P. aeruginosa virulence. (More phage = increased wound severity!) The authors also show that vaccination against this phage works to protect mice against P. aeruginosa. STAT News article | Paper

  852. Announcing a new series of hands-on phage (meta)genomics workshops at this year's Evergreen International Phage Meeting! Workshops will take place Sat, Aug 3, 4-6 pm and 7-9 pm, and Sun, Aug 4, 9-11 am. An open phage genomics and metagenomics discussion will follow (Sun Aug 4, 11:15 am - 1:30 pm). Workshops will be taught by a group of leaders in the field, including Ramy Aziz, Evelien Adrianssens, Alejandro Reyes and Jason Gill.

    Workshops are free with conference registration; extra charge only for Saturday night dorm accomodation if needed. If interested, email tescphage@gmail.com and specify whether interested in metagenomics issues and/or phage annotation challenges. Spots are limited. It is possible to sign up for Sunday only. More details to come!

  853. Seeking collaborators and guidance for phage research

    Raniero Lorenzetti Rome, Italy — IZSLT

    Our group is looking to begin isolating and characterizing phages, first against fish pathogens, mainly at the molecular level. In the future, we will seek to exploit phages to control many animal pathogens. We are seeking help and support from phage experts during the learning curve process. I would also be very grateful if a phage lab could host me as a visiting scientist for a few days, to help me get acquainted with the process of phage manipulation. Please contact me at raniero.lorenzetti@izslt.it to talk about this further.

  854. Seeking environmental samples for phage hunts!

    Steffanie Strathdee San Diego, CA — IPATH

    Want to help #phagetherapy patients? Our collaboration between @IPATH & @TAMU_CPT needs environmental samples for #phagehunts! You can help by sending soil samples to @TAMU_CPT. Message Steffanie Strathdee (@chngin_the_wrld) on Twitter for details and may the #phage be with you! #AMR #superbugs #AntibioticResistance

  855. Check out this exciting new preprint from the Banfield lab and colleagues. They sequenced DNA from diverse ecosystems and found HUNDREDS of huge phage genomes (up to 716 kbp). The phages they found encode lots of new things phages don't typically have, such as new CRISPR-Cas systems, translation factors and ribosomal proteins!

  856. Listen to Dr. Minmin Yen, co-founder & CEO of the new biotech startup PhagePro, discuss her company's goals of preventing cholera with phages on the podcast "Important, Not Important". An especially great listen for grad students & postdocs wondering about the transition from the bench to founding a biotech company! (61 min)

  857. Seeking postdoctoral opportunity in medical microbiology / phage therapy

    Prasanth Manohar — Vellore Institute of Technology

    I have completed my Ph.D. at Vellore Institute of Technology, Vellore, India. My research project deals with the characterization of bacteriophages infecting E. coli, K. pneumoniae and Enterobacter species. I have expertise in working with carbapenem-resistant clinical bacteria and studying the antibacterial activity of phages in vivo. In the future, I am looking forward to do my post-doctoral research in the field of Medical Microbiology, especially phage therapy. Please email me at prasanth.emsa1@gmail.com if you know of opportunities!

  858. Salt in My Soul: An Unfinished Life is the memoir of Mallory Smith, whose story inspired us to create Phage Directory. It comes out next week (Mar 12). Mallory was set to receive phage therapy in November 2017 after a Burkholderia cepacia infection took over her lungs, but she passed away too quickly. However, she kept journals from age 15 to 25, when she died, which she intended to be published as a memoir. Preorder here and read this touching LA Times article about the book while you wait.

  859. If you know anyone who hasn't heard Tom and Steffanie's story yet, here's an in-depth podcast interview with them on the Super Awesome Science Show that you can share. It also goes into phage use in the livestock industry in an interview with Dr. Lawrence Goodridge. (36 minutes)

  860. Marco Cafora and colleagues have developed a zebrafish model of cystic fibrosis and used it to show that phage therapy can treat Pseudomonas aeruginosa (and modulate immune response in the fish). This is the first time that phage therapy has been successfully applied to an in vivo CF model system. Here's the paper.

  861. A new NIH funding announcement involving phages: exploratory/developmental research into microbial-based cancer therapy ("Bugs as Drugs"). Excerpt: "Utilizing bacteria, archaebacteria, bacteriophages and other non-virus microorganisms, this initiative will support research projects designed to study the underlying mechanisms of the complex interactions between microorganisms, tumor, and immune system." Open date: May 5, 2019.

  862. The University of Pittsburgh has established the Roger W. Hendrix Fund to honor a giant in the phage field who was lost too soon. Please consider contributing to this endowed fund to support and encourage future generations of scientists and advance science. Contact Tom Golightly at twg3@pitt.edu if you have questions.

  863. Seeking feedback on a new phage susceptibility testing platform

    Michael Van Delle — Adventus Research + Consulting

    University of Toronto researchers have developed a novel phage susceptibility testing platform. To understand the need for such a solution, Adventus Research + Consulting is reaching out to phage community experts, stakeholders and researchers for feedback. Honoraria are offered in exchange for your feedback (either via phone or survey). Email Michael Van Belle at mvb@adventusresearch.com to participate!

  864. Cell Host & Microbe just released a special issue devoted to phages!. This includes four free featured reviews, one of which is this article by Kaitlyn Kortright, Benjamin Chan, Jonathan Koff and Paul Turner of Yale University, where they describe the use of phages to select against virulence and antibiotic resistance. Excitingly, they also take us through five clinical case studies and the three most advanced phage clinical trials done to date.

  865. Review: Phage Therapy, a renewed approach to combat antibiotic-resistant bacteria (Cell Host & Microbe)

    Review in Cell Host & Microbe by Kortright, Chan, Koff and Turner (Yale) on the history of phage therapy and why it is regaining interest as multidrug-resistant infections rise. It compares phage therapy with chemical antibiotics and their potential synergies, examines animal models, case studies and clinical trial results, and discusses how to evaluate phage therapy against antibiotic-resistant bacteria.

  866. Seeking tips on how to isolate P. larvae phages

    Heather Hendrickson Auckland, New Zealand — Massey University

    Phage Friends! We need help! We have processed over 300 soil samples looking for phages on Paenibacillus larvae... (the bee pathogen) here in NZ. Have you ever looked SO HARD for a phage and not found one? Suggestions? Ideas? Sympathy? PLEASE? (Bonus: check out all the tips the phage community has already shared via Twitter!)

  867. Seeking collaborators and guidance for new phage therapy center

    Gunaraj Dhungana Kathmandu, Nepal — Tribhuvan University

    My name is Gunaraj Dhungana, I'm a Ph.D scholar from the central Department of Biotechnology, Tribhuvan University, Nepal. We have been working on the characterization and preparation of a phage bank to establish a phage therapy centre in Nepal. We are seeking collaborations and guidance to establish the centre. Please email me at grdhungana79@gmail.com if you are willing to offer advice or would like to talk about collaborating.

  868. Bacteria sometimes acquire "incorrect" CRISPR spacers in response to phage infection. Until now, no one knew whether these incorrect ("slipped") spacers had a purpose. Simon A. Jackson, Peter Fineran and co. have just shown that slipped spacers can actually be beneficial to bacteria. Here's the full paper and a ScienceDaily article about it.

  869. Mark your calendars for another exciting translational phage conference! The Bacteriophage Therapy Summit will take place in Boston, Massachusetts March 26-27, 2019. The meeting will focus on the discovery, translation and acceleration of phage research into targeted therapeutics. Register here and use code 12259PHD for 10% off.

    Bacteriophage Summit 2019

  870. PhagoMed, a Vienna-based phage therapy company, was just awarded a Phoenix Award. The award honours young and successful companies that serve as role models for high-class research and entrepreneurship in Austria. Congratulations!

  871. Case report: phage therapy in a 16-year-old boy with Netherton syndrome (Eliava Phage Therapy Center)

    Case report from the Eliava Phage Therapy Center in Tbilisi of a 16-year-old with Netherton syndrome, atopic diathesis and serious staphylococcal infections, with allergy to multiple antibiotics. Treatment with several antistaphylococcal phage preparations led to significant improvement within 7 days and very substantial changes in symptoms and quality of life after 6 months, including phage use at home.

  872. India ANRF Prime Minister Early Career Research Grant

    The programme supports researchers beginning their careers at a new institution with up to ₹60 lakh plus overheads for three years. Support can cover staff, project-related travel, open-access publication and patent costs. The programme page includes a call-specific joining-date relaxation; the complete eligibility rules and current application window need the linked guidelines.

  873. MIDAS African Faculty AI in Science Fellowship: October 5 first-stage deadline

    The final application cycle supports African faculty researchers for two years, including one year in Ann Arbor from summer 2027. Support includes a $35,000 residence stipend, housing, travel and a $50,000 pilot grant on return to Africa. Basic biological research is eligible; projects focused on disease diagnosis, prevention or treatment are excluded. Phase 1 closes October 5, 2026, at 23:59 EDT; selected applicants complete Phase 2 by November 23.

  874. Ersilia AI Incubator: October 19 application deadline

    Ersilia and H3D’s six-month AI Incubator supports African-led small-molecule drug-discovery projects for infectious diseases. Selected projects receive US$10,000, mentoring and funded in-person participation. Applications close on October 19, 2026 for the February–July 2027 programme. The remit is small molecules, rather than a dedicated phage-therapy track.

  875. JST–BRIN bioproduction collaboration: 2025 call archive

    JST and BRIN’s 2025 Japan–Indonesia joint call supported up to three years of collaborative bioproduction research. Japanese-side support included ¥24 million in direct expenses plus 30% indirect expenses; Indonesian-side support was up to Rp1 billion per project per year. Applications closed on May 15, 2025 at 2pm JST / noon Indonesia time.

  876. TWAS GTCR-MENA research grants: 2026 call closed

    The programme supports research capacity and German-laboratory collaborations in selected Middle Eastern and North African countries, including biotechnology, AI and health research. PhD investigators need an eligible-country appointment and German collaboration letter; age and concurrent-grant restrictions apply. The extended deadline was June 18, 2026, at 23:59 CEST.

  877. Pharokka: a fast, scalable bacteriophage genome annotation tool

    Pharokka is a Python tool, installable through bioconda, that annotates bacteriophage genomes easily, rapidly and consistently with standards-compliant outputs, taking under 5 minutes for an average 50-kb phage genome. Its authors built it because existing tools are either not phage-specific or are web- and email-based and need significant manual curation; the source code is on GitHub.

  878. BioFAIR Pathfinder Projects: closed first round, further round planned

    Pathfinder Projects support practical solutions for FAIR and AI-ready life-science data and workflows. The first round offered up to £100,000 for twelve months to UK research organizations eligible for UKRI funding. It closed December 15, 2025; the page anticipates another round later in 2026 without announcing a new application window.

  879. Best Arabic Phage Award: apply by October 20

    Phage Arab’s BAPA 2026 award recognises Arab researchers working on distinctive phages from the Middle East and North Africa. Its announcement invites researchers with a newly isolated phage registered in NCBI GenBank to apply by October 20, 2026. JAFRAL Biosolutions and MediPHAGE sponsor the award.

  880. DBT–BIRAC Bio-AI hubs: May 2025 call archive

    DBT and BIRAC invited interdisciplinary teams to propose Bio-AI research hubs under the BioE3 policy. The 2025 call sought biotechnology problems with substantive research outcomes and offered up to ₹25 crore over two years, according to merit and requirements. Concept-note submissions closed on May 10, 2025.

  881. ERC Starting Grant PEPHI: permanent phage infections (Helmholtz-Zentrum für Infektionsforschung)

    PEPHI (Permanent Phage Infections), an ERC Starting Grant project coordinated by Helmholtz-Zentrum für Infektionsforschung in Germany, runs from 1 March 2027 to 29 February 2032 with an EU contribution of €1,499,982. It tests whether nucleus-forming phages can replicate in step with their host without lysis, a permanent replication cycle that may help explain why chronic infections resist clearance, and aims to engineer phages that bypass it.

  882. AMED HealthTech Challenge: 2025 closed call

    AMED’s HealthTech Challenge supported early-stage infectious-disease technology projects at Japanese institutions, including startup or entrepreneurship-oriented academic work. The 2025 call closed at noon on September 11. Support was staged, with continuation into later years subject to selection.

  883. Pipeline Accelerator infrastructure vouchers: October 30 deadline

    The 2026–27 first round subsidizes access to Australian translational research facilities, with support up to A$50,000 and at least 50% applicant matching funding. Supplementary Bioplatforms Australia or Microscopy Australia vouchers require a Phenomics Australia, TIA or NDF voucher application in the same round. Applications close October 30, 2026, at 17:00 AEST.

  884. EMBL ARISE2: 2026 fellowship archive

    EMBL’s ARISE2 programme offered three-year fellowships for researchers developing technologies and methods for life-science research infrastructures. Fellows receive a site-based salary, social benefits and training across research and infrastructure services. The 2026 application round closed on September 30.

  885. Indonesia–Malaysia Grand Challenge: 2025 archive

    BRIN and MIGHT supported bilateral research in natural-product medicine, agricultural genetic resources and mechanisation, and vaccine processes and technology. Each country’s consortium needed a research partner and company or SME. Applications closed on January 31, 2025.

  886. NAIRR Pilot: available AI research, startup and education resources

    NAIRR connects U.S. researchers and educators with computational, data and training resources for AI research and research using AI. Current routes include research allocations, startup-project resources, education resources and deeper partner collaborations. The portal states that existing opportunities remain available during the Operations Center transition; each route has its own application terms.

  887. NSF graduate fellowships: October 19 life-science deadline

    NSF GRFP offers three years of support over five years for eligible research-based graduate study: a US$37,000 annual stipend and US$16,000 annual institutional education allowance in supported years. The life-sciences deadline is October 19, 2026 at 8pm Eastern. Basic biological research may qualify; directly human disease, therapy and drug-development projects are excluded, subject to the solicitation’s limited exceptions.

  888. Claude team plan for scientists: free and discounted lab subscriptions

    Verified academic and nonprofit research groups can access twelve months of promotional Claude Team pricing: standard seats at US$0/month or premium seats at US$15/month with five times the usage. Groups can have 1–25 seats, with larger groups handled separately. A PI or equivalent verifies the lab and adds its researchers; final pricing is confirmed at verification.

  889. Japan SPReAD AI for Science support: 2026 second round closed

    SPReAD supports exploratory AI-for-science projects across disciplines, including life sciences, with up to ¥5 million in direct costs per project and AI adoption support. Researchers and students must be affiliated with eligible institutions in Japan. The second 2026 call closed July 3 at noon; selected projects run through February 19, 2027.

  890. SAAFE AMR PhD Scholars: scholarships and professional development

    SAAFE PhD scholars join research partners working on antimicrobial-resistance monitoring, analytics and solutions. Support includes a A$45,000 annual scholarship for 3.5 years FTE and a A$21,000 professional-development fund. Candidates can apply for an approved PhD project or propose a new project; individual project eligibility follows the linked application routes.

  891. TÜBİTAK biotechnology: national-stage deadline November 18

    TÜBİTAK’s Turkish national stage for Eureka biotechnology projects closes on November 18, 2026 at 11:59pm Turkey time, with first-time organisation pre-registration due November 17. This stage is for Turkish partners whose international application has passed preliminary review; the international call closed September 25. Turkish-partner project budgets are capped at €500,000, with support rates depending on organisation type.

  892. ANRF National Postdoctoral Fellowship: programme and eligibility

    ANRF’s National Postdoctoral Fellowship supports two years of mentored research in science and engineering in India. The programme lists ₹80,000 per month plus applicable HRA for qualified fellows, or ₹50,000 before the degree is awarded, and ₹200,000 per year in research support. Individual call windows are announced separately.

  893. Flinders phage-genome “viral dark matter” PhD scholarship: closed round

    The 3.5-year scholarship in Robert Edwards’ programme combines phage biology, microbial genomics and computational analysis to study unknown phage-protein functions. Candidates must meet PhD admission requirements and work full-time on campus at Flinders. The advertised closing date was September 1, 2026; the page gives conflicting stipend figures.

  894. Compassionate-use phage therapy in 20 patients with drug-resistant mycobacterial disease

    A Clinical Infectious Diseases case series screened Mycobacterium isolates from 200 patients for phage susceptibility and gave phages intravenously, by aerosolization or both to 20 patients on a compassionate-use basis. No adverse reactions were attributed to therapy, favorable clinical or microbiological responses were seen in 11 patients, and no phage resistance emerged in the 11 patients treated with a single phage.

  895. ABLeS: computational resources and expertise for life-science data communities

    Australian BioCommons Leadership Share supports community-defined life-science data assets with infrastructure, computational resources, specialist expertise and shared software. Its focus includes reference data generation, production-scale analysis and bioinformatics software development. Access processes, eligibility and contacts are provided in the linked ABLeS documentation.

  896. AI4PEP public-health research: 2023 call archive

    AI4PEP’s Global South call supported responsible AI research for public-health preparedness and response within a One Health framework. Teams could request up to CAN$362,500, with up to CAN$1,283,286 per region. The 2023 application round is closed; the call’s timeline lists registration on January 15, letters of intent on February 24 and final proposals on April 7.

  897. AfOx Schmidt AI in Science faculty fellowships

    Early-career faculty at African universities can develop AI research in climate, food/water security or STEM underpinning biomedical research while retaining their home positions. The programme provides Oxford mentorship, training and computational resources. Applicants must be African citizens and residents, hold a PhD and be within six years of their current faculty appointment. Clinical outcomes and patient-data projects are excluded.

  898. ACIAR Pacific postgraduate scholarships: October 21 deadline

    ACIAR’s 2027 PASS programme supports postgraduate agriculture, forestry and fisheries research at USP and Fiji National University. Scholarships cover tuition, shared research costs and conference support, for up to two years for master’s students or three years for PhD candidates. Applications close on October 21, 2026.

  899. ICGEB African pathogen-detection fellowships: September 2026 round closed

    African early/mid-career scientists could apply for six months of training in Italy, India or South Africa, with host-specific stipends, travel, insurance and visa support. Topics include AMR, pathogen biology and computational biology/AI. An expression of interest was due August 14; selected applicants’ full applications closed September 30, 2026, at 23:59 CET.

  900. Phynteny predicts the functions of unknown phage genes from gene order (synteny)

    Phynteny is an open-source tool from the Edwards Lab (Grigson et al.) that uses a long short-term memory (LSTM) model trained on phage synteny, the conserved gene order across phages, to assign hypothetical phage proteins to a PHROG functional category; about 65% of phage genes have no known function. It takes a GenBank file with PHROG annotations (for example from pharokka) and returns predictions with a Phynteny score and a recalibrated confidence score, and it installs from bioconda or PyPI. The README flags this LSTM version as a work in progress limited to phages with 120 genes or fewer and points to a newer Phynteny Transformer.

  901. Ackermann review: problems of electron microscopy for bacteriophages

    Review of bacteriophage electron microscopy by H.-W. Ackermann (Advances in Virus Research, 2012). It argues that the quality of phage TEM micrographs has slipped since the 1970s, citing a survey of about 130 phage papers since 2006 in which 70 showed low-contrast, unsharp or otherwise poor images, and recommends purifying specimens, improving digital contrast and regularly checking magnification with test specimens.

  902. BioTuring AI/bioinformatics fellowship: October 26 deadline

    The three-month fellowship develops and deploys AI systems for life-science applications, with mentorship, a VND 11 million monthly full-time allowance and approximately US$15,000 per month in computing resources. Fellows can work in Ho Chi Minh City, at VIASM in Hanoi or remotely within Vietnam. Applications close October 26, 2026, at 23:59; onboarding is in November.

  903. JSPS A3 Foresight synthetic biology: 2025 archive

    The 2025 A3 Foresight programme supported synthetic-biology research networks between Japan, China and South Korea. Japanese-side support was planned at up to ¥50 million per project over five years. Applications closed on February 14, 2025; all three national partners had to submit matching proposals.

  904. FFAR ICASA animal-agriculture AMR grants: 2026 applications under review

    ICASA offered US$100,000–$500,000 for 18–36-month antimicrobial-stewardship projects relevant to U.S. beef or swine production. Domestic and international organizations could apply, with matching funds covering at least 40% of the total budget. Full proposals required a pre-application invitation and were due September 2, 2026, at 17:00 EDT. Applications are now under review.

  905. Anthropic–Adaptyv Protein Design Competition: five autumn challenges

    Five weekly AI protein-design challenges run September 28–November 1, 2026, with sponsored experimental validation and openly published results. Challenge 1 is open for submissions. Applications for Claude-supported tracks closed September 24; the open track uses participants’ own tools and compute. Each challenge closes Sunday at 23:59 Anywhere on Earth.

  906. HERA Invest: rolling venture loans for medical countermeasure SMEs

    HERA Invest offers non-dilutive venture loans covering up to 50% of investment costs for innovative SMEs developing medical countermeasures, including AMR technologies. Applications are accepted on a rolling basis. Applicants must already have raised equity from professional investors; individual financing typically starts at €7.5 million.

  907. Benchmarking tools for identifying phages in metagenomic data

    The authors benchmarked ten phage identification tools using artificial contigs, a four-phage mock community, and simulated viromes. DeepVirFinder had the highest F1-scores on the artificial contigs and mock community (0.98 and 0.61); most tools recovered similar alpha and beta diversity patterns, while Seeker differed significantly.

  908. ERC Advanced Grant REDQUEEN: infection sensing in the arms race between bacteria and phages (TU Delft)

    REDQUEEN, an ERC Advanced Grant project coordinated by Delft University of Technology, runs from 1 December 2026 to 30 November 2031 with an EU contribution of €2,500,000. It asks how bacteria sense phage invasion and activate antiviral responses and how phages counter that sensing, and plans AI-designed proteins that inhibit phage-defence systems to create engineered phages able to overcome host defences.

  909. ERC Advanced Grant PhageMatter: what determines phage-mediated control of microbial communities (University of Exeter)

    PhageMatter, an ERC Advanced Grant project coordinated by the University of Exeter, runs from 1 January 2027 to 31 December 2031 with an EU contribution of €2,466,523. It uses a library of 46 characterised soil bacterial isolates and their phage to test when phage drive, rather than follow, the dynamics of microbial communities, with implications from ecosystem responses to the optimisation of phage therapy.

  910. India DBT–BIRAC Bio-AI call: extended July 2026 deadline has passed

    The BioE3 Bio-AI call supports high-performance biomanufacturing collaborations, with categories including biomolecular design, synthetic biology, sustainable agriculture and genome diagnostics. Eligible companies, startups, LLPs and specified academic/research organizations apply through BIRAC. The extended deadline was July 15, 2026; older June 30 wording remains on the page.

  911. BIRAC i4 and PACE biotechnology grants: May 2025 archive

    BIRAC’s May 2025 biotechnology call covered BIPP, SBIRI and PACE’s AIR and CRS schemes, from proof-of-concept work to validation and pre-commercialisation. Its stated priorities included therapies for antimicrobial resistance, agriculture, aquaculture and AI applications. The extended deadline was May 30, 2025 at 5:30pm; funding and applicant rules differed by scheme.

  912. ESCMID Global 2027 travel and outreach support: next call October 7

    Travel, Outreach and LMIC grants will accept applications October 7–November 18, 2026. Travel grants provide registration and €500 for Young Scientist Members with accepted abstracts; Outreach and LMIC grants cover registration and up to €1,300 for travel and accommodation. The LMIC grant does not require an abstract. Other Study Group and Green Travel awards are expected in early 2027.

  913. Google.org AI for Science Impact Challenge: 2026 round closed

    The $30 million global AI for Science call offered selected nonprofits, social enterprises and academic institutions $500,000–$3 million, with optional technical support and cloud credits. Its health and life-science scope includes foundational models, open datasets and predictive biology. Applications closed May 1, 2026.

  914. Novo Nordisk Foundation: AMR diagnostics Challenge Programme 2027

    The Novo Nordisk Foundation’s Challenge Programme 2027 supports early-stage proof-of-concept research on rapid, minimally invasive and affordable point-of-care tests for lower respiratory tract infections. Grants of DKK 30–75 million run for six years; expressions of interest close October 7, 2026 at 2:00 pm Copenhagen time.

  915. BIRAC BIG: 25th call archive

    BIRAC’s 25th Biotechnology Ignition Grant call closed on November 30, 2025. The November 2025 guidelines offer eligible Indian biotech startups up to ₹50 lakh for proof-of-concept work over 18 months, with mentoring through BIG partners.

  916. ICGEB Biotechnet PhD fellowships: March 2026 round

    ICGEB’s Biotechnet PhD fellowships support research at Trieste, New Delhi and Cape Town. The March 2026 call closed on March 31. Monthly stipends were €1,500 in Trieste, US$1,122 in New Delhi or ZAR16,500 in Cape Town; applicants must be from Djibouti, Ethiopia, Kenya or Uganda and meet the call’s host-support and endorsement requirements.

  917. Phage-assisted evolution yields compact, efficient prime editors (PE6a-g)

    Broad Institute researchers used phage-assisted evolution to improve the editing efficiency of compact reverse transcriptases by up to 22-fold and generated prime editors 516-810 base pairs smaller than PEmax. The resulting PE6a-g editors enhanced therapeutically relevant editing in patient-derived fibroblasts and primary human T-cells, and achieved 40% loxP insertion in mouse cortex after dual-AAV delivery.

  918. npj Viruses collection “Phages as antimicrobial therapy”: call for submissions

    npj Viruses is inviting submissions to its collection “Phages as antimicrobial therapy”, edited by Ruby CY Lin (The University of Sydney), Sabrina Green (KU Leuven) and Renee Ng (The Kids Research Institute Australia and The University of Western Australia), with a submission deadline of 30 November 2026. The collection covers the translational landscape of phage therapy, from manufacturing platforms and quality assurance to regulatory frameworks, clinical trial design and health economics.